TCONS_00065489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065489
Unique NameTCONS_00065489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065489 ID=TCONS_00065489|Name=TCONS_00065489|organism=Clytia hemisphaerica|type=transcript|length=813bp
GGAATATTAACGTTTGATTTGTTTATAGTTCATaggattttttcaacttt
tttaaataagCAACAGTGTTTTAGGAAGACCATTGCAAAGTCACAATGGT
ACGTTGTTTTCACGCAGTAGTTTTGGTGTGCTCCATTGCAACTTTTGCTA
CACTTGCCATCAGTACTGGATCAACAAACTGGAAAGAGGATTTAGATATC
TACAAAAACATGCACAAGTACATTGGTCTTTGGAGGGCTTGCATAAATGT
GAAGGGAGACTCGGTTTCAGAGCTACCTCCATATCAGGAATGCGATCGTG
ACTTTTTGAGACCGAGGTTACAAGAGCCACCAGGCTGGTTCAATGCAGTC
CGTGTTTTAATGTTGATGTCCTGCATTGGATCAGGGTTTGGTATTTTTCT
TGTTGTCACGGCCATCGTCACTGATAAAGCGAAGAAAACTGGAAGTCGCA
TGTGGATCTGTGGATTACTTGTTCTACTGTCAGGTGTATTGGCGATCGCA
GCTTTGGCAATCTTCAGCCAACATTTTGAATGGTCGGTTGAATATGCTCA
CACGGCCGGTCGTTACTACGCAACTCATTGGCATAAACAACCTGATCATT
CAATGGTGGATGGTGTTTTCTTTAAGATCGAGATTTGGTTACGTTGGTCA
TTCGCAGTGGGATGGGCCGGTGCCGCTATGTCTGTCTTCACTTTCATCAC
CGCTGTATTGTCAGACTTGACAAGGGGTGTTACTATACTCAAATATTGAA
GAATACGATTTTTCGCTCTTTGTAAATTTATTGACATCTTTTCAGCATTT
TAGTTCAGGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00065489-protein

>TCONS_00065489-protein ID=TCONS_00065489-protein|Name=TCONS_00065489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MVRCFHAVVLVCSIATFATLAISTGSTNWKEDLDIYKNMHKYIGLWRACI
NVKGDSVSELPPYQECDRDFLRPRLQEPPGWFNAVRVLMLMSCIGSGFGI
FLVVTAIVTDKAKKTGSRMWICGLLVLLSGVLAIAALAIFSQHFEWSVEY
AHTAGRYYATHWHKQPDHSMVDGVFFKIEIWLRWSFAVGWAGAAMSVFTF
ITAVLSDLTRGVTILKY
Run BLAST on NCBI

transcript from alignment at scaffold_44:234586..236524+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065489 ID=TCONS_00065489|Name=TCONS_00065489|organism=Clytia hemisphaerica|type=transcript|length=1939bp|location=Sequence derived from alignment at scaffold_44:234586..236524+ (Clytia hemisphaerica)
GGAATATTAACGTTTGATTTGTTTATAGTTCATaggattttttcaacttt
tttaaataagCAACAGTGTTTTAGGTGAGTATTTTTATACCGATATATCG
TTAGATTAAAGTTTTATCAattgaaaacatttgaaaaaaaggtcaaaata
aaactttttttttgtcattgaaTGTAAGGTATAGTTTGTGAAAAACAAAA
TTGGTCAAGCAGTGATAgcctatttttctttcaattcttcACAAATATTT
ATTGGGTACcgttgtttctttcttttctagATTTGGATAATAACAGTGTC
ACGAAAAGAATATTTTGACCTTCATCCTTGTAAAGATTCTAGTAGCAAGA
GTCTGAGCACTTTCTCTAAATCTAAACCTCCTCGAAGAAagctttttata
ttttcaaattcagGAAGACCATTGCAAAGTCACAATGGTACGTTGTTTTC
ACGCAGTAGTTTTGGTGTGCTCCATTGCAACTTTTGCTACACTTGCCATC
AGTACTGGATCAACAAACTGGAAAGAGGATTTAGATATCTACAAAAACAT
GCACAAGTACATTGGTCTTTGGAGGGCTTGCATAAATGTGAAGGGAGACT
CGGTTTCAGAGCTACCTCCATATCAGGAATGCGATCGTGACTTTTTGAGA
CCGAGGTTACAAGAGCCACCAGGTACAAATATGAAACTTTTCGGTTGACG
TCTTTTTAAAACGGGAATGTTTTAGCAGTATCAAGCCATTTGGATAGATC
CAAATGGGGTATATTTAATGAGCTCAAGGACATCTAAAGAGCTAAATCTG
CTCACCGATGTTTAATTTGTTCGATTCTGCACCTGAATTTaattctcttt
ttttatgatcAGGCTGGTTCAATGCAGTCCGTGTTTTAATGTTGATGTCC
TGCATTGGATCAGGGTTTGGTATTTTTCTTGTTGTCACGGCCATCGTCAC
TGATAAAGCGAAGAAAACTGGAAGTCGCATGTGGATCTGTGGATTACTTG
TTCTACTGTCAGGTAAGTTCCCAGAATCCATTGCCATACACGGGGGATCT
CGCCGTACGTGCAGCCTTTGAAATCGGAACCTTACAGTGCAAGTGCAGAG
agaatttagccaaatttgacaaaacatggtcagatttcccaatttttaca
cccttagagtgcagtTTCTCCCATCATTACTTACTTCAACCCTTACAGTA
TACTTTGGGGAGTTTAAAAAAGGACCCTTAAGAGCTGCACGTAGGtcggt
cgtttaccttgagtgcctcCACCCGGGCATGAAATTGTATGAAaagctca
aaacaaaatttatcaaaaatccaCAAGCATGAAGTTCAGAACAGTCCGCC
CAGTAGAAAATTCCCTTTAATCTTTGCATGAGTAAATCATGTATGGACCA
TTTATCTAGAGGTGCCAAGATATGGTATTTGAACGATTTGAATATGGTAT
ATTAAAAATTCCAAGGTACTGCTCGCTTAACTTACATATTTACCACGCAG
CAAcattttttgggggggggggttgtcaTAATAAAGGGGTGTTAGAACTA
AATAGAACTTAAGTAGAATCAAAAaagggttgtaaaattaaaccaTTTTA
ACCTTACAGGTGTATTGGCGATCGCAGCTTTGGCAATCTTCAGCCAACAT
TTTGAATGGTCGGTTGAATATGCTCACACGGCCGGTCGTTACTACGCAAC
TCATTGGCATAAACAACCTGATCATTCAATGGTGGATGGTGTTTTCTTTA
AGATCGAGATTTGGTTACGTTGGTCATTCGCAGTGGGATGGGCCGGTGCC
GCTATGTCTGTCTTCACTTTCATCACCGCTGTATTGTCAGACTTGACAAG
GGGTGTTACTATACTCAAATATTGAAGAATACGATTTTTCGCTCTTTGTA
AATTTATTGACATCTTTTCAGCATTTTAGTTCAGGGTAA

Coding sequence (CDS) from alignment at scaffold_44:234586..236524+

>TCONS_00065489 ID=TCONS_00065489|Name=TCONS_00065489|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_44:234586..236524+ (Clytia hemisphaerica)
ATGGTACGTTGTTTTCACGCAGTAGTTTTGGTGTGCTCCATTGCAACTTT
TGCTACACTTGCCATCAGTACTGGATCAACAAACTGGAAAGAGGATTTAG
ATATCTACAAAAACATGCACAAGTACATTGGTCTTTGGAGGGCTTGCATA
AATGTGAAGGGAGACTCGGTTTCAGAGCTACCTCCATATCAGGAATGCGA
TCGTGACTTTTTGAGACCGAGGTTACAAGAGCCACCAGGCTGGTTCAATG
CAGTCCGTGTTTTAATGTTGATGTCCTGCATTGGATCAGGGTTTGGTATT
TTTCTTGTTGTCACGGCCATCGTCACTGATAAAGCGAAGAAAACTGGAAG
TCGCATGTGGATCTGTGGATTACTTGTTCTACTGTCAGGTGTATTGGCGA
TCGCAGCTTTGGCAATCTTCAGCCAACATTTTGAATGGTCGGTTGAATAT
GCTCACACGGCCGGTCGTTACTACGCAACTCATTGGCATAAACAACCTGA
TCATTCAATGGTGGATGGTGTTTTCTTTAAGATCGAGATTTGGTTACGTT
GGTCATTCGCAGTGGGATGGGCCGGTGCCGCTATGTCTGTCTTCACTTTC
ATCACCGCTGTATTGTCAGACTTGACAAGGGGTGTTACTATACTCAAATA
TTGAATGGTACGTTGTTTTCACGCAGTAGTTTTGGTGTGCTCCATTGCAA
CTTTTGCTACACTTGCCATCAGTACTGGATCAACAAACTGGAAAGAGGAT
TTAGATATCTACAAAAACATGCACAAGTACATTGGTCTTTGGAGGGCTTG
CATAAATGTGAAGGGAGACTCGGTTTCAGAGCTACCTCCATATCAGGAAT
GCGATCGTGACTTTTTGAGACCGAGGTTACAAGAGCCACCAGGCTGGTTC
AATGCAGTCCGTGTTTTAATGTTGATGTCCTGCATTGGATCAGGGTTTGG
TATTTTTCTTGTTGTCACGGCCATCGTCACTGATAAAGCGAAGAAAACTG
GAAGTCGCATGTGGATCTGTGGATTACTTGTTCTACTGTCAGGTGTATTG
GCGATCGCAGCTTTGGCAATCTTCAGCCAACATTTTGAATGGTCGGTTGA
ATATGCTCACACGGCCGGTCGTTACTACGCAACTCATTGGCATAAACAAC
CTGATCATTCAATGGTGGATGGTGTTTTCTTTAAGATCGAGATTTGGTTA
CGTTGGTCATTCGCAGTGGGATGGGCCGGTGCCGCTATGTCTGTCTTCAC
TTTCATCACCGCTGTATTGTCAGACTTGACAAGGGGTGTTACTATACTCA
AATATTGAATGGTACGTTGTTTTCACGCAGTAGTTTTGGTGTGCTCCATT
GCAACTTTTGCTACACTTGCCATCAGTACTGGATCAACAAACTGGAAAGA
GGATTTAGATATCTACAAAAACATGCACAAGTACATTGGTCTTTGGAGGG
CTTGCATAAATGTGAAGGGAGACTCGGTTTCAGAGCTACCTCCATATCAG
GAATGCGATCGTGACTTTTTGAGACCGAGGTTACAAGAGCCACCAGGCTG
GTTCAATGCAGTCCGTGTTTTAATGTTGATGTCCTGCATTGGATCAGGGT
TTGGTATTTTTCTTGTTGTCACGGCCATCGTCACTGATAAAGCGAAGAAA
ACTGGAAGTCGCATGTGGATCTGTGGATTACTTGTTCTACTGTCAGGTGT
ATTGGCGATCGCAGCTTTGGCAATCTTCAGCCAACATTTTGAATGGTCGG
TTGAATATGCTCACACGGCCGGTCGTTACTACGCAACTCATTGGCATAAA
CAACCTGATCATTCAATGGTGGATGGTGTTTTCTTTAAGATCGAGATTTG
GTTACGTTGGTCATTCGCAGTGGGATGGGCCGGTGCCGCTATGTCTGTCT
TCACTTTCATCACCGCTGTATTGTCAGACTTGACAAGGGGTGTTACTATA
CTCAAATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041046XLOC_041046Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065489-proteinTCONS_00065489-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065489-exon-scaffold_44-1491911889:234586..234659TCONS_00065489-exon-scaffold_44-1491911889:234586..234659Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1510915933:234586..234659TCONS_00065489-exon-scaffold_44-1510915933:234586..234659Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1575043694:234586..234659TCONS_00065489-exon-scaffold_44-1575043694:234586..234659Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1491911889:234999..235257TCONS_00065489-exon-scaffold_44-1491911889:234999..235257Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1510915933:234999..235257TCONS_00065489-exon-scaffold_44-1510915933:234999..235257Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1575043694:234999..235257TCONS_00065489-exon-scaffold_44-1575043694:234999..235257Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1491911889:235448..235597TCONS_00065489-exon-scaffold_44-1491911889:235448..235597Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1510915933:235448..235597TCONS_00065489-exon-scaffold_44-1510915933:235448..235597Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1575043694:235448..235597TCONS_00065489-exon-scaffold_44-1575043694:235448..235597Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1491911889:236195..236524TCONS_00065489-exon-scaffold_44-1491911889:236195..236524Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1510915933:236195..236524TCONS_00065489-exon-scaffold_44-1510915933:236195..236524Clytia hemisphaericaexon
TCONS_00065489-exon-scaffold_44-1575043694:236195..236524TCONS_00065489-exon-scaffold_44-1575043694:236195..236524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:234586..236524 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.171836	0	0.0650659	0.158423	0.438158	0	0.636282	0.791958	0.306552	0.952151	0.430311	0	0	0	0.10738	53.1337	61.1945	0.0624398	0.0653387	43.5589	41.3018	10.1022	19.2259	22.7032	21.05	0	0	0	0.132846
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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