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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066273 ID=TCONS_00066273|Name=TCONS_00066273|organism=Clytia hemisphaerica|type=transcript|length=2087bp
ATTGAAAAGTTTCAGTATCTAAAAAGTTATTTAATCGATGAAGCCGCTGA
CGCTATAAAAGGACTTAGACTTTCTGCTgaaaattatgataaagcgaGAG
AGATGCTGGAGCAGAGATTTGGCGATACACAAGTTTTAATTTCGCATCAT
ATGTCGCAGCTTTTAGATATACCACCTTGTGCAAATGTAGAAAACTTAAA
AGAACTGCGAAAACTTCATGATTCAATCGAATTTGCTATTCGAAATCTTG
AAACTTTGGGCTTAGATCAAAAGGAATATGGTCCAATGCTATCACCTATT
TTGCTGAACAAGATTCCTGTAGAAATCAAACTGATCGTTTCGAGAACTTT
GGAAAAGAATCAAAAATGGGACATTTCCAAAATAATGAACACTTTTTTGA
CAGAACTAGAAGCGAGAGAGAAAGTCAGCACCTCATATACGGAGGAGGGT
GCATACGCGTGTTCTGGTGCATCCCTACATGTTAGTTCAAAGTTCGAAAA
CAAGCAGAAACGAGAATTTCATAGAAAGGAGGATAATCAAAAActgattt
gtattttttgtcgGAGAGGTCACAGATCTAGAGATTGTGATATTATAACG
AAACCGGAAATTCGTAAAactattttacaaaaggagaaCCGTTGCTTTAT
TTGTATGAAAATTGGACATCGtgctcaaaaatgttcaaataaaatgaaat
gttttaatTGTAAAGGCAGACACCACGTTGCTGTTTGCACATACAAAAGT
GATTCTTCTCAAAGTAATTCACCAAATGCAAACTCCTCCCATcaaaaaga
ggagaagaaagaagagaaagatcAACACCCTATTGTTCCAGTCACAACAA
GTAACTTTGTCGATGTAAATAAAGTGAATTCGGTTCTTTTGAAAACTGCT
CGAGCGGAAATCTTTACAATAGatgaaaaacattcaaaaaacgtTAGACT
TTTATTTGATGATGGTTCAATGTCCAGTTACGTAACTAAAGAATTGTGTA
AAGAACTTTGTTTAAAACCAATTGCAAAACAAAAGGTTGCGATCAAAACC
TTtggtcaaaacaaaacaatcaaagAGCTCGATGTTGTTGAATTGTGTAT
CAAGTCGAAAGATAATAGAGAAAGTTTATACATTGAAGCTTTCGTGAACG
ACATTTGTTTACCGATTGagaatcaaaatatttctttagcAAAGGAACAG
TATGAACCTTTGAACTTCGTTGATCTCGCTGATAGTAATCCACGTAATTT
ACCCATGACAATAGACATTCTTATCGGTTCAGCGCACTATTGGAACTTCA
TTGGTAACAAACAGATCAGATGCCCTGATGGTCCTACTGCTTTGGAGTCA
AAACTCGGTTACGTTTTGAGTGGTCCAATCGCCTCGAATGATACATCGCC
GGCAACCTCGAATTTATTCGTTACTACACATGCATTGAAAGTCGCTTCAG
AATTCGTTGACCCAAGACATGAGATTCGAGATCACCTACACCAAATCTAT
GATACCAATAATGAAATTCCATCTGACCCAGAcgttttaaaaacttttga
tgaaactaCGAAATTTCGTGACGGTCGTTATGAAGTTCAATTGCCTTTCA
AATCTGAATCAATCGATACGTTGGGAGACAACTACAACACTTGCAGAAAA
CGTTTGAGAAATCTAACCAAAACttttaagaacaatcctgaTTTACTTCA
AGAATACGCGTCAATTCTTGAAAACCAAGAGTCGTTAGGTGTTATCGAAC
GTATCGAACCTAATGATTACAAAGTCGGAGAAACTCATTACTTACCACAC
CGTGCAGTTGTTCATGAACAGAGAGAGACTACCAAAGTTCGTGTCGTTTT
CGATGCCAGTTGTAAGAGTGGAAAGGATGCTCCATCATTAAACGACGTTT
TAGAATCTGGTCCTTCGCTGACACCATTGCTCCAAGACGTGCTTATGCGT
TTTCGTTCGTTCAATTATCTAGTCGTTGCTGACATTGAAAAAGCATTCCT
GAATATCGCACTTGCTAGAGAGCATCAAGACTACGTTCGGTTCCTGTGGT
TTCGAGATATTTCGAATATTAACTTTGAACATTTTGA Run BLAST on NCBI protein sequence of TCONS_00066273-protein >TCONS_00066273-protein ID=TCONS_00066273-protein|Name=TCONS_00066273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp
IEKFQYLKSYLIDEAADAIKGLRLSAENYDKAREMLEQRFGDTQVLISHH
MSQLLDIPPCANVENLKELRKLHDSIEFAIRNLETLGLDQKEYGPMLSPI
LLNKIPVEIKLIVSRTLEKNQKWDISKIMNTFLTELEAREKVSTSYTEEG
AYACSGASLHVSSKFENKQKREFHRKEDNQKLICIFCRRGHRSRDCDIIT
KPEIRKTILQKENRCFICMKIGHRAQKCSNKMKCFNCKGRHHVAVCTYKS
DSSQSNSPNANSSHQKEEKKEEKDQHPIVPVTTSNFVDVNKVNSVLLKTA
RAEIFTIDEKHSKNVRLLFDDGSMSSYVTKELCKELCLKPIAKQKVAIKT
FGQNKTIKELDVVELCIKSKDNRESLYIEAFVNDICLPIENQNISLAKEQ
YEPLNFVDLADSNPRNLPMTIDILIGSAHYWNFIGNKQIRCPDGPTALES
KLGYVLSGPIASNDTSPATSNLFVTTHALKVASEFVDPRHEIRDHLHQIY
DTNNEIPSDPDVLKTFDETTKFRDGRYEVQLPFKSESIDTLGDNYNTCRK
RLRNLTKTFKNNPDLLQEYASILENQESLGVIERIEPNDYKVGETHYLPH
RAVVHEQRETTKVRVVFDASCKSGKDAPSLNDVLESGPSLTPLLQDVLMR
FRSFNYLVVADIEKAFLNIALAREHQDYVRFLWFRDISNINFEHF Run BLAST on NCBI transcript from alignment at scaffold_451:366492..368578 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066273 ID=TCONS_00066273|Name=TCONS_00066273|organism=Clytia hemisphaerica|type=transcript|length=2087bp|location=Sequence derived from alignment at scaffold_451:366492..368578 (Clytia hemisphaerica)
TCAAAATGTTCAAAGTTAATATTCGAAATATCTCGAAACCACAGGAACCG
AACGTAGTCTTGATGCTCTCTAGCAAGTGCGATATTCAGGAATGCTTTTT
CAATGTCAGCAACGACTAGATAATTGAACGAACGAAAACGCATAAGCACG
TCTTGGAGCAATGGTGTCAGCGAAGGACCAGATTCTAAAACGTCGTTTAA
TGATGGAGCATCCTTTCCACTCTTACAACTGGCATCGAAAACGACACGAA
CTTTGGTAGTCTCTCTCTGTTCATGAACAACTGCACGGTGTGGTAAGTAA
TGAGTTTCTCCGACTTTGTAATCATTAGGTTCGATACGTTCGATAACACC
TAACGACTCTTGGTTTTCAAGAATTGACGCGTATTCTTGAAGTAAAtcag
gattgttcttaaaaGTTTTGGTTAGATTTCTCAAACGTTTTCTGCAAGTG
TTGTAGTTGTCTCCCAACGTATCGATTGATTCAGATTTGAAAGGCAATTG
AACTTCATAACGACCGTCACGAAATTTCGtagtttcatcaaaagttttta
aaacgTCTGGGTCAGATGGAATTTCATTATTGGTATCATAGATTTGGTGT
AGGTGATCTCGAATCTCATGTCTTGGGTCAACGAATTCTGAAGCGACTTT
CAATGCATGTGTAGTAACGAATAAATTCGAGGTTGCCGGCGATGTATCAT
TCGAGGCGATTGGACCACTCAAAACGTAACCGAGTTTTGACTCCAAAGCA
GTAGGACCATCAGGGCATCTGATCTGTTTGTTACCAATGAAGTTCCAATA
GTGCGCTGAACCGATAAGAATGTCTATTGTCATGGGTAAATTACGTGGAT
TACTATCAGCGAGATCAACGAAGTTCAAAGGTTCATACTGTTCCTTTgct
aaagaaatattttgattctCAATCGGTAAACAAATGTCGTTCACGAAAGC
TTCAATGTATAAACTTTCTCTATTATCTTTCGACTTGATACACAATTCAA
CAACATCGAGCTctttgattgttttgttttgaccaAAGGTTTTGATCGCA
ACCTTTTGTTTTGCAATTGGTTTTAAACAAAGTTCTTTACACAATTCTTT
AGTTACGTAACTGGACATTGAACCATCATCAAATAAAAGTCTAacgtttt
ttgaatgtttttcatCTATTGTAAAGATTTCCGCTCGAGCAGTTTTCAAA
AGAACCGAATTCACTTTATTTACATCGACAAAGTTACTTGTTGTGACTGG
AACAATAGGGTGTTgatctttctcttctttcttctcctctttttgATGGG
AGGAGTTTGCATTTGGTGAATTACTTTGAGAAGAATCACTTTTGTATGTG
CAAACAGCAACGTGGTGTCTGCCTTTACAattaaaacatttcattttatt
tgaacatttttgagcaCGATGTCCAATTTTCATACAAATAAAGCAACGGt
tctccttttgtaaaatagtTTTACGAATTTCCGGTTTCGTTATAATATCA
CAATCTCTAGATCTGTGACCTCTCcgacaaaaaatacaaatcagTTTTTG
ATTATCCTCCTTTCTATGAAATTCTCGTTTCTGCTTGTTTTCGAACTTTG
AACTAACATGTAGGGATGCACCAGAACACGCGTATGCACCCTCCTCCGTA
TATGAGGTGCTGACTTTCTCTCTCGCTTCTAGTTCTGTCAAAAAAGTGTT
CATTATTTTGGAAATGTCCCATTTTTGATTCTTTTCCAAAGTTCTCGAAA
CGATCAGTTTGATTTCTACAGGAATCTTGTTCAGCAAAATAGGTGATAGC
ATTGGACCATATTCCTTTTGATCTAAGCCCAAAGTTTCAAGATTTCGAAT
AGCAAATTCGATTGAATCATGAAGTTTTCGCAGTTCTTTTAAGTTTTCTA
CATTTGCACAAGGTGGTATATCTAAAAGCTGCGACATATGATGCGAAATT
AAAACTTGTGTATCGCCAAATCTCTGCTCCAGCATCTCTCtcgctttatc
ataattttcAGCAGAAAGTCTAAGTCCTTTTATAGCGTCAGCGGCTTCAT
CGATTAAATAACTTTTTAGATACTGAAACTTTTCAAT Coding sequence (CDS) from alignment at scaffold_451:366492..368578 >TCONS_00066273 ID=TCONS_00066273|Name=TCONS_00066273|organism=Clytia hemisphaerica|type=CDS|length=2085bp|location=Sequence derived from alignment at scaffold_451:366492..368578 (Clytia hemisphaerica)
AAAATGTTCAAAGTTAATATTCGAAATATCTCGAAACCACAGGAACCGAA
CGTAGTCTTGATGCTCTCTAGCAAGTGCGATATTCAGGAATGCTTTTTCA
ATGTCAGCAACGACTAGATAATTGAACGAACGAAAACGCATAAGCACGTC
TTGGAGCAATGGTGTCAGCGAAGGACCAGATTCTAAAACGTCGTTTAATG
ATGGAGCATCCTTTCCACTCTTACAACTGGCATCGAAAACGACACGAACT
TTGGTAGTCTCTCTCTGTTCATGAACAACTGCACGGTGTGGTAAGTAATG
AGTTTCTCCGACTTTGTAATCATTAGGTTCGATACGTTCGATAACACCTA
ACGACTCTTGGTTTTCAAGAATTGACGCGTATTCTTGAAGTAAAtcagga
ttgttcttaaaaGTTTTGGTTAGATTTCTCAAACGTTTTCTGCAAGTGTT
GTAGTTGTCTCCCAACGTATCGATTGATTCAGATTTGAAAGGCAATTGAA
CTTCATAACGACCGTCACGAAATTTCGtagtttcatcaaaagtttttaaa
acgTCTGGGTCAGATGGAATTTCATTATTGGTATCATAGATTTGGTGTAG
GTGATCTCGAATCTCATGTCTTGGGTCAACGAATTCTGAAGCGACTTTCA
ATGCATGTGTAGTAACGAATAAATTCGAGGTTGCCGGCGATGTATCATTC
GAGGCGATTGGACCACTCAAAACGTAACCGAGTTTTGACTCCAAAGCAGT
AGGACCATCAGGGCATCTGATCTGTTTGTTACCAATGAAGTTCCAATAGT
GCGCTGAACCGATAAGAATGTCTATTGTCATGGGTAAATTACGTGGATTA
CTATCAGCGAGATCAACGAAGTTCAAAGGTTCATACTGTTCCTTTgctaa
agaaatattttgattctCAATCGGTAAACAAATGTCGTTCACGAAAGCTT
CAATGTATAAACTTTCTCTATTATCTTTCGACTTGATACACAATTCAACA
ACATCGAGCTctttgattgttttgttttgaccaAAGGTTTTGATCGCAAC
CTTTTGTTTTGCAATTGGTTTTAAACAAAGTTCTTTACACAATTCTTTAG
TTACGTAACTGGACATTGAACCATCATCAAATAAAAGTCTAacgtttttt
gaatgtttttcatCTATTGTAAAGATTTCCGCTCGAGCAGTTTTCAAAAG
AACCGAATTCACTTTATTTACATCGACAAAGTTACTTGTTGTGACTGGAA
CAATAGGGTGTTgatctttctcttctttcttctcctctttttgATGGGAG
GAGTTTGCATTTGGTGAATTACTTTGAGAAGAATCACTTTTGTATGTGCA
AACAGCAACGTGGTGTCTGCCTTTACAattaaaacatttcattttatttg
aacatttttgagcaCGATGTCCAATTTTCATACAAATAAAGCAACGGttc
tccttttgtaaaatagtTTTACGAATTTCCGGTTTCGTTATAATATCACA
ATCTCTAGATCTGTGACCTCTCcgacaaaaaatacaaatcagTTTTTGAT
TATCCTCCTTTCTATGAAATTCTCGTTTCTGCTTGTTTTCGAACTTTGAA
CTAACATGTAGGGATGCACCAGAACACGCGTATGCACCCTCCTCCGTATA
TGAGGTGCTGACTTTCTCTCTCGCTTCTAGTTCTGTCAAAAAAGTGTTCA
TTATTTTGGAAATGTCCCATTTTTGATTCTTTTCCAAAGTTCTCGAAACG
ATCAGTTTGATTTCTACAGGAATCTTGTTCAGCAAAATAGGTGATAGCAT
TGGACCATATTCCTTTTGATCTAAGCCCAAAGTTTCAAGATTTCGAATAG
CAAATTCGATTGAATCATGAAGTTTTCGCAGTTCTTTTAAGTTTTCTACA
TTTGCACAAGGTGGTATATCTAAAAGCTGCGACATATGATGCGAAATTAA
AACTTGTGTATCGCCAAATCTCTGCTCCAGCATCTCTCtcgctttatcat
aattttcAGCAGAAAGTCTAAGTCCTTTTATAGCGTCAGCGGCTTCATCG
ATTAAATAACTTTTTAGATACTGAAACTTTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066273-exon-scaffold_451-1491911889:366492..368578 | TCONS_00066273-exon-scaffold_451-1491911889:366492..368578 | Clytia hemisphaerica | exon |
| TCONS_00066273-exon-scaffold_451-1510915933:366492..368578 | TCONS_00066273-exon-scaffold_451-1510915933:366492..368578 | Clytia hemisphaerica | exon |
| TCONS_00066273-exon-scaffold_451-1575043694:366492..368578 | TCONS_00066273-exon-scaffold_451-1575043694:366492..368578 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:366492..368578 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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