TCONS_00066283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066283
Unique NameTCONS_00066283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066283 ID=TCONS_00066283|Name=TCONS_00066283|organism=Clytia hemisphaerica|type=transcript|length=647bp
TTCTGTACATCTTTTAAAGCAATCAAAGTAAATCGATTAAAAGGAAATGA
ACTATATAACACTCCGACTGATTCTTATTATATATCAAAATTCAACATAA
AACATGACGTTTATGACATAACGCATTGACAATAAAATCTAAAAGAGTTT
TTTAAGCCACGGAATGAATACCTATCTCTTCTATTGTAAATCGAATTGAG
TGATCTTTCTCTCGAAAGCAATAATCCATCGAAGTAATTAGTAAAACATA
AAAAGTATTTAAGTTTAGTAAAATACATTTCCACTTTTTTTATTCACCAG
TTTGCAAGCTCACTCAAAATTTACTGATGTAAACGTGACCTAATGGAACA
TATGACTGTCTGGAGAGCGTGCTTTTGCCTCGATTATCTCAAACATAAAC
AAGAGAGGTTTCTATAAAAAGATTTCTTGTTTACATTATGTCATATGATT
AGACATGTCTCGATTAAACCTGATAAAAGTAATAAGCGGTTTCATGAAAA
CTTGATGCTGCCAAATGGCACAGATGAAATGATACACTTTCTTTGGAAAA
CAACATACTTAAAAAGTGCATGGAAAATATATGCCCACTCTCAATCAACc
aaaaaaatggaagaaaagatGTTTACGTAATCTTTTCGATGTCCTCG
Run BLAST on NCBI

transcript from alignment at scaffold_451:533773..534419

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066283 ID=TCONS_00066283|Name=TCONS_00066283|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_451:533773..534419 (Clytia hemisphaerica)
CGAGGACATCGAAAAGATTACGTAAACatcttttcttccatttttttgGT
TGATTGAGAGTGGGCATATATTTTCCATGCACTTTTTAAGTATGTTGTTT
TCCAAAGAAAGTGTATCATTTCATCTGTGCCATTTGGCAGCATCAAGTTT
TCATGAAACCGCTTATTACTTTTATCAGGTTTAATCGAGACATGTCTAAT
CATATGACATAATGTAAACAAGAAATCTTTTTATAGAAACCTCTCTTGTT
TATGTTTGAGATAATCGAGGCAAAAGCACGCTCTCCAGACAGTCATATGT
TCCATTAGGTCACGTTTACATCAGTAAATTTTGAGTGAGCTTGCAAACTG
GTGAATAAAAAAAGTGGAAATGTATTTTACTAAACTTAAATACTTTTTAT
GTTTTACTAATTACTTCGATGGATTATTGCTTTCGAGAGAAAGATCACTC
AATTCGATTTACAATAGAAGAGATAGGTATTCATTCCGTGGCTTAAAAAA
CTCTTTTAGATTTTATTGTCAATGCGTTATGTCATAAACGTCATGTTTTA
TGTTGAATTTTGATATATAATAAGAATCAGTCGGAGTGTTATATAGTTCA
TTTCCTTTTAATCGATTTACTTTGATTGCTTTAAAAGATGTACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041485XLOC_041485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066283-exon-scaffold_451-1491911889:533773..534419TCONS_00066283-exon-scaffold_451-1491911889:533773..534419Clytia hemisphaericaexon
TCONS_00066283-exon-scaffold_451-1510915933:533773..534419TCONS_00066283-exon-scaffold_451-1510915933:533773..534419Clytia hemisphaericaexon
TCONS_00066283-exon-scaffold_451-1575043694:533773..534419TCONS_00066283-exon-scaffold_451-1575043694:533773..534419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:533773..534419 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0789872	0	0.0897256	0.436929	0.172634	0.624825	0.292477	0.477797	0.0845469	0	0.10789	0.16161	0	0.229971	0.0493588	0.30403	0	0.0861042	0	0.313259	0.229195	0.0928723	0.0844344	0.260896	0.0776146	0.222133	0.118533	0.089903	0.091597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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