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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066237 ID=TCONS_00066237|Name=TCONS_00066237|organism=Clytia hemisphaerica|type=transcript|length=4216bpRun BLAST on NCBI protein sequence of TCONS_00066237-protein >TCONS_00066237-protein ID=TCONS_00066237-protein|Name=TCONS_00066237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp MDVQIPPGLTELMQDFTVAALRERPNDIVDFAADYFVKLRESKKQYDGGARun BLAST on NCBI transcript from alignment at scaffold_451:742305..779481- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066237 ID=TCONS_00066237|Name=TCONS_00066237|organism=Clytia hemisphaerica|type=transcript|length=37177bp|location=Sequence derived from alignment at scaffold_451:742305..779481- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:742305..779481- >TCONS_00066237 ID=TCONS_00066237|Name=TCONS_00066237|organism=Clytia hemisphaerica|type=CDS|length=12540bp|location=Sequence derived from alignment at scaffold_451:742305..779481- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066237 vs. Swiss-Prot (Human)
Match: KAP2 (cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Homo sapiens GN=PRKAR2A PE=1 SV=2) HSP 1 Score: 406.757 bits (1044), Expect = 2.483e-128 Identity = 210/396 (53.03%), Postives = 268/396 (67.68%), Query Frame = 3
Query: 384 VQIPPGLTELMQDFTVAALRERPNDIVDFAADYFVKLRESK-----------KQYDGGAKPKG----VQFXXXXXXXXXXXXXXXXXKNRYARRQSVCAEAYNPDESDDEDEKLVVHPKSDVQRKRLNEAVGNILLFKNLDNEQLNNVLDAMFERKTTADEHIIDQGDDGDNFYVIDRGIFDIYVKIDGSDKKVGAYNNKGSFGELALMYNTPRAATIVSNDEGIIWALDRVTFRRIVLKAAYLRRKMHEALLEKVPMLKHLNEFERMNVADALESRQYNDDVTIIRQGEEGSSMFFIEKGEVSVKI-------QDDSGREVEVTTLREGQYFGELALVTHKPRAASVYSKGDCKVAALDILAFERLLGSCMEVMKRSIGDYEEQLKKLGLSNRDL 1505
+QIPPGLTEL+Q +TV LR++P D+V+FA +YF +LRE++ +Q G P+ V + G E + P +R+ RR SVCAE YNPDE +++ + V+HPK+D QR RL EA +ILLFKNLD EQL+ VLDAMFER ADEH+IDQGDDGDNFYVI+RG +DI V D + VG Y+N+GSFGELALMYNTPRAATIV+ EG +W LDRVTFRRI++K +RKM E+ +E VP+LK L ERM + D + + Y D II QGE+ S + IE GEVS+ I +D +EVE+ +GQYFGELALVT+KPRAAS Y+ GD K +D+ AFERLLG CM++MKR+I YEEQL K+ S+ DL
Sbjct: 4 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREARAPASVLPAATPRQSLGHPPPEPGPDRVADAKGDSESEEDEDLEVPVPSRFNRRVSVCAETYNPDEEEEDTDPRVIHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLLKSLEVSERMKIVDVIGEKIYKDGERIITQGEKADSFYIIESGEVSILIRSRTKSNKDGGNQEVEIARCHKGQYFGELALVTNKPRAASAYAVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQLVKMFGSSVDL 399 The following BLAST results are available for this feature:
BLAST of TCONS_00066237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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