TCONS_00067024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067024
Unique NameTCONS_00067024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067024 ID=TCONS_00067024|Name=TCONS_00067024|organism=Clytia hemisphaerica|type=transcript|length=649bp
AAGTATCCACTGGTCATAatatcgaaaaaattaaaaagcgtGAGGTTGGC
tggttttttaaaaatgttagtTTTTACATGACCGGTTTTTTCTGTCGCTT
TATATTATGGAGTTGAAAATTCCGGGATTATTGgtgaacaagtttagaaa
ttatctccgttaATTCTTAAATGTAAACTATGCAAGCTGTAGCAAAaata
aagatggctgacgaaacaacgatgGAATATTCACAGCGAGCAATGGGAGA
AAGGCTGAATATTTCGAGATCAAGTTTGATTGCCACGGCTGACATTATTT
GAAGGGGGTGgggttcaaaatcaaaatccatTTGACGTTTTCCGTGGCAA
GTCTGAGTTTGGAATGCTCTCCTTATTAGATACAACATTGTCAAAAAATT
GTTAGGGGATAAAGAGAACCCAAGGCATATAAAACAATGATGACCTGGAT
AAATAAATTGGAAAAGtcaaacatttttagaaaagagATGCATATTTTTT
AATCGAATAAAGACAGACAAGTCActcaaagctttcaaaaaactaCAAAG
AAGGTACTCTTATAGGAGGTTACTAGAGATTGAAAGTGTaaaatcgaaat
gaaaaattaacttgtTCTATGATTTAATTGCAAACTTTTGAGAATATCT
Run BLAST on NCBI

transcript from alignment at scaffold_462:14102..14750

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067024 ID=TCONS_00067024|Name=TCONS_00067024|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at scaffold_462:14102..14750 (Clytia hemisphaerica)
AGATATTCTCAAAAGTTTGCAATTAAATCATAGAacaagttaatttttca
tttcgattttACACTTTCAATCTCTAGTAACCTCCTATAAGAGTACCTTC
TTTGtagttttttgaaagctttgagTGACTTGTCTGTCTTTATTCGATTA
AAAAATATGCATctcttttctaaaaatgtttgaCTTTTCCAATTTATTTA
TCCAGGTCATCATTGTTTTATATGCCTTGGGTTCTCTTTATCCCCTAACA
ATTTTTTGACAATGTTGTATCTAATAAGGAGAGCATTCCAAACTCAGACT
TGCCACGGAAAACGTCAAatggattttgattttgaacccCACCCCCTTCA
AATAATGTCAGCCGTGGCAATCAAACTTGATCTCGAAATATTCAGCCTTT
CTCCCATTGCTCGCTGTGAATATTCcatcgttgtttcgtcagccatcttt
attTTTGCTACAGCTTGCATAGTTTACATTTAAGAATtaacggagataat
ttctaaacttgttcacCAATAATCCCGGAATTTTCAACTCCATAATATAA
AGCGACAGAAAAAACCGGTCATGTAAAAactaacatttttaaaaaaccaG
CCAACCTCacgctttttaattttttcgatatTATGACCAGTGGATACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041864XLOC_041864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067024-exon-scaffold_462-1491911889:14102..14750TCONS_00067024-exon-scaffold_462-1491911889:14102..14750Clytia hemisphaericaexon
TCONS_00067024-exon-scaffold_462-1510915933:14102..14750TCONS_00067024-exon-scaffold_462-1510915933:14102..14750Clytia hemisphaericaexon
TCONS_00067024-exon-scaffold_462-1575043694:14102..14750TCONS_00067024-exon-scaffold_462-1575043694:14102..14750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:14102..14750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0786282	0.639064	1.25045	0.434943	0.0859244	0.103664	0.0970491	0	0.252488	0.326761	1.074	0.107251	0	0.549421	0.0694966	0	0.0620409	0	0.0896923	0.434826	0.912614	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top