TCONS_00067037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067037
Unique NameTCONS_00067037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067037 ID=TCONS_00067037|Name=TCONS_00067037|organism=Clytia hemisphaerica|type=transcript|length=751bp
TTTCTAAATCTCCGTCAAATTTCTGTTattttggtatgcaatatgaccat
gttttgagaaagttgatttttagACATAATTGGCCACTAACATAAATAag
ctttaaaatagaactttgagggccttacgtaatgttaatttttattttta
aacatgtTTCGATATATTAATATGGACAAAAGGTCTGTAGACTTTTAAGA
AATTCCTCAATAGTGACAAGAAAAACCTTTTTGACACCTGGGAAATTCCC
TCGAATGAACCACAAGTGGTTATTTGGCAGAAGACACCTACAGGCTTGCT
AGCAGTTTGTGATTTTCAGACTACCAATGActaaaaatgactgaaaatgg
gtGAACTTCAGCCACGCTGGTGCACCAGAGAGCTCTGAAAAGCTGTTTGT
AGTTGATTAAAGCATCAAATATGTTCTAATAGATGTCTTCAATCTTCAAT
CTCAGACAAAAAAATAGCTTCAAGACtttacaaaaattaattttcttttg
aaatttttcatgcatttttgaaaagtctacatTCTTTTGTCCGAGATTGT
AGATTGTCTGCCGGTTCTTTGGCTTCAACTGTTTGCTTATTTTACTAGTT
TCTTATGTTTTAAGTATCTAGTACAAATCTAGCTTACTTTGTTTTACCAG
CGGGAACAATTTATTTATATAGGCAATTGTATTATAACTTACAGATATAA
GGTTTATATGTACAAGTAGTAGTAAGATATAACgatcaatttaaaaacaa
g
Run BLAST on NCBI

transcript from alignment at scaffold_462:377928..378678

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067037 ID=TCONS_00067037|Name=TCONS_00067037|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at scaffold_462:377928..378678 (Clytia hemisphaerica)
cttgtttttaaattgatcGTTATATCTTACTACTACTTGTACATATAAAC
CTTATATCTGTAAGTTATAATACAATTGCCTATATAAATAAATTGTTCCC
GCTGGTAAAACAAAGTAAGCTAGATTTGTACTAGATACTTAAAACATAAG
AAACTAGTAAAATAAGCAAACAGTTGAAGCCAAAGAACCGGCAGACAATC
TACAATCTCGGACAAAAGAatgtagacttttcaaaaatgcatgaaaaatt
tcaaaagaaaattaatttttgtaaaGTCTTGAAGCTATTTTTTTGTCTGA
GATTGAAGATTGAAGACATCTATTAGAACATATTTGATGCTTTAATCAAC
TACAAACAGCTTTTCAGAGCTCTCTGGTGCACCAGCGTGGCTGAAGTTCa
cccattttcagtcatttttagTCATTGGTAGTCTGAAAATCACAAACTGC
TAGCAAGCCTGTAGGTGTCTTCTGCCAAATAACCACTTGTGGTTCATTCG
AGGGAATTTCCCAGGTGTCAAAAAGGTTTTTCTTGTCACTATTGAGGAAT
TTCTTAAAAGTCTACAGACCTTTTGTCCATATTAATATATCGAAacatgt
ttaaaaataaaaattaacattacgtaaggccctcaaagttctattttaaa
gctTATTTATGTTAGTGGCCAATTATGTctaaaaatcaactttctcaaaa
catggtcatattgcataccaaaatAACAGAAATTTGACGGAGATTTAGAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041876XLOC_041876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067037-exon-scaffold_462-1491911889:377928..378678TCONS_00067037-exon-scaffold_462-1491911889:377928..378678Clytia hemisphaericaexon
TCONS_00067037-exon-scaffold_462-1510915933:377928..378678TCONS_00067037-exon-scaffold_462-1510915933:377928..378678Clytia hemisphaericaexon
TCONS_00067037-exon-scaffold_462-1575043694:377928..378678TCONS_00067037-exon-scaffold_462-1575043694:377928..378678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:377928..378678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.063831	0.222342	0.475822	0.0882725	0	0.168311	0.236356	0.0551594	0.0683239	0	0.174376	0.653002	0.22605	0	0.134566	0.147415	0.453287	0.695823	0.308505	0.949314	0.926085	0.150104	0.507001	0.42167	0.125444	0.0897547	0	0.0726523	0.148042
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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