|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066979 ID=TCONS_00066979|Name=TCONS_00066979|organism=Clytia hemisphaerica|type=transcript|length=1766bp
GTTTTCAGTAGTTTTTTCGAAGGCGAGCAACTATTTTGAAAAAGCAGGGT
AGTTAATCAAAATTATCTGATCCAGTAAGTGCCATTCTACCGGAATTGTT
TCCAAGTTGACATGACAGAGACAAATACTTTAGAGAAAAGTAAAGAATAC
AAAAAATGGACGAAGTTACTCAAGAAAACAACCTACATCtcttattttct
catttttcttggTGGCTTGGAAATCAATGCTGTCCAAATTTCAATGTTAT
ATtatttggaagaaagttttaaaatgacTCCAGACGAAGTAAGACTGTAT
TATAGTCTAGCTGAAGCATTTAATGCTTTAGGTCAATGTTTTAGTGGGTT
ATTGATTGGACGTTATATGGACAGAACAAGGAATTTAAAATTATCctgtt
tattgattttatgTGCTACCATCGTTGGGAATTTATTATATTCTTTACCC
GTCCACGTTTCGTTTATCGTGATTGGACGATTTTTATGTGGCTTCAATGA
GGCATTCCAAGTTGCTTTTTGTGgCGAATTCAAAAGATGTTATCATAAAG
AAGACGAGTTGATCCAAGTTTTGAGTTGGTATGAACTCTTCTTCGCCATT
GGTATGGCTACTGGACCTGGTGCACCAGTCATTTTCTCGTGGGTCTACCT
CAAAATTGGTGGATGGATGATCAATAAATACAATGCATTACACGTATTCC
TTGTAGTCCTGTTAGCCCTTTTGTTCATCATATTATGGTTCCAACTCACT
GATCTATCAAAAGACCTGGATCGTATGAGAGAGAAATTCAACATTATGTC
AAAATCTTCCCATGAGGAACAAGCATTGAAGAAAAGATCTGGAAAAATAA
ACAGCGGAAAAGACCGTTTAACTAATGGtgaaatttgcaaaagtaacAAG
CATGCTTTCGTGCCAAAAGGATCACGAAAACTTATGGAATGGAGAGAGCT
TTTACAAATCGATATCATTTCGTTATGTACGTGTTATACCATAATAAGAT
ATTGTACTAATGCATCTGTGGCATTAATTACAATGGACGCTGCTACACTA
TTCCATTGGCCAGTCAGTTGGATTTCATGGCTTACCATAGCTGGAGCTTG
CACTCATTTTCTTGTGATAACAACGCTGATAAAATGCCGTGTCTTCAAAG
GACTCAGAAGAAACTATTTCTTCTACCTATCAGCGTTAAATCTAACCTTC
GTCATGCTTGCTATCATCCCATTACCAAGGATtgacaattttaaaagtta
caCACTCCAATTACTTTATTTGGCGTTTCTAATCCTTGCTAAAGGCTGGA
CCTTTTTCAATGCCCAGTCAGCAgggaaaattttattgttcaacACAGTA
ACGCCAGAGAACTCTTGCCTGATTGACAGTATTAGATCGTCTGTCGGTTC
TCTGGCTCGACTGTTTGCTTTTTCCACGAGTTTCTTATGTTTTAAATATC
CAGGTTATTTTATTTTACCAGCAGGAACTATTTTGTTTATAGGGAATTGT
GTTATAGTTTACAGATATAAGGTTTTACTGTATAATAAGAGTAAGGGTGT
GAAGTAAAATGCATTTACGACAGTTTATATGGAATACTACTAATGGATAC
CCCTAAAAATCTACAACAAAAAAAGGTAACCCCTATATCATGATAGAGAA
AACAGTAAGGGCATAAACTTTTTCTGGCGAGTTAGGCTACCTATGAATTT
CTTCCTTGGTTAAGGTATTTTGTAAAAGCCGCTAAGAAAACTTTTATTGC
TCggtgaaaaaatcca Run BLAST on NCBI transcript from alignment at scaffold_462:378970..382301- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066979 ID=TCONS_00066979|Name=TCONS_00066979|organism=Clytia hemisphaerica|type=transcript|length=3332bp|location=Sequence derived from alignment at scaffold_462:378970..382301- (Clytia hemisphaerica)
GTTTTCAGTAGTTTTTTCGAAGGCGAGCAACTATTTTGAAAAAGCAGGGT
AGTTAATCAAAATTATCTGATCCAGTAAGTGCCATTCTACCGGAATTGTT
TCCAAGTTGACATGACAGAGACAAATACTTTAGAGAAAAGTAAAGAATAC
AAAAAATGGACGAAGTTACTCAAGAAAACAACCTACATCTCTTATTTTCT
CATTTTTCTTGGTGGCTTGGAAATCAATGCTGTCCAAATTTCAATGTTAT
ATTATTTGGAAGAAAGTTTTAAAATGACTCCAGACGAAGTAAGACTGTAT
TATAGTCTAGCTGAAGCATTTAATGCTTTAGGTCAATGTTTTAGTGGGTT
ATTGATTGGACGTTATATGGACAGAACAAGGAATTTAAAATTATCCTGTT
TATTGATTTTATGTGCTACCATCGTTGGGAATTTATTATATTCTTTACCC
GTCCACGTTTCGTTTATCGTGATTGGACGATTTTTATGTGGCTTCAATGA
GGCATTCCAAGTTGCTTTTTGTGGTAAGAAAATTAATGTCTGTCTCAAAT
GTATGCGGACACACCTTTTTTAACCATGTCTCAAAATCAATTTATCTATA
CACCGCTGGAAAGATATTTTCGAGTACGTTTTTTTTTTTTAAGAAACTAG
TTTTACCAACCATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTT
TCTTACAGGTTTCTAAACTTTTTTATATAATCCGCCTATTTTCATGCAAA
GAAAAAAAAAATTGTTTTGATTGAAAGGTTCTTAAAAAACCGAATTAAAA
TGTTAAAATGTTATTTTCTCATTCCCAGCCTCAGCATGTATCTGAGATTT
TTCTTAGATTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAATGTGTTTC
TGAAGAAAAAAAAACGTGTAGAATAATCAAACAGACAGCAAGTTTAATTC
CGTTATAGCAGCTATCTGGTCTTTTTGAATGTTTATAAATAAAAACTTGA
GCAATCTGTTTAAAAATCATTCTGACCACTTTGCAGATCAGATAGTCGCT
TAAACGGAATTAGACAAGGTGTGTCGGCATTACACAAACTTACGGTACAA
TGAATTCGGACATATTTATTCCGTCCTTTTTCTTTTCATTAGGCGAATTC
AAAAGATGTTATCATAAAGAAGACGAGTTGATCCAAGTTTTGAGTTGGTA
TGAACTCTTCTTCGCCATTGGTATGGCTACTGGACCTGGTGCACCAGTCA
TTTTCTCGTGGGTCTACCTCAAAATTGGTAAGTTGTAATAGTAATGTGGA
TAGTTAATAAACAGAACCATTTTTTCTGTACTTAATTGTAATTGTAACTT
TAACCGGATCATTGATATCGTTGCGACGACTGTCGGCTATCAACGTTGGG
GATGACGTGGGTTTACAGCTGCAAGACTATTTGAAAATTATACAGTACTT
CAACCCAAAAAATAAAATTTTCCGTACTTAATATAGAATTTTATTTTCGA
ACTACAACTATGCTTTCTTGATCAAGATCTTTTTCATCCCGTTGCCTTTA
AGCTCATTAATATTCGGGTCAATAGAATGATAAAACCTTATATCCCATTG
CAGACGTTTAAATTTTTGAGGTTCAATTTTTGCAGGTGGATGGATTATCA
ATAAATACAATGCATTACACGTATTCCTTGTAGTCCTGTTAGCCCTTTTG
TTCATCATATTATGGTTCCAACTCACTGATCTATCAAAAGACCTGGATCG
TATGAGAGAGAAATTCAACATTATGTCAAAATCTTCCCATGAGGAACAAG
CATTGAAGAAAAGATCTGGAAAAATAAACAGCGGAAAAGACCGTTTAACT
AATGGTGAAATTTGCAAAAGTAACAAGCATGCTTTCGTGCCAAAAGGATC
ACGAAAACTTATGGAATGGAGAGAGCTTTTANAATTGTAGCTTTAGTCGG
ATCATCGTTACGAAGACTGTCGGCGATCAACGTTAGGATGACATGGGTTT
ACAGCTACAAGACTATTCAAAAATTATACAGTACTCTAATCCCAAAAATA
AAATTTTCCTTATCTAAATTAGATTCTTATTTTCGAACTACAATTATGCT
TTCTTGACAAAGACTTTTGTCATCCCCGTTGTCTTCAAGTCTTCATTCAT
ATTCGGGTCAATAGAATGATAATAACTTATATCCCATTTTAGAGGTTTAA
ATTTTTGAGGTTCAATTTTTGCAGGTGGATGGATGATCAATAAATACAAT
GCATTACACGTATTCCTTGTAGTCCTGTTAGCCCTTTTGTTCATCATATT
ATGGTTCCAACTCACTGATCTATCAAAAGACCTGGATCGTATGAGAGAGA
AATTCAACATTATGTCAAAATCTTCCCATGAGGAACAAGCATTGAAGAAA
AGATCTGGAAAAATAAACAGCGGAAAAGACCGTTTAACTAATGGTGAAAT
TTGCAAAAGTAACAAGCATGCTTTCGTGCCAAAAGGATCACGAAAACTTA
TGGAATGGAGAGAGCTTTTACAAATCGATATCATTTCGTTATGTACGTGT
TATACCATAATAAGATATTGTACTAATGCATCTGTGGCATTAATTACAAT
GGACGCTGCTACACTATTCCATTGGCCAGTCAGTTGGATTTCATGGCTTA
CCATAGCTGGAGCTTGCACTCATTTTCTTGTGATAACAACGCTGATAAAA
TGCCGTGTCTTCAAAGGACTCAGAAGAAACTATTTCTTCTACCTATCAGC
GTTAAATCTAACCTTCGTCATGCTTGCTATCATCCCATTACCAAGGATTG
ACAATTTTAAAAGTTACACACTCCAATTACTTTATTTGGCGTTTCTAATC
CTTGCTAAAGGCTGGACCTTTTTCAATGCCCAGTCAGCAGGGAAAATTTT
ATTGTTCAACACAGTAACGCCAGAGAACTCTTGCCTGATTGACAGTATTA
GATCGTCTGTCGGTTCTCTGGCTCGACTGTTTGCTTTTTCCACGAGTTTC
TTATGTTTTAAATATCCAGGTTATTTTATTTTACCAGCAGGAACTATTTT
GTTTATAGGGAATTGTGTTATAGTTTACAGATATAAGGTTTTACTGTATA
ATAAGAGTAAGGGTGTGAAGTAAAATGCATTTACGACAGTTTATATGGAA
TACTACTAATGGATACCCCTAAAAATCTACAACAAAAAAAGGTAACCCCT
ATATCATGATAGAGAAAACAGTAAGGGCATAAACTTTTTCTGGCGAGTTA
GGCTACCTATGAATTTCTTCCTTGGTTAAGGTATTTTGTAAAAGCCGCTA
AGAAAACTTTTATTGCTCGGTGAAAAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066979-exon-scaffold_462-1575043694:381779..382301 | TCONS_00066979-exon-scaffold_462-1575043694:381779..382301 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1575043694:381025..381159 | TCONS_00066979-exon-scaffold_462-1575043694:381025..381159 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1575043694:378970..380077 | TCONS_00066979-exon-scaffold_462-1575043694:378970..380077 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1510915933:381779..382301 | TCONS_00066979-exon-scaffold_462-1510915933:381779..382301 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1510915933:381025..381159 | TCONS_00066979-exon-scaffold_462-1510915933:381025..381159 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1510915933:378970..380077 | TCONS_00066979-exon-scaffold_462-1510915933:378970..380077 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1491911889:381779..382301 | TCONS_00066979-exon-scaffold_462-1491911889:381779..382301 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1491911889:381025..381159 | TCONS_00066979-exon-scaffold_462-1491911889:381025..381159 | Clytia hemisphaerica | exon |
| TCONS_00066979-exon-scaffold_462-1491911889:378970..380077 | TCONS_00066979-exon-scaffold_462-1491911889:378970..380077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:378970..382301 - |
Blast
The following BLAST results are available for this feature:
|
