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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067540 ID=TCONS_00067540|Name=TCONS_00067540|organism=Clytia hemisphaerica|type=transcript|length=1124bp
aagaaaaaaaagacaaacaaaaaaacaaacaaaaaaaacaaaaataaaca
acaaaaaataataaaaaatgccCACCAAAAGAGCTGATATCAGCCAAAGT
CCCCTGAGGCACGACTATAAACGCCACTACGAAAGTCCACTGAGGCACGA
CTATAAACGCCACTCGAACTTACAATACTTGCAATGCCAATATATAAATA
AAGAACCCTTTGCGTACGATACAAGTTTTTTGCTAATTACTCAGCTTATT
GTAGATGGAGATGTAGAATTAAATCCAGGGCCAATTAACAATACAATTAA
ATCTCCAACAGGAaggccaaaaaagaaaaagtgttttCGAGGAACTCCAA
ATAACATACATAACGATACTGTGAATCCCCTCAGAGAAAACAAACCATTA
GGATTGAAAAATCTAGGTCAAAATGTCTGTTTCTTCAATTCAGTCATTCA
ATCACTATATACTATTGATAGCTTCCGCGAATTTGTTATAACTCTTGATA
CCAATGACTCCAGTACTTTAGCAATCAAAGACTTATTCTTAACAATAGAA
AGCTCTGAATCTCCCATAGAAACATACGAATTCATAAAGTCTATAGTACT
ACCAGGCTACGATTATAGACAACGAGAACAATTTGATGCTCAAGAGTGTG
TAAATTCTATTTTGAACCATGTGTATCAagttcattttaatgaaattccT
GCAGACAATTCATTTCGAGTGTCATTTTTGGAATGTCAAAGATGCAATAA
TCCTTCTGAACGGACAGAATACTATAATATGTGTCGGATTCAatttccca
gtccttttagtcctgataattcgatgaaaaatttaattgagAAATTAACT
AATGATCCTTACGGTGAACTTATTGAAGACTACGTATGCTTAAATTGCTC
AATAAGAACAAATGTCACAAAAAGTAGAACCTTATTTAATGTTTCTGATG
CCTTGATCATTCAACTTGTAATTTTTTGCTATGATCAAACCGCTGGACGC
TTGAAGAAATTAGTTCCAAATTTAAATATTGAAACAGAAATAGAAAACGT
TCTTCTCGGGACACTTGAATTACAAGCAATTGTTTATCATCACGGTGATA
CACCTGATAGTGGTCATTATACNN Run BLAST on NCBI protein sequence of TCONS_00067540-protein >TCONS_00067540-protein ID=TCONS_00067540-protein|Name=TCONS_00067540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MPTKRADISQSPLRHDYKRHYESPLRHDYKRHSNLQYLQCQYINKEPFAY
DTSFLLITQLIVDGDVELNPGPINNTIKSPTGRPKKKKCFRGTPNNIHND
TVNPLRENKPLGLKNLGQNVCFFNSVIQSLYTIDSFREFVITLDTNDSST
LAIKDLFLTIESSESPIETYEFIKSIVLPGYDYRQREQFDAQECVNSILN
HVYQVHFNEIPADNSFRVSFLECQRCNNPSERTEYYNMCRIQFPSPFSPD
NSMKNLIEKLTNDPYGELIEDYVCLNCSIRTNVTKSRTLFNVSDALIIQL
VIFCYDQTAGRLKKLVPNLNIETEIENVLLGTLELQAIVYHHGDTPDSGH
YX Run BLAST on NCBI transcript from alignment at scaffold_470:4354..5477 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067540 ID=TCONS_00067540|Name=TCONS_00067540|organism=Clytia hemisphaerica|type=transcript|length=1124bp|location=Sequence derived from alignment at scaffold_470:4354..5477 (Clytia hemisphaerica)
NNGTATAATGACCACTATCAGGTGTATCACCGTGATGATAAACAATTGCT
TGTAATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCTGTTTCAATATT
TAAATTTGGAACTAATTTCTTCAAGCGTCCAGCGGTTTGATCATAGCAAA
AAATTACAAGTTGAATGATCAAGGCATCAGAAACATTAAATAAGGTTCTA
CTTTTTGTGACATTTGTTCTTATTGAGCAATTTAAGCATACGTAGTCTTC
AATAAGTTCACCGTAAGGATCATTAGTTAATTTctcaattaaatttttca
tcgaattatcaggactaaaaggactgggaaatTGAATCCGACACATATTA
TAGTATTCTGTCCGTTCAGAAGGATTATTGCATCTTTGACATTCCAAAAA
TGACACTCGAAATGAATTGTCTGCAggaatttcattaaaatgaactTGAT
ACACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAATTGTTCT
CGTTGTCTATAATCGTAGCCTGGTAGTACTATAGACTTTATGAATTCGTA
TGTTTCTATGGGAGATTCAGAGCTTTCTATTGTTAAGAATAAGTCTTTGA
TTGCTAAAGTACTGGAGTCATTGGTATCAAGAGTTATAACAAATTCGCGG
AAGCTATCAATAGTATATAGTGATTGAATGACTGAATTGAAGAAACAGAC
ATTTTGACCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTGAGGGGAT
TCACAGTATCGTTATGTATGTTATTTGGAGTTCCTCGaaaacactttttc
ttttttggcctTCCTGTTGGAGATTTAATTGTATTGTTAATTGGCCCTGG
ATTTAATTCTACATCTCCATCTACAATAAGCTGAGTAATTAGCAAAAAAC
TTGTATCGTACGCAAAGGGTTCTTTATTTATATATTGGCATTGCAAGTAT
TGTAAGTTCGAGTGGCGTTTATAGTCGTGCCTCAGTGGACTTTCGTAGTG
GCGTTTATAGTCGTGCCTCAGGGGACTTTGGCTGATATCAGCTCTTTTGG
TGggcattttttattattttttgttgtttatttttgttttttttgtttgt
ttttttgtttgtcttttttttctt Coding sequence (CDS) from alignment at scaffold_470:4354..5477 >TCONS_00067540 ID=TCONS_00067540|Name=TCONS_00067540|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_470:4354..5477 (Clytia hemisphaerica)
NGTATAATGACCACTATCAGGTGTATCACCGTGATGATAAACAATTGCTT
GTAATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCTGTTTCAATATTT
AAATTTGGAACTAATTTCTTCAAGCGTCCAGCGGTTTGATCATAGCAAAA
AATTACAAGTTGAATGATCAAGGCATCAGAAACATTAAATAAGGTTCTAC
TTTTTGTGACATTTGTTCTTATTGAGCAATTTAAGCATACGTAGTCTTCA
ATAAGTTCACCGTAAGGATCATTAGTTAATTTctcaattaaatttttcat
cgaattatcaggactaaaaggactgggaaatTGAATCCGACACATATTAT
AGTATTCTGTCCGTTCAGAAGGATTATTGCATCTTTGACATTCCAAAAAT
GACACTCGAAATGAATTGTCTGCAggaatttcattaaaatgaactTGATA
CACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAATTGTTCTC
GTTGTCTATAATCGTAGCCTGGTAGTACTATAGACTTTATGAATTCGTAT
GTTTCTATGGGAGATTCAGAGCTTTCTATTGTTAAGAATAAGTCTTTGAT
TGCTAAAGTACTGGAGTCATTGGTATCAAGAGTTATAACAAATTCGCGGA
AGCTATCAATAGTATATAGTGATTGAATGACTGAATTGAAGAAACAGACA
TTTTGACCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTGAGGGGATT
CACAGTATCGTTATGTATGTTATTTGGAGTTCCTCGaaaacactttttct
tttttggcctTCCTGTTGGAGATTTAATTGTATTGTTAATTGGCCCTGGA
TTTAATTCTACATCTCCATCTACAATAAGCTGAGTAATTAGCAAAAAACT
TGTATCGTACGCAAAGGGTTCTTTATTTATATATTGGCATTGCAAGTATT
GTAAGTTCGAGTGGCGTTTATAGTCGTGCCTCAGTGGACTTTCGTAGTGG
CGTTTATAGTCGTGCCTCAGGGGACTTTGGCTGATATCAGCTCTTTTGGT
Gggcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067540-exon-scaffold_470-1491911889:4354..5477 | TCONS_00067540-exon-scaffold_470-1491911889:4354..5477 | Clytia hemisphaerica | exon |
| TCONS_00067540-exon-scaffold_470-1510915933:4354..5477 | TCONS_00067540-exon-scaffold_470-1510915933:4354..5477 | Clytia hemisphaerica | exon |
| TCONS_00067540-exon-scaffold_470-1575043694:4354..5477 | TCONS_00067540-exon-scaffold_470-1575043694:4354..5477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_470 | supercontig | scaffold_470:4354..5477 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
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