TCONS_00067611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067611
Unique NameTCONS_00067611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067611 ID=TCONS_00067611|Name=TCONS_00067611|organism=Clytia hemisphaerica|type=transcript|length=603bp
gattggttgaaagtgacgtattaacCGATTTTACATCACTtaaaaccaat
cagctattgggtccatgatgtaatatcagaagatattgcaatggtgTATA
TAACGAATGCCaactattcaaattttttgcttCCCTGTTTCGTGACTTTG
TtgagaaatcagaaaaaagaaaaagtgaatgaCATTTTAAAAACCAACAG
AATTTTATACAGAtgaaattttcttcgagtttTTACCACAAGGGGTACAA
ACTGGTACTAATTAAGTTATTTCTTGGGAAAATTCCATTAGAAATTTCTG
AGATTGACTTTTTTCTTACAAACAATGGGTCGTCAACGATATTTCATCAT
CATTTGGATGAGTTTGACAATACTGGTCCACACCGATGGAAATCTTTGGG
AACCAACAAACATCACACGAATAGACGAACAAAATGGAAGGACTGTATCC
ATCAAATTACACACATTCAAAAAATGGAGGGTGGGAGCGCTGGCGAGAGC
TTGGTTACCAANCCACACCGATGGAAATCTTTGGGAACCAACAAACATCA
CACGATTAGACGAACAAAATGGAAGGACTGTATCCATCAAATTACACACA
TTC
Run BLAST on NCBI

protein sequence of TCONS_00067611-protein

>TCONS_00067611-protein ID=TCONS_00067611-protein|Name=TCONS_00067611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MKFSSSFYHKGYKLVLIKLFLGKIPLEISEIDFFLTNNGSSTIFHHHLDE
FDNTGPHRWKSLGTNKHHTNRRTKWKDCIHQITHIQKMEGGSAGESLVTX
PHRWKSLGTNKHHTIRRTKWKDCIHQITHI
Run BLAST on NCBI

transcript from alignment at scaffold_471:170363..170965

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067611 ID=TCONS_00067611|Name=TCONS_00067611|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at scaffold_471:170363..170965 (Clytia hemisphaerica)
GAATGTGTGTAATTTGATGGATACAGTCCTTCCATTTTGTTCGTCTAATC
GTGTGATGTTTGTTGGTTCCCAAAGATTTCCATCGGTGTGGNTTGGTAAC
CAAGCTCTCGCCAGCGCTCCCACCCTCCATTTTTTGAATGTGTGTAATTT
GATGGATACAGTCCTTCCATTTTGTTCGTCTATTCGTGTGATGTTTGTTG
GTTCCCAAAGATTTCCATCGGTGTGGACCAGTATTGTCAAACTCATCCAA
ATGATGATGAAATATCGTTGACGACCCATTGTTTGTAAGAAAAAAGTCAA
TCTCAGAAATTTCTAATGGAATTTTCCCAAGAAATAACTTAATTAGTACC
AGTTTGTACCCCTTGTGGTAAaaactcgaagaaaatttcaTCTGTATAAA
ATTCTGTTGGTTTTTAAAATGtcattcactttttcttttttctgatttct
caACAAAGTCACGAAACAGGGaagcaaaaaatttgaatagttGGCATTCG
TTATATAcaccattgcaatatcttctgatattacatcatggacccaatag
ctgattggttttaAGTGATGTAAAATCGgttaatacgtcactttcaacca
atc

Coding sequence (CDS) from alignment at scaffold_471:170363..170965

>TCONS_00067611 ID=TCONS_00067611|Name=TCONS_00067611|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_471:170363..170965 (Clytia hemisphaerica)
AATGTGTGTAATTTGATGGATACAGTCCTTCCATTTTGTTCGTCTAATCG
TGTGATGTTTGTTGGTTCCCAAAGATTTCCATCGGTGTGGNTTGGTAACC
AAGCTCTCGCCAGCGCTCCCACCCTCCATTTTTTGAATGTGTGTAATTTG
ATGGATACAGTCCTTCCATTTTGTTCGTCTATTCGTGTGATGTTTGTTGG
TTCCCAAAGATTTCCATCGGTGTGGACCAGTATTGTCAAACTCATCCAAA
TGATGATGAAATATCGTTGACGACCCATTGTTTGTAAGAAAAAAGTCAAT
CTCAGAAATTTCTAATGGAATTTTCCCAAGAAATAACTTAATTAGTACCA
GTTTGTACCCCTTGTGGTAAaaactcgaagaaaatttcaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042220XLOC_042220Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067611-proteinTCONS_00067611-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067611-exon-scaffold_471-1491911889:170363..170965TCONS_00067611-exon-scaffold_471-1491911889:170363..170965Clytia hemisphaericaexon
TCONS_00067611-exon-scaffold_471-1510915933:170363..170965TCONS_00067611-exon-scaffold_471-1510915933:170363..170965Clytia hemisphaericaexon
TCONS_00067611-exon-scaffold_471-1575043694:170363..170965TCONS_00067611-exon-scaffold_471-1575043694:170363..170965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:170363..170965 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.263424	0.203907	0.0997457	0	0.0959562	0.185577	0.325139	0	0	0	0.0599695	2.98197	1.63818	0.280177	0.356329	0	0.106339	2.47052	0.643272	0.259673	0.189989	0.615822	0.469825	1.03269	1.34245	0.12347	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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