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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067580 ID=TCONS_00067580|Name=TCONS_00067580|organism=Clytia hemisphaerica|type=transcript|length=3032bpRun BLAST on NCBI transcript from alignment at scaffold_471:412355..447315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067580 ID=TCONS_00067580|Name=TCONS_00067580|organism=Clytia hemisphaerica|type=transcript|length=34961bp|location=Sequence derived from alignment at scaffold_471:412355..447315+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067580 vs. Swiss-Prot (Human)
Match: SRPK1 (SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2) HSP 1 Score: 281.567 bits (719), Expect = 8.065e-82 Identity = 128/197 (64.97%), Postives = 158/197 (80.20%), Query Frame = 3
Query: 378 SDYCTGGYHVVNIGDLFQGRYHVIRKLGWGHFSTVWLAWDLTEKKFVALKIVKSAAHYTETAIDEMKLLIKVREADPDHLGCKHVVQLLDDFKVSGIHGNHICMVFEVLGHNLLKFIIKSSYHGISIPMAKSIIRQTLAGLDYLHTKCNIIHTDVKPENILVCITEDEIQKLAVDATLASQKGK--LSKSQTATAPK 962
+DYC GGYH+V IGDLF GRYHVIRKLGWGHFSTVWL+WD+ KKFVA+K+VKSA HYTETA+DE++LL VR +DP+ + VVQLLDDFK+SG++G HICMVFEVLGH+LLK+IIKS+Y G+ +P K II+Q L GLDYLHTKC IIHTD+KPENIL+ + E I++LA +AT + G S S +TAP+
Sbjct: 60 NDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPQ 256 HSP 2 Score: 271.166 bits (692), Expect = 4.003e-78 Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 3
Query: 1674 SPFSLDNPE-ITVKIADLGNACWTNHHFTEEIQTRQYRSLEVLLGAGYGTPADIWSTACMAFELVTGDFLFEPHSSEEYSRDEDHIALIMETLGRVPKHIALNGKFSKEFFTRKGELRHIKKLKPWSLTDVMMQKYDWSRKDAEELAGFLTPMLDYVPEKRVTAAECLKHPWL 2189
+P N E + VKIADLGNACW + HFTE+IQTRQYRSLEVL+G+GY TPADIWSTACMAFEL TGD+LFEPHS EEY+RDEDHIALI+E LG+VP+ + + GK+SKEFFT+KG+L+HI KLKPW L +V+++KY+WS+++A FL PML+ +PEKR TAAECL+HPWL
Sbjct: 481 NPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWL 653 The following BLAST results are available for this feature:
BLAST of TCONS_00067580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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