|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067660 ID=TCONS_00067660|Name=TCONS_00067660|organism=Clytia hemisphaerica|type=transcript|length=1932bpRun BLAST on NCBI protein sequence of TCONS_00067660-protein >TCONS_00067660-protein ID=TCONS_00067660-protein|Name=TCONS_00067660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MVKQTIQIFCRVKPTKSQTGLYDLDEDEDSNRSLLSFTIPKDIADGLINNRun BLAST on NCBI transcript from alignment at scaffold_472:281970..301368+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067660 ID=TCONS_00067660|Name=TCONS_00067660|organism=Clytia hemisphaerica|type=transcript|length=19399bp|location=Sequence derived from alignment at scaffold_472:281970..301368+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_472:281970..301368+ >TCONS_00067660 ID=TCONS_00067660|Name=TCONS_00067660|organism=Clytia hemisphaerica|type=CDS|length=39816bp|location=Sequence derived from alignment at scaffold_472:281970..301368+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067660 vs. Swiss-Prot (Human)
Match: KIF6 (Kinesin-like protein KIF6 OS=Homo sapiens GN=KIF6 PE=1 SV=3) HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0 Identity = 363/636 (57.08%), Postives = 462/636 (72.64%), Query Frame = 3
Query: 36 MVKQTIQIFCRVKPT--KSQTGLYDLDEDEDSNRSLLSFTIPKDIADGLINNKKENYKFLFDKIFNQTTKQDEVFNAVAKPVINSVLSGFNGTIFAYGQTGSGKTFTITGGAERYVDRGIIPRTLSYIFEHITKNNNNVYSIHVSYLEIYNESGFDLLDPNHEASKLEDLPKVSFLEDNDGNIHLKNLSMQQXXXXXXXXXXXFLGDTNRMIAETPMNQASTRSHCIFTIHISARENDSATIRRAKLHLVDLAGSERVGKTGVAGTLLKEAKYINLSLHFLEQVIIALSEKTRSHIPYRNSMMTSVLRDSLGGNCMTSMIATCSVEKKNIDESISTCRFAQRVAMIKNDAILNEELDPQLMIAKLKREVQQLKDELSLATGEQYETDLTQDEKERLRVLVEAYVKNTDKEAVLNVGSDMRKINHAFYLLKGY-----AINNNTNEQPQTEGRXXXXXXXXXXXXXXXXXXVITTPAQHHPTDNTYLGDTQELQKLKDLILQRDNEINILVNMLKKEKQRNGKTSSSSSFVNQTLKQSSERKFDXXXXXXXXXXXXXXXXXXXXX-RMIGRQHQRNANHILRENVKKQKDQMSLGRQEAFELFKRDYAENGLIEENKKGLKSRYTDAKRLGEQVNAA 1919
MVKQTIQIF RVKP K Q G+Y +DEDE SL +P+D+ADG +NNK+E+YKF F +IF+Q Q+ VF +AKPV SVL+G+NGTIFAYGQTGSGKTFTITGGAERY DRGIIPRTLSYIFE + K+++ +Y+ H+SYLEIYNE G+DLLDP HEAS LEDLPKV+ LED D NIHLKNL++ QA EEEALNLLFLGDTNRMIAETPMNQASTRSHCIFTIH+S++E SAT+R AKLHLVDLAGSERV KTGV G LL EAKYINLSLH+LEQVIIALSEK RSHIPYRNSMMTSVLRDSLGGNCMT+MIAT S+EK+N+DESISTCRFAQRVA+IKN+A+LNEE++P+L+I +L++E+Q+LKDEL++ TGEQ LT+ E +L L+ +++++ D ++ L VG+DMRK++H F+ LK + NN T ++ D +E +KL+D++ QRDNEINILVNMLKKEK++ + + + +QS F N SSAP + ++G++ + +L + + +++MSLG QEAFE+FKRD+A++ I++NK+ LK R+++AK LGE +N A
Sbjct: 1 MVKQTIQIFARVKPPVRKHQQGIYSIDEDEKLIPSL-EIILPRDLADGFVNNKRESYKFKFQRIFDQDANQETVFENIAKPVAGSVLAGYNGTIFAYGQTGSGKTFTITGGAERYSDRGIIPRTLSYIFEQLQKDSSKIYTTHISYLEIYNECGYDLLDPRHEASSLEDLPKVTILEDPDQNIHLKNLTLHQATTEEEALNLLFLGDTNRMIAETPMNQASTRSHCIFTIHLSSKEPGSATVRHAKLHLVDLAGSERVAKTGVGGHLLTEAKYINLSLHYLEQVIIALSEKHRSHIPYRNSMMTSVLRDSLGGNCMTTMIATLSLEKRNLDESISTCRFAQRVALIKNEAVLNEEINPRLVIKRLQKEIQELKDELAMVTGEQRTEALTEAELLQLEKLITSFLEDQDSDSRLEVGADMRKVHHCFHHLKKLLNDKKILENN------------------------------TVSSESKDQDCQEPLKEEEYRKLRDILKQRDNEINILVNMLKKEKKKAQEALHLAGMDRREFRQSQSPPFRLGNPEEGQRMRLSSAPSQAQDFSILGKR-----SSLLHKKI-GMREEMSLGCQEAFEIFKRDHADSVTIDDNKQILKQRFSEAKALGESINEA 599 The following BLAST results are available for this feature:
BLAST of TCONS_00067660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.