TCONS_00067834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067834
Unique NameTCONS_00067834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067834 ID=TCONS_00067834|Name=TCONS_00067834|organism=Clytia hemisphaerica|type=transcript|length=1219bp
TTTTGTTGTAGATCAAAGGTTTCATTGCACTACTGTTTTCTTCTCCACGG
GTTGGTGCGgaatttaaatttgtttttgatttcttgtttttctcaaaatg
gGTGAGAAAAAGAGGAGAATGATGCGCCTAATCCGCCATTATGTTCCGAT
CATTCTTTCTTAATGTTAATATGGAAATAATTATTCTATTATGGTTTCTT
TGATCGATTAAGCAAGGGGGCATGAGTATGAGTGACGTCATCTCCATGCA
ATGCGGTTATAAATAGAGGAGGTGcagattggttgaaagttttgaaGGAA
TTTTGTATAAATTTGATGCGCACATGAGTTGTGAGAGTGACGGCGGTGGA
TTATTTTGTAAGGCgaaaaaactgtcaaaaatatttgaaacttgaaattg
gAAGGATTGTGTATGACAAGTATTCGATTACAAGTGACAACAAAGTAGAG
TCCCTACTCATGATAAGAAACTGGAATTCTTTTGCCGATATCTTTTTGAC
GGACTAAcatttatttttggattttgatgatattAACAGAAAGAGAAAGG
AACGATTGAATCGAAGGAAAATTTTCGACGAAAGTAAACAACCCTGAAAT
TACTGGAACGGATATTTTAATTCAAAGACTTTACATTTTCAATGAGAGAT
ATGATGGGAATCAATTTGACGCAGCAAAATTTgctcatttttggactttg
tttgTCTTGTTTGGTTGCGCCCTTGTCTGCGACGTTCGAAGCGTGTCGAA
GGAATTCACAATGCAAGAAGGGATTTTGTTGTGCGGGACCCCCGTCTTTT
GGTTTTTGTATGCGAAACAAGAAGCTTGGTGAATTATGCAGTGCGTCACA
TTTGttatcaaagaCGTTTGGTTGCGGGTGTGAAGAGGGCTTAACGTGTG
CCATCGTTTCACGTAAGGGTCCATACACACGACTACGTTGCGTTGAAATT
CCTGCGACGGTCAAAGTGAAGATCGACGACAAACAAAAGAATTCAACGGA
CACTATCACCAAATTATTGACAGCTTACGAGCTGAGACATTTATTAGAAG
TGATTAAAGAACGACCTGTCATCAAAACTCCAGTCAGTAGTGACACCCCT
GATGAAACATGACGGAGATAATTGTTTATTAGGGAGATAATGATAATGTA
GAAGTTATTCTAATGACTGGTTGGTTTTACATTTGTGGTGGAATTTTGTA
TCTCCATCTTGAACTTGNN
Run BLAST on NCBI

protein sequence of TCONS_00067834-protein

>TCONS_00067834-protein ID=TCONS_00067834-protein|Name=TCONS_00067834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MRDMMGINLTQQNLLIFGLCLSCLVAPLSATFEACRRNSQCKKGFCCAGP
PSFGFCMRNKKLGELCSASHLLSKTFGCGCEEGLTCAIVSRKGPYTRLRC
VEIPATVKVKIDDKQKNSTDTITKLLTAYELRHLLEVIKERPVIKTPVSS
DTPDET
Run BLAST on NCBI

transcript from alignment at scaffold_476:233755..239424-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067834 ID=TCONS_00067834|Name=TCONS_00067834|organism=Clytia hemisphaerica|type=transcript|length=5670bp|location=Sequence derived from alignment at scaffold_476:233755..239424- (Clytia hemisphaerica)
TTTTGTTGTAGATCAAAGGTTTCATTGCACTACTGTTTTCTTCTCCACGG
GTTGGTGCGGAATTTAAATTTGTTTTTGATTTCTTGTTTTTCTCAAAATG
GGTGAGAAAAAGAGGAGAATGATGCGCCTAATCCGCCATTATGTTCCGAT
CATTCTTTCTTAATGTTAATATGGAAATAATTATTCTATTATGGTTTCTT
TGATCGATTAAGCAAGGGGGCATGAGTATGAGTGACGTCATCTCCATGCA
ATGCGGTTATAAATAGAGGAGGTGCAGATTGGTTGAAAGTTTTGAAGGAA
TTTTGTATAAATTTGATGCGCACATGAGTTGTGAGAGTGACGGCGGTGGA
TTATTTTGTAAGGCGAAAAAACTGTCAAAAATATTTGAAACTTGAAATTG
GAAGGATTGTGTATGACAAGTATTCGATTACAAGTGACAACAAAGTAGAG
TCCCTACTCATGATAAGAAACTGGAATTCTTTTGCCGATATCTTTTTGAC
GGACTAACATTTATTTTTGGATTTTGATGATATTAACAGAAAGAGAAAGG
AACGATTGAATCGAAGGAAAATTTTCGACGAAAGTAAACAACCCTGAAAT
TACTGGAACGGATATTTTAATTCAAAGACTTTACATTTTCAATGAGAGAT
ATGATGGGAATCAATTTGACGCAGCAAAATTTGCTCATTTTTGGACTTTG
TTTGTCTTGTTTGGTTGCGCCCTTGTCTGCGGTAAGATTCTTGCAAAAGA
TTATTTGGGTTATCAATCATTTTCCTGGGATCGCTCTTGTCGCTTATTGT
ACACGTNTGTCTGCGGTAAGATTCTTTCTTATCAATCATTTTCCTGGGAT
CGTTCTTGTCGCTTATTGTACACGTTTGTCGGTTTAAATTTGAATTGTCG
GTTTAAATTTGAATGGTCGGTTATCGCTTAAGGCTTAACTTAAGATGATT
TTTACAAAGAACAACCCCTGTCCATCGGAGTAGAGACTTTCCGCTATGTT
TTTCCGCTTCGATTACACATAGAGACGCCTCGGTTGGGCGATACGTGCGT
TTTTCATTTGGAGATGGAAGGCTGTTGTTGTTTTTGTTTTTGATTTGACT
TGGAGGCGATTAGTGCGGGATAATGAGATGACTTAATCGGATTAAGAAGA
CGCTAATAACTTTCCAATGGCTTGTTTTGGTGCACTCTCTACCTTCCTTC
TTTTTGATTATGTTTTATTATGTTTTCTTTAGAAGAGTCTCTTGTTGTTG
AATTTTGAGCTTGTTTCTTCTGCCTTCGTGACGACTTCAGCCCTCACGGC
CGTTCGTGATTTCATTAGTTAACATCTTTCTTCCGCCCTTTAACATGACA
CTCCTTTGATATTGCTTACCTATTCTCTGAAACCTCAAAAGTATAGGAGC
CGGTGTTCATTTGTTTGATGTCCGGGAATTTTTGCAACCTGTACACTGAA
CCAAAAAATGAATTGAAAGTATAGCTATTGTGTACTTTTAATAGATCGTC
TTAATGACCAATTAGTGGTCACGTAATTCGCATGATTTATGGAAAAAGTT
AAACCTCTTTTCAAGTGTTGTTACCTATTTTTAAAGTTGTTTGTTTGGCT
GGCCTAATAAGATGTTCGTTATAAGAAAACGATTAATATTGATTATAAAG
AAATGTGTTTTCGCTTTCGATTTGTAACAGGGTTAAGATACTTTTGATAT
TTTTTCGTGCTTTATACAATCTGTTGATTGGAGGTAGATTAGTAAGACTT
TTTCATGTCGCTCTTTGATAATCGGTGAAACTTATTTATCGAGTTTTATT
TCGTGCTCTTCTTATAAAATCCAAATCGTTTTGACAAATTGTTCGAAAAT
TAAATCTTGTCATGTTTTCGTTGCATTCTTGCTTCTGCTGATGTAAACAA
ACCAAATCAAATATTTCGGCCTAATCACTCACTTCCGCTTTTCCGACAAA
ATGAACAAAATAGCTAACCTCTCCATCCCTTTTTGGAATTTTCGGTATTC
ACTGCTCACCTAATTGTACATTGATTGAGTTTTTAGAAATGGTGAGTTTT
TGTTAACATTCTTAGTGATTTAGCACTGAAGATTGCCATCCTGGATGGCA
TGAAACTTTGAGTACGAAATTAACTTAAATTGTTTTCTTTCTGAAACTAG
TGATTTGGTAATCTTAGAAAACTATTCGGGCAAAACCCTTTTTTTAAATA
ATTCAAGATAGTTTTTCTCTGGAATGGTGTGGGGACACAACTCAATTACT
GATTTTCGTCACTAATAAATATTCTTTCAAACAGAGAGACAATATCATAG
AGGAATCAATTTGAATTACGTCAAACTCNACTAAGAAGTATTCTTTCAAA
CAGAGAGACAATATCGTAGAGGAATTAATTTGAATTACGTCAAACTCGCC
CACTCTTTTCGTTTCCACGTTTTTAAGCAGTAAAAGTTCATCGATATAGA
TACCACTTGTACAAGAACTCCACCTCTCAAGAACTTAAGTGGGGCGCAAA
CCGGCCAACATGTTGGCCGAAATGTTGGTCGAAAATGTTGGCCGGTTTGC
GCCCCACTTTAACCTGGCAGCCTCTTTAATTAAACGTGAGATTTTGCACG
AACTTACTGAAAAGCTTGAAAGCATAAAAATCGACCAAACAGTGACAAAT
CAAAGGTTTCTTTGGATAAATAAAACCGATCACAGAACATGGACATTTAA
CATTTTTTGATGGTCAAAGGTCACAGTTTTGAATGTTTCTTTTCTGTCAA
TCAAACTTAATTCTTTGGCGTTGGATTTCGTTGATGAAATCAATTGGTCG
TGGTGGTGACGTCATCACTGAGTTCTTGTGTGTTCTTATTGGTTGATTTC
CTACTAAACCTTTGAAGTGCTAAGGATAGTGCTGGAAACGAACGAACCCA
TGCATAATCCCACACATAATTTTTGGGTATTACATAGGGTATAAAAATTT
TGTGATTGACTTATTCTTATTGAAGTCTAATTAGATAAATTTCATTTTGA
TCAGCCAAATTTTTAAAGTGTTCAATTTAAATCTATCGAACTCAGCATAT
TGATTCTGTTTTAAATTAGGATAGATTTTCCACTGGAAAAATAGTTTCTA
TTTATGAAAAGGTAGCACTCCTTGATCAACAGGCTCCAATGGCATCTTTT
CATTGTTTGGGTTTGTTTATTTTAAGTCGGTTGTACATAGACGCGTGGTG
CATGTAGCGTGCTGTTTAAGCTGACAGCTTACGTGATGCCGATGATAAAA
AAGCTCATGTAAACATCCCTTTATGGAAAGTTCGTGTAAACAAGAACCCC
ACCTCTCGCTTGAATATATATTATTTTCATTCCGAGTTAGTCCAAAAGTA
GGGAGATGCTAAGAAGCTGTTGAGGATCCAAATGTTATAGATGTCCTCCC
CATTGATGAGTTATGAAGTATTTGCGCTACTACGAACTTCTTTTGTTCTG
TTTTTCTGTTGAACCTAATACCTGACATACCATACATTCATGGAGAAATT
CTTTGCCAGATGATTTTTTTGGCAAAGAGTTGTGGTCGTGGATTTTTATG
ATGGTCTGAATGAATGAGGCTGTTTGTTTGTTTGTGTCTGTCAAATTAAT
GGAAGGAAAATTGAAATTCCTTGTTTGAAGAAATGAGATTAAGGATAATC
GGCCCTTGATCGTTTCTCGGTTGCTATGGTTACAAGACGATGCAGAGCAG
GCTGTCATAGGTTTAAGAAAAATGAGAAAACTTTCCTAACGATCATTCCC
TTTCATTTGCAGTTAAATACCCCCCCCCTCACTCCACATACTCGTTCAAA
TATAAAACAAAATTCTCACATGAGATTTCTTGAATAATTTCTAAAACATT
ATTATTCTCTCAATTTTAGACGTTCGAAGCGTGTCGAAGGAATTCACAAT
GCAAGAAGGGATTTTGTTGTGCGGGACCCCCGTCTTTTGGTTTTTGTATG
CGAAACAAGAAGCTTGGTGAATTATGCAGTGCGTCACATTTGGTAAGTTG
GAATTTTTTCCTATCTTATATGGTCAGTGTTGTTTGAATCTCATCATAGA
GACGTCGAACTATGGTCCCGGTAAAATTTATAATTTCAAATTTCTCCAGT
GTATTTTGAAACAGATGTTTTTACTTGTTTTTCTTTAATTTGAGATTTCA
CATTGGGTGATAAATGGCGCTTCTCATAACATTTTGATTCGAACATTCTT
GAAAGTAGCGGATTTCTTTGACAGATTTACTTCCTGCTTTTAAAGTACCC
AGAATCTTTTACTTGCTGTGAATGACACCACAACCTAATAAAGGGATGAA
TTTTATCAATTGGATTTAATATGACTAATTCGTTACAAATCTTTTCACGT
TTTGCTCAAAAGAGAAGAAGCTTCTTTTCCTGTTATTCTATTTTTGTTAC
TTGTGGCATTCTATCCGTGTTATTGATGCGCCAAATCAATAAAAAGAATC
CTGAGGTCACCATTTTGAGATAAGGATGAAAATTGTCTCAAAAATTTGTT
TACGGCAAAGATGAGAAGTCAAAATATTTCAAGTATTAAAAAATTGCTTT
TTAATTTAAAAGACTTTTACTTCCTCTTATAAAATTGATACCTCACTACC
CCCTGGACAGATTCAAAAGATCTACAGTATCACAGTTAGAATTCACTTCA
AACCGGGGGTCATTTAGTGAACTATATCCGACCAACTTGAGGTTTTAGGC
GACACTCCTTGATCTGTGAGAAATTTCAAAAATGACAAAAACAAGTCAGT
TGTTTACGCTGAGCAGTTATTTTGAACGCTTTTCATAAAAAAATCAGTTA
TTGTCAACCCTCAGAATGCGAGATAAGAAAAATGCCTGAGGCTTTATGTT
TTATAATGTCAAAACATGTCAAAACAAAGAGATAAAAGTCTGGACTTGGA
TATTTAGATACAATCAGATTGTAATAACATTCGCGTTATGTTCCTTTAAA
ACCTTTTTAACCTTTTCACTCAACGGAATATTCACCGCTTTACTGACTTG
ACCTTTTCGCCCGACGGGATATCCGGCCGCTACTCATATGGCCAAATTAA
CAAATTCTTTCTGTCAAAAATAGCGCCCATGGTCCATTAATATAATTTCG
TATTAATTTGAACAAATTAATTTGTTTGAGAATATCTGAAATATTTTCAT
GGCAACCCGGACATAAATCAACCTTTGATTTTAAATGAAGATGTTTTTCC
ACGCTGTCAGAATAACCGGAATCACGAAGGTTAAAATACAAACAAAATTA
ATTGGTCATGTTTATTGAAGAACAGAAATTATAACATTTCTGTTTACATT
TTCAGTTATCAAAGACGTTTGGTTGCGGGTGTGAAGAGGGCTTAACGTGT
GCCATCGTTTCACGTAAGGGTCCATACACACGACTACGTTGCGTTGAAAT
TCCTGCGACGGTCAAAGTGAAGATCGACGACAAACAAAAGAATTCAACGG
ACACTATCACCAAATTATTGACAGCTTACGAGCTGAGACATTTATTAGAA
GTGATTAAAGAACGACCTGTCATCAAAACTCCAGTCAGTAGTGACACCCC
TGATGAAACATGACGGAGATAATTGTTTATTAGGGAGATAATGATAATGT
AGAAGTTATTCTAATGACTGGTTGGTTTTACATTTGTGGTGGAATTTTGT
ATCTCCATCTTGAACTTGNN

Coding sequence (CDS) from alignment at scaffold_476:233755..239424-

>TCONS_00067834 ID=TCONS_00067834|Name=TCONS_00067834|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_476:233755..239424- (Clytia hemisphaerica)
TTATCAAAGACGTTTGGTTGCGGGTGTGAAGAGGGCTTAACGTGTGCCAT
CGTTTCACGTAAGGGTCCATACACACGACTACGTTGCGTTGAAATTCCTG
CGACGGTCAAAGTGAAGATCGACGACAAACAAAAGAATTCAACGGACACT
ATCACCAAATTATTGACAGCTTACGAGCTGAGACATTTATTAGAAGTGAT
TAAAGAACGACCTGTCATCAAAACTCCAGTCAGTAGTGACACCCCTGATG
AAACATGAACGTTCGAAGCGTGTCGAAGGAATTCACAATGCAAGAAGGGA
TTTTGTTGTGCGGGACCCCCGTCTTTTGGTTTTTGTATGCGAAACAAGAA
GCTTGGTGAATTATGCAGTGCGTCACATTTGATGAGAGATATGATGGGAA
TCAATTTGACGCAGCAAAATTTGCTCATTTTTGGACTTTGTTTGTCTTGT
TTGGTTGCGCCCTTGTCTGCGTTATCAAAGACGTTTGGTTGCGGGTGTGA
AGAGGGCTTAACGTGTGCCATCGTTTCACGTAAGGGTCCATACACACGAC
TACGTTGCGTTGAAATTCCTGCGACGGTCAAAGTGAAGATCGACGACAAA
CAAAAGAATTCAACGGACACTATCACCAAATTATTGACAGCTTACGAGCT
GAGACATTTATTAGAAGTGATTAAAGAACGACCTGTCATCAAAACTCCAG
TCAGTAGTGACACCCCTGATGAAACATGAACGTTCGAAGCGTGTCGAAGG
AATTCACAATGCAAGAAGGGATTTTGTTGTGCGGGACCCCCGTCTTTTGG
TTTTTGTATGCGAAACAAGAAGCTTGGTGAATTATGCAGTGCGTCACATT
TGATGAGAGATATGATGGGAATCAATTTGACGCAGCAAAATTTGCTCATT
TTTGGACTTTGTTTGTCTTGTTTGGTTGCGCCCTTGTCTGCGTTATCAAA
GACGTTTGGTTGCGGGTGTGAAGAGGGCTTAACGTGTGCCATCGTTTCAC
GTAAGGGTCCATACACACGACTACGTTGCGTTGAAATTCCTGCGACGGTC
AAAGTGAAGATCGACGACAAACAAAAGAATTCAACGGACACTATCACCAA
ATTATTGACAGCTTACGAGCTGAGACATTTATTAGAAGTGATTAAAGAAC
GACCTGTCATCAAAACTCCAGTCAGTAGTGACACCCCTGATGAAACATGA
ACGTTCGAAGCGTGTCGAAGGAATTCACAATGCAAGAAGGGATTTTGTTG
TGCGGGACCCCCGTCTTTTGGTTTTTGTATGCGAAACAAGAAGCTTGGTG
AATTATGCAGTGCGTCACATTTGATGAGAGATATGATGGGAATCAATTTG
ACGCAGCAAAATTTGCTCATTTTTGGACTTTGTTTGTCTTGTTTGGTTGC
GCCCTTGTCTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042362XLOC_042362Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067834-proteinTCONS_00067834-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067834-exon-scaffold_476-1575043694:238694..239424TCONS_00067834-exon-scaffold_476-1575043694:238694..239424Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1575043694:235433..235555TCONS_00067834-exon-scaffold_476-1575043694:235433..235555Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1575043694:233755..234119TCONS_00067834-exon-scaffold_476-1575043694:233755..234119Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1510915933:238694..239424TCONS_00067834-exon-scaffold_476-1510915933:238694..239424Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1510915933:235433..235555TCONS_00067834-exon-scaffold_476-1510915933:235433..235555Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1510915933:233755..234119TCONS_00067834-exon-scaffold_476-1510915933:233755..234119Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1491911889:238694..239424TCONS_00067834-exon-scaffold_476-1491911889:238694..239424Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1491911889:235433..235555TCONS_00067834-exon-scaffold_476-1491911889:235433..235555Clytia hemisphaericaexon
TCONS_00067834-exon-scaffold_476-1491911889:233755..234119TCONS_00067834-exon-scaffold_476-1491911889:233755..234119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:233755..239424 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.338924	0.423124	0	0.100511	0.212688	0.23385	0.478209	0.305429	0.126882	0.378852	0	0.281451	7.32487	9.6411	5.09722	3.86977	4.29627	4.65697	14.5515	13.6332	7.15068	6.88531	9.28344	6.87056	14.7264	9.70698	49.4177	70.8099	34.2413	27.7904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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