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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067836 ID=TCONS_00067836|Name=TCONS_00067836|organism=Clytia hemisphaerica|type=transcript|length=2496bpRun BLAST on NCBI protein sequence of TCONS_00067836-protein >TCONS_00067836-protein ID=TCONS_00067836-protein|Name=TCONS_00067836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp LFLVTKYIIEKMLVRRFVNQKVFLEVLRPASSFNLSCHRKYSVKKTPSAIRun BLAST on NCBI transcript from alignment at scaffold_476:246006..259218- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067836 ID=TCONS_00067836|Name=TCONS_00067836|organism=Clytia hemisphaerica|type=transcript|length=13213bp|location=Sequence derived from alignment at scaffold_476:246006..259218- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_476:246006..259218- >TCONS_00067836 ID=TCONS_00067836|Name=TCONS_00067836|organism=Clytia hemisphaerica|type=CDS|length=17082bp|location=Sequence derived from alignment at scaffold_476:246006..259218- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067836 vs. Swiss-Prot (Human)
Match: NDUF7 (Protein arginine methyltransferase NDUFAF7, mitochondrial OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 5.455e-101 Identity = 177/390 (45.38%), Postives = 233/390 (59.74%), Query Frame = 3
Query: 156 LMDHLKQRIKATGPITVASYMKEALTNPVWGYYMKTDVFGKEGDFTTSPEISQIFGELIAIWLVLQWSEMNKPTPFQLVELGPGRGTLMSDIVRVFQQFKGNIDD-KFSIHFVEVSEKMKQMQRHNL---KVS-EKN-------DMIENTNIKVNWHSKIQDVPKGLSLYIAHEFFDALPVHLFQKKEGHWREVLVNLSSS-QQVLEFVTAPGASPLAMSMNLPEDVDQCEIXASPLAMSMNLPEDVDQCEICPEAGVVMACISQNIAEHGGCSLIVDYGVQRSDRFSLRGFKNHELVSDVLEAPGHCDLTTNVDFGFLKQNSHSDVTCHGPVTQKTFLMQMGIRERLQALLRNANERQA-QNLLSSYDYLTSNQKMGEKFKVMAVTKHK 1283
++ HL +IK+TGPITVA YMKE LTNP GYY+ D+ G++GDF TSPEISQIFGEL+ IW + +W K T FQLVELGPGRGTL+ DI+RVF Q + + S+H VEVS+K+ ++Q L KV E+N + + I ++W+ + DVPKG S Y+AHEFFD LPVH FQK WREV V++ L FV AP A+P E Q + E D E+CP+AGV++ +SQ IA GG +L+ DYG + + RGF +H+L DVL APG DLT +VDF +L++ + V GP+ Q TFL MGI RL+ LL +NE Q LL YD L + +KMGE+F A+ H+
Sbjct: 43 MLRHLMYKIKSTGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLAHEFFDVLPVHKFQKTPQGWREVFVDIDPQVSDKLRFVLAPSATP-------AEAFIQHD-------------ETRDHVEVCPDAGVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKL-HDVLIAPGTADLTADVDFSYLRRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGERFNFFALLPHQ 411 The following BLAST results are available for this feature:
BLAST of TCONS_00067836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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