|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067854 ID=TCONS_00067854|Name=TCONS_00067854|organism=Clytia hemisphaerica|type=transcript|length=1351bp
TATCGATCGATCCCTAGGACTATCGTACTGTGGATGCGACATAGGGTGTA
TAAGTAGGTCACGAAATGACAGGAAAAAGGATATAGAGAGATTGAAACGC
TTGCAAGTAAAACATCTAAGTATTTTCCACACTTTTCGCATCTTTGTGAA
TCTTGCTGTTTCTTTTACAACAGTCTATTTTATTCTCAAAGTCAAATATT
CTGTTCAGCATAACTAATGTTGAACACAACACCACTGTTATGATTCCGAT
CCATGAATAAGGATTTGGAGCCTCGTGTGCAAGCCACAAATCATAACAAT
AAGCAAACAGAATTTCTGTTGATGCCACGAAAGCCACAATACTAACGTGT
TCATGTTTCAAAGCAATTACACTAAACAAATTACCAAGAAATCCAGATAT
TCCAATAACGATTAATATCAACCAACTTGATAGTGGCAATTCAGTTGTGA
CCAAATAGTCTTGCTGAATTAACATCGTCAATGGTGACAGAACCAACATA
GCAACACTTGGATACAGGACAAACAATTTATAGTCCATAGTTTTCATCAT
TAGAATTCTACTTACAGTCTTGAATGTACACCGAAGTAAAACACCAGCAA
AAGCAGACGCTGCACCAAGTAAATATCGCTCCACAGAGCTAGTATAGCCT
TTGATATAATTGGTTTTGACAGGAAAGATGATATTCGGAACCATAACAAT
AACGATACCAACAAATGTAAGAAGGCCCAAAATACCATTTAACATGCTAC
ACTTTTCTTTAAGGAATACgaatccaaataaaaatgcaACAGCAGGGGTA
GTCGATTCAATGATACATACGGTGCCTACGCTAACACCTTTTAATGCAGT
AAAACAAAATATAGAGGCTGTAGCTTTTATACATCCAGACAGAAATAGTG
GTAATAAATcgtttgggttttcaaaagggAATGTTTTAGTAAAGGTCATC
ACTACACCAATCATTATCAGTTGCACAAATCCACGAATGAAGGTTAATTG
TGGACCAGACAACGGGACTTCAGGATTCTTTGTAAAAACATACCTTGCAC
AGCAAGAAaggaaattaaagaaaaaagctgtcaaaaatgctgacgtaaTA
CCAACTACGCGATCAAATTTTTCGGGTTTCGAAGtttcaccatttttttg
atttgtatttttcatgttgatggtcgccattttggttatttttttttctt
tcaattttttactctaaaaatataaaaagtaggttttaaaaaagcaaagt
gctaatacaaagaaaaaagtaGTTTCTTCCAGGGTGCACTAGTCTGAATC
GCTGCTTCAAGTTTGTCTTTATATTCTCCAGCTAAAACTCCTCCAATCTC
C Run BLAST on NCBI protein sequence of TCONS_00067854-protein >TCONS_00067854-protein ID=TCONS_00067854-protein|Name=TCONS_00067854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MATINMKNTNQKNGETSKPEKFDRVVGITSAFLTAFFFNFLSCCARYVFT
KNPEVPLSGPQLTFIRGFVQLIMIGVVMTFTKTFPFENPNDLLPLFLSGC
IKATASIFCFTALKGVSVGTVCIIESTTPAVAFLFGFVFLKEKCSMLNGI
LGLLTFVGIVIVMVPNIIFPVKTNYIKGYTSSVERYLLGAASAFAGVLLR
CTFKTVSRILMMKTMDYKLFVLYPSVAMLVLSPLTMLIQQDYLVTTELPL
SSWLILIVIGISGFLGNLFSVIALKHEHVSIVAFVASTEILFAYCYDLWL
AHEAPNPYSWIGIITVVLCSTLVMLNRIFDFENKIDCCKRNSKIHKDAKS
VENT Run BLAST on NCBI transcript from alignment at scaffold_476:306812..308162 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067854 ID=TCONS_00067854|Name=TCONS_00067854|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_476:306812..308162 (Clytia hemisphaerica)
GGAGATTGGAGGAGTTTTAGCTGGAGAATATAAAGACAAACTTGAAGCAG
CGATTCAGACTAGTGCACCCTGGAAGAAACtacttttttctttgtattag
cactttgcttttttaaaacctactttttatatttttagagtaaaaaattg
aaagaaaaaaaaataaccaaaatggcgaccatcaacatgaaaaatacaaa
tcaaaaaaatggtgaaaCTTCGAAACCCGAAAAATTTGATCGCGTAGTTG
GTAttacgtcagcatttttgacagcttttttctttaatttcctTTCTTGC
TGTGCAAGGTATGTTTTTACAAAGAATCCTGAAGTCCCGTTGTCTGGTCC
ACAATTAACCTTCATTCGTGGATTTGTGCAACTGATAATGATTGGTGTAG
TGATGACCTTTACTAAAACATTcccttttgaaaacccaaacgATTTATTA
CCACTATTTCTGTCTGGATGTATAAAAGCTACAGCCTCTATATTTTGTTT
TACTGCATTAAAAGGTGTTAGCGTAGGCACCGTATGTATCATTGAATCGA
CTACCCCTGCTGTtgcatttttatttggattcGTATTCCTTAAAGAAAAG
TGTAGCATGTTAAATGGTATTTTGGGCCTTCTTACATTTGTTGGTATCGT
TATTGTTATGGTTCCGAATATCATCTTTCCTGTCAAAACCAATTATATCA
AAGGCTATACTAGCTCTGTGGAGCGATATTTACTTGGTGCAGCGTCTGCT
TTTGCTGGTGTTTTACTTCGGTGTACATTCAAGACTGTAAGTAGAATTCT
AATGATGAAAACTATGGACTATAAATTGTTTGTCCTGTATCCAAGTGTTG
CTATGTTGGTTCTGTCACCATTGACGATGTTAATTCAGCAAGACTATTTG
GTCACAACTGAATTGCCACTATCAAGTTGGTTGATATTAATCGTTATTGG
AATATCTGGATTTCTTGGTAATTTGTTTAGTGTAATTGCTTTGAAACATG
AACACGTTAGTATTGTGGCTTTCGTGGCATCAACAGAAATTCTGTTTGCT
TATTGTTATGATTTGTGGCTTGCACACGAGGCTCCAAATCCTTATTCATG
GATCGGAATCATAACAGTGGTGTTGTGTTCAACATTAGTTATGCTGAACA
GAATATTTGACTTTGAGAATAAAATAGACTGTTGTAAAAGAAACAGCAAG
ATTCACAAAGATGCGAAAAGTGTGGAAAATACTTAGATGTTTTACTTGCA
AGCGTTTCAATCTCTCTATATCCTTTTTCCTGTCATTTCGTGACCTACTT
ATACACCCTATGTCGCATCCACAGTACGATAGTCCTAGGGATCGATCGAT
A Coding sequence (CDS) from alignment at scaffold_476:306812..308162 >TCONS_00067854 ID=TCONS_00067854|Name=TCONS_00067854|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_476:306812..308162 (Clytia hemisphaerica)
atggcgaccatcaacatgaaaaatacaaatcaaaaaaatggtgaaaCTTC
GAAACCCGAAAAATTTGATCGCGTAGTTGGTAttacgtcagcatttttga
cagcttttttctttaatttcctTTCTTGCTGTGCAAGGTATGTTTTTACA
AAGAATCCTGAAGTCCCGTTGTCTGGTCCACAATTAACCTTCATTCGTGG
ATTTGTGCAACTGATAATGATTGGTGTAGTGATGACCTTTACTAAAACAT
TcccttttgaaaacccaaacgATTTATTACCACTATTTCTGTCTGGATGT
ATAAAAGCTACAGCCTCTATATTTTGTTTTACTGCATTAAAAGGTGTTAG
CGTAGGCACCGTATGTATCATTGAATCGACTACCCCTGCTGTtgcatttt
tatttggattcGTATTCCTTAAAGAAAAGTGTAGCATGTTAAATGGTATT
TTGGGCCTTCTTACATTTGTTGGTATCGTTATTGTTATGGTTCCGAATAT
CATCTTTCCTGTCAAAACCAATTATATCAAAGGCTATACTAGCTCTGTGG
AGCGATATTTACTTGGTGCAGCGTCTGCTTTTGCTGGTGTTTTACTTCGG
TGTACATTCAAGACTGTAAGTAGAATTCTAATGATGAAAACTATGGACTA
TAAATTGTTTGTCCTGTATCCAAGTGTTGCTATGTTGGTTCTGTCACCAT
TGACGATGTTAATTCAGCAAGACTATTTGGTCACAACTGAATTGCCACTA
TCAAGTTGGTTGATATTAATCGTTATTGGAATATCTGGATTTCTTGGTAA
TTTGTTTAGTGTAATTGCTTTGAAACATGAACACGTTAGTATTGTGGCTT
TCGTGGCATCAACAGAAATTCTGTTTGCTTATTGTTATGATTTGTGGCTT
GCACACGAGGCTCCAAATCCTTATTCATGGATCGGAATCATAACAGTGGT
GTTGTGTTCAACATTAGTTATGCTGAACAGAATATTTGACTTTGAGAATA
AAATAGACTGTTGTAAAAGAAACAGCAAGATTCACAAAGATGCGAAAAGT
GTGGAAAATACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067854-exon-scaffold_476-1491911889:306812..308162 | TCONS_00067854-exon-scaffold_476-1491911889:306812..308162 | Clytia hemisphaerica | exon |
| TCONS_00067854-exon-scaffold_476-1510915933:306812..308162 | TCONS_00067854-exon-scaffold_476-1510915933:306812..308162 | Clytia hemisphaerica | exon |
| TCONS_00067854-exon-scaffold_476-1575043694:306812..308162 | TCONS_00067854-exon-scaffold_476-1575043694:306812..308162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:306812..308162 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
|
