TCONS_00067948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067948
Unique NameTCONS_00067948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067948 ID=TCONS_00067948|Name=TCONS_00067948|organism=Clytia hemisphaerica|type=transcript|length=304bp
ATTTTGTAGAatgtttgccattttttgacTGTCATTTGTCAGTTGATTGG
ATTTTGGATCCTTCAATGGTCCAACCTTCGGTTTATGTTTTGAAAAGCGT
TTCGCGtacgaataaaaatattttggattggattttattttcgaaGTAGC
ATTTGTTTCTTGGTTCTTTCTTTCATTGGAGTATGATTTTTGAAGTTTAA
GTTCAATATCCATaagtttttggtgaatctttTGAGTTGATTTCCTTTTC
TTAAGCTTTAGGCGTTTTCGCATCAGCACTCTTCTATCTCTGGGTATAAT
ggtt
Run BLAST on NCBI

protein sequence of TCONS_00067948-protein

>TCONS_00067948-protein ID=TCONS_00067948-protein|Name=TCONS_00067948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
TIIPRDRRVLMRKRLKLKKRKSTQKIHQKLMDIELKLQKSYSNERKNQET
NATSKIKSNPKYFYSYAKRFSKHKPKVGPLKDPKSNQLTNDSQKMANILQ
N
Run BLAST on NCBI

transcript from alignment at scaffold_477:153079..153382

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067948 ID=TCONS_00067948|Name=TCONS_00067948|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_477:153079..153382 (Clytia hemisphaerica)
aaccATTATACCCAGAGATAGAAGAGTGCTGATGCGAAAACGCCTAAAGC
TTAAGAAAAGGAAATCAACTCAaaagattcaccaaaaacttATGGATATT
GAACTTAAACTTCAAAAATCATACTCCAATGAAAGAAAGAACCAAGAAAC
AAATGCTACttcgaaaataaaatccaatccaaaatatttttattcgtaCG
CGAAACGCTTTTCAAAACATAAACCGAAGGTTGGACCATTGAAGGATCCA
AAATCCAATCAACTGACAAATGACAgtcaaaaaatggcaaacatTCTACA
AAAT

Coding sequence (CDS) from alignment at scaffold_477:153079..153382

>TCONS_00067948 ID=TCONS_00067948|Name=TCONS_00067948|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_477:153079..153382 (Clytia hemisphaerica)
accATTATACCCAGAGATAGAAGAGTGCTGATGCGAAAACGCCTAAAGCT
TAAGAAAAGGAAATCAACTCAaaagattcaccaaaaacttATGGATATTG
AACTTAAACTTCAAAAATCATACTCCAATGAAAGAAAGAACCAAGAAACA
AATGCTACttcgaaaataaaatccaatccaaaatatttttattcgtaCGC
GAAACGCTTTTCAAAACATAAACCGAAGGTTGGACCATTGAAGGATCCAA
AATCCAATCAACTGACAAATGACAgtcaaaaaatggcaaacatTCTACAA
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042431XLOC_042431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067948-exon-scaffold_477-1491911889:153079..153382TCONS_00067948-exon-scaffold_477-1491911889:153079..153382Clytia hemisphaericaexon
TCONS_00067948-exon-scaffold_477-1510915933:153079..153382TCONS_00067948-exon-scaffold_477-1510915933:153079..153382Clytia hemisphaericaexon
TCONS_00067948-exon-scaffold_477-1575043694:153079..153382TCONS_00067948-exon-scaffold_477-1575043694:153079..153382Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067948-proteinTCONS_00067948-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:153079..153382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61184	0.415972	2.43648	0.887993	1.10969	0	0.959411	0.449094	0.314422	0.389462	0	1.58022	0.80276	0.773121	0.241554	0.255713	0	0.339121	0	0.41505	0	0	0	0.388944	0	1.14971	0	1.09203	0.414135	0.421938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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