|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067897 ID=TCONS_00067897|Name=TCONS_00067897|organism=Clytia hemisphaerica|type=transcript|length=1329bp
TTACCTTAGCAATCTTTTCTAGTTTCACTGCATGTACGAACTATTGTTTA
TTTATTAAGACTGTTAGGTTTAGTGGGTGCAGTTTAATCTCTGTCGTGTC
AAGTTGTTTGAAGGCTTTGAgtaaagaaaaaggtttttttgcgTGTTACT
TCAAAAATATAAATCGAAGataccAGAAAAAGTATCAAGATTCCAATAAT
TGGAGGTTGTGCATATCACCAACATGTTACACCTACTCCGTCGAAGAAGT
TCAATCTTAATTTGCATTTGTCTTTTTGGTGCGCTCGCCTTCCGTAGTTT
GTTTGCGTCAATCAAAATACAAAGCTCGAAATTATCAGTAACTGAAGATC
CAAACAAGCTTAACTTAAACAACCTTCTTCATCCCAACGGTAAACATGTA
AAACTGAACAGCTTAGAAAATGTCATCAATTCGGACATAAAGAACATGAA
CCTCAAACTCGAACGAATTGGTAAGAGCACTAACAGCCCTAAACTGAAGA
TCTCTGCTAAGACCATCAACAAACTAAATGAGGAAATATCAATTGTTCAA
GGGCAAGAAATCGGCGAGAAAACATCCGAGGAAGAAGATCCTAGATTTAA
GATAGTTCATCCAACGGTAAATACAACTACAGCAACATCTAGGAAACCTA
AAATTGAACCAGTAAAGACACCGGTGAAACCTGTAAGTAAGGCACAAATT
CTAATGGAAGTTGGAAACCTTGTTGGGGACAAAACCTTACATTTCTGTCC
gttatttttcatcaatttcatGCGAAATAATGACCCAAAACTGAATGAAC
CAGAGCTTTCGAGCTATAAAAAAGTCATGTGCAAAATACAAAAAGGAAAG
CAATGCAAAACCGAAAATCTTCAAGGTCCCTTAAAAGTTAATAAGACAAT
TTTAAGTATGGAATGGAttcaaaaaaatgaactttcatttgTTAACAGAG
GTGGGTGGTACATGCCCACAGGATGCAATAGTGGTACTCGTACGGCTATT
ATAATTCCGTTTCGTAACCGCGAACAACATCTCCCCGTAATGTTACGTCA
GTTACACGCCGTGTTACGCCGTCAACAAATTCATTACCGTATTTTTGTGA
TCGAGCAATCGGACGAACATCCATTCAACCGTGGTAAAATACGTAATATT
GGTTTCAAAGAAGCATTACGTTATTTCCCGTATACATGCTTTGTTTTCCA
TGACGTAGATCTTGTTCCAGAGAATGATCGTATCTTTTACGACTGTCGTC
AATCTCCTGCGCATATGTCGGTAGCGGTGGACACGTTAGGTTATATGCCT
CTTCAATATGAACATTTTGGAGGAGTTGT Run BLAST on NCBI transcript from alignment at scaffold_477:233731..239252- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067897 ID=TCONS_00067897|Name=TCONS_00067897|organism=Clytia hemisphaerica|type=transcript|length=5522bp|location=Sequence derived from alignment at scaffold_477:233731..239252- (Clytia hemisphaerica)
TTACCTTAGCAATCTTTTCTAGTTTCACTGCATGTACGAACTATTGTTTA
TTTATTAAGACTGTTAGGTTTAGTGGGTGCAGTTTAATCTCTGTCGTGTC
AAGTTGTTTGAAGGCTTTGAGTAAAGAAAAAGGTTTTTTTGCGTGTTACT
TCAAAAATATAAATCGAAGGTAAGTCTTTTTGCCAGTAAAACAGCGAACA
TTGGATATTTAATATTATTCGATTTTAACCATGGTGTTCTAACTTGCATC
TATGTTTTCGAGACCACGGTATATTGATGTTGGCCATGAATTTAGAACGC
CATGATTTTAATACTATAAAGAAAGGCGTACATATTTGTAGGCACTTTTA
GCGTCGGTAAGTAATTCAAGTAATACTGTTATTACACCGATTCTTATGGT
TGAATCTCTGACTCCGGAAAACTGGGGTCCTAAGAATAGTACACGTTGTT
TTTTGTTTTTAAGAAACACACTTTTAAGAAAGCGCCTAGAAAATGCCTAA
AATGCTCAGAATACCTAACAACTAAGAAACATCTAAGAAACATGCTGAGG
CTGAGAATGAGAAAATAATATTTTTTCATTCGTATTTTTTTAAGAACCTC
CCTGATTCATCCTTCCATGAGGCTGAGTATGTGAAAAAGTTTAGAAACAT
GTAAGAAACATTTAAGTGCCGAAATGGCCGAAAAATTGATTTTATTATTT
GAGAATAAAAGTAATGTTTTAAGTTCTTTGGGTGGGTTTACATCTGTAAG
AGAGAATCGATTAACACTCCCTTTGTCGATAACAATTCAGAACATAAACG
AAACAAAAGCTCAAAATCACTTTTACGAATTCTTTTATAAACATAATCGA
TCTTCCCCTTGTTATTACCATTGTTACAAGAGGTAGGTTGGGGTACCTCT
TAAGATGTAGGACGTAACGAGGAGAATATCCATTAAGACTTGAAAAGAAA
TCGTTTAAACGATTTTTCCAATTCATTTCAAATGCGTAAAAAATTGGAAA
ATGATTTCGATGATGATGATAACTACGCAAATGATATTTTTAAACAAGCT
TTACTATACAGCGTGAACTTGTATGGTGTAGATATGTATCAACGGTTGAA
TATAGAAAAACCATATTTGCATTCCGTGATAAAATTTTAACCAATGAGAA
AGCTTAGGGAAAATCAATTAAGACTCAAAAGAGGAATCGTGATGGAATCA
AAAGAAATCGTGCCATTACTATTGTACTTCTTAATCGATTCTCTCCTAGA
TGTGAAGGGGGGGGGGGGGGGGCGTACGAGGTTTGCGATTTCCGAAATAT
CAAATAAATTTGCCAACACTTCTGAAATTCCATAAAAAGATAGTTGCAAT
TCCGATACTGATTTTTTGGGGTATTTTTCTTCGTTTTGACTAAGTTTTCA
TCAAATTTGATTTTTCATATATGAATTCCGAAAAAGGGGGATAAAAACTT
TATAATACCGAAGAAATTTCGAAGCAAAAATTCATGGATTTCCGATACCA
AAACAATTTCAGAATTCCGAAATACCGAAGGAATTTTTCCCGACTTCCGA
AATTCCGAAGAAAAAAGGGTCGATTTCCGCAATTCCGAAATACCGTACGT
CACCCACTGTAAGCCCACCCTTTAGCACTTTTAACAAAGAATTGCCATTA
TGAATTGATTTTTAATCAAATCCCTAAAGAGTAATCAAGAATTTAATTGC
AGAAATGATGCTTTGAACTTTAAAAAGACGTTAATAGTATTTGGCATCAC
CTTCTTTTATAAAAAGTGCTAAGTTTTAATGGTTAATTAACCTTTTGTTT
CGAAAATTCTTAATGAATCCATCAAAAGCTATGGTTGTTTTTCTATGAAA
AATTGGAATGAAAAATTGGTCAGAAAGCACTATTTTCAAGATTTTGAGAC
AGAAAATTTTCCGAAAATTTATTTTTAGTTGGGTAAAAGATACACCATCT
ACTGCAACAAAATGCTCAAAATGTTTTTTTCTTCGCAGAAACTAAGCTCT
TCAAAGTTTAAATACTCTTCTTCGTAAAAGTCTTCATTTTCTTCTCCATC
AAATTTTTTCATTGTGAATCAGAAAATGTATACAACATGTCACAGTTTTG
TGTGCTACATCAAGAAGAAATTTATATATTTTGTTTGGCAAATATTAAAA
GTTCACTATGGTCAGAGCCCTTAAGGCTCGATAGGCCGATTTCTTAAAAG
AAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAGAAACGTGTAG
TCAGTATACATGATAGTCAGTATATATCGTCATGATAAAACATAACACAT
TTTCCTCAACGATTGATTTTATTAAAAACAGATCCCGGGGGAACGGGGCA
AAAAGAGCTACGGGGATCCTTTTTTCACCTCCACGAGTCCCAGACAGGAT
TGCAGAAACATCAAAGTTGAAAAACCCTATACATGGTATTTTTTTCGCAT
TTTGGGAAGATTTTCAAAAAAACCGAGTCCCACGGTCCATTTTTTGAACC
TCAGTGGTGCATCCCTGTCTGGCAGTAAGGGTAGTATCCCCGGGAATAAA
TTACTACTTAAACCTTAAAACCAAACCTTCGAGCCAGAACCAAATCTTCA
TTATTCACACCTCGAAAGTACAATGCAATAGAGGATCTTTCCTTTTTACC
CGAGGGGCAAATCACTAAAATAAATCTCCTACACAATTTTATAAATCAAA
AATAAATCAAAAATAAATCATAAATAAAAAATAAATCAAAAATAAATCAT
AAATAAAAAATAAATCAGAAATAAATCATAAATAAAAAATAAATCAGAAA
TAAATCAATAAATGAAAAATAAATCAGAAATAAATAAAAATAAATAAAAA
ATCTTTCGAAAAAAAAGTGACTTTTCAACTTTTTTTATTTTTTTGACAAA
GATTTTGAGTATCAGTTCGTTATAATTTGAAAAATTTTTTCCATAACATT
ACTCCTATTCATAAATTAGAAATAAATCAAAAATAATTAAAAAATAAATC
AAAAATAAATCATAAATCAAAAATAAATCAAAAATAAATCATAAATAAAT
CATAAATCAAAAATAAATCAGAAATAAATCAGAAATAAATCATAAATAAA
AAATAAATCAAAAATAAATCATAAATCAAAAATAAATCAGAAATAAATCA
GAAATAAATCATAAATAAAAAATAAATCAAAAATAAATCATAAATCAAAA
ATAAATCAAAAATAAATCAAAAATAAATCAAAAATAAATCAAAAATAAAT
CATAAATCAAAAATAAATCATAAATCAAAAATAAATCATAAATCTCGTAC
ACCATTTTCGAGTGATTTGCCCCTCGTTTTTATCCTCTAACATCAGCAGT
TTGGGCCAAAAATGCAATTATCCAAATAGTTTTCCATACATATTCCAACA
ATATTTTGCTTAANATCCTCTAACATCAGCAGTTTGGGCCAAAAATGCAA
TTATCCAAATGGTTTTCCATACATATTCCAATAATATTTTGCTTAGTACG
AGGCGAGGGGGGAGGAAAAAATACCGATTTTGGAAAATTGCTTCCCCACG
TTGTTCTAATTATAGAGGACCCACCTCCTGTGGGGTTTTGACTCGAAGAA
AACTAAAATTGAGGTGTTTTTTGGTTGACATTTTTAGGATTCTTAACTTT
TCCATCCCTTAAATCTTATAAAGTTTATCCTAACAAGAAACGTTTACAAT
ATTTCTAGCCAAGATTTAGCTTTTGCTTTTTCTGTGACTTCTGTGTTTTT
ATCTCACGAAAATGTGTTTTTTCGTTGCAATTTTCTTCCCTTAATTTATT
CCATCTTGATTCTTAAAATTCTATGCAAAAGAATTTTGATTTGTGCATCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTG
GAAAACGCATACTTTGTCCCATAGAGTGGTTCACCCCAGGGTAATACACT
CGCTCAGCCATATGTCAGTATCTCGCAAGCTGTAGGGTAATATAAACAAC
AAATCTAACGAGACGACCTCCTAAAACACTAAATAAAGGACTGTTCATTC
CTTATCAAGCGAGGTCAGTCATAATAAAATCAATAAGACATTTTTTCCTT
TTTTTTTTTTAGATACCAGAAAAAGTATCAAGATTCCAATAATTGGAGGT
TGTGCATATCACCAACATGTTACACCTACTCCGTCGAAGAAGTTCAATCT
TAATTTGCATTTGTCTTTTTGGTGCGCTCGCCTTCCGTAGTTTGTTTGCG
TCAATCAAAATACAAAGCTCGAAATTATCAGTAACTGAAGATCCAAACAA
GCTTAACTTAAACAACCTTCTTCATCCCAACGGTAAACATGTAAAACTGA
ACAGCTTAGAAAATGTCATCAATTCGGACATAAAGAACATGAACCTCAAA
CTCGAACGAATTGGTAAGAGCACTAACAGCCCTAAACTGAAGATCTCTGC
TAAGACCATCAACAAACTAAATGAGGAAATATCAATTGTTCAAGGGCAAG
AAATCGGCGAGAAAACATCCGAGGAAGAAGATCCTAGATTTAAGATAGTT
CATCCAACGGTAAATACAACTACAGCAACATCTAGGAAACCTAAAATTGA
ACCAGTAAAGACACCGGTGAAACCTGTAAGTAAGGCACAAATTCTAATGG
AAGTTGGAAACCTTGTTGGGGACAAAACCTTACATTTCTGTCCGTTATTT
TTCATCAATTTCATGCGAAATAATGACCCAAAACTGAATGAACCAGAGCT
TTCGAGCTATAAAAAAGTCATGTGCAAAATACAAAAAGGAAAGCAATGCA
AAACCGAAAATCTTCAAGGTCCCTTAAAAGTTAATAAGACAATTTTAAGT
ATGGAATGGATTCAAAAAAATGAACTTTCATTTGTTAACAGAGGTGGGTG
GTACATGCCCACAGGATGCAATAGTGGTACTCGTACGGCTATTATAATTC
CGTTTCGTAACCGCGAACAACATCTCCCCGTAATGTTACGTCAGTTACAC
GCCGTGTTACGCCGTCAACAAATTCATTACCGTATTTTTGTGATCGAGCA
ATCGGACGAACATCCATTCAACCGTGGTAAAATACGTAATATTGGTTTCA
AAGAAGCATTACGTTATTTCCCGTATACATGCTTTGTTTTCCATGACGTA
GATCTTGTTCCAGAGAATGATCGTATCTTTTACGACTGTCGTCAATCTCC
TGCGCATATGTCGGTAGCGGTGGACACGTTAGGTTATATGCCTCTTCAAT
ATGAACATTTTGGAGGAGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067897-exon-scaffold_477-1575043694:239084..239252 | TCONS_00067897-exon-scaffold_477-1575043694:239084..239252 | Clytia hemisphaerica | exon |
| TCONS_00067897-exon-scaffold_477-1575043694:233731..234890 | TCONS_00067897-exon-scaffold_477-1575043694:233731..234890 | Clytia hemisphaerica | exon |
| TCONS_00067897-exon-scaffold_477-1510915933:239084..239252 | TCONS_00067897-exon-scaffold_477-1510915933:239084..239252 | Clytia hemisphaerica | exon |
| TCONS_00067897-exon-scaffold_477-1510915933:233731..234890 | TCONS_00067897-exon-scaffold_477-1510915933:233731..234890 | Clytia hemisphaerica | exon |
| TCONS_00067897-exon-scaffold_477-1491911889:239084..239252 | TCONS_00067897-exon-scaffold_477-1491911889:239084..239252 | Clytia hemisphaerica | exon |
| TCONS_00067897-exon-scaffold_477-1491911889:233731..234890 | TCONS_00067897-exon-scaffold_477-1491911889:233731..234890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:233731..239252 - |
Blast
BLAST of TCONS_00067897 vs. Swiss-Prot (Human)
Match: B4GT1 (Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5) HSP 1 Score: 141.354 bits (355), Expect = 4.358e-37 Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 2
Query: 854 CKTEN--LQGPLKVNKTI-LSMEWIQKNELSFVNRGGWYMPTGCNSGTRTAIIIPFRNREQHLPVMLRQLHAVLRRQQIHYRIFVIEQSDEHPFNRGKIRNIGFKEALRYFPYTCFVFHDVDLVPENDRIFYDCRQSPAHMSVAVDTLGYMPLQYEHFGGV 1327
C E+ L GP+ + + + +E + K + V GG Y P C S + AIIIPFRNR++HL L LH VL+RQQ+ Y I+VI Q+ + FNR K+ N+GF+EAL+ + YTCFVF DVDL+P ND Y C P H+SVA+D G+ ++FGGV
Sbjct: 130 CPEESPLLVGPMLIEFNMPVDLELVAKQNPN-VKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGV 289
The following BLAST results are available for this feature:
|
