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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067902 ID=TCONS_00067902|Name=TCONS_00067902|organism=Clytia hemisphaerica|type=transcript|length=1021bp
gaAACTTTTAAACTTAACATAATATGATTTGAAGAAGAGATCACTGTTTA
CTTTTGGATAGGGGCAAAACAGACAGGCACGAAATTCCACCATGAAAATG
CCATCAAACAGTGACTACAAAATCTCACCATTGCATCTCTCAGAAAGCTT
GCAAACAGCTTTGGAGGCGATTCAACTTGCACAACAAGATGCTAATACAC
TTGCAGGTTTCAACAACAGTCGCCAACAAAGGCGCCGTGCCAGTCTACCA
GCTGAGCCGCTCCTCGGTGCACTCAAACGCACCCTGAGCCACAAGCGATT
CCCACATCTAAATTCTACTAAGAGTATACCGTTTGGGTTTTCACCAAGTT
CTAAACAGAGCTCAAACTTGCCACACCTTCACTGGAGCCGTTCGCATTGT
GTGCTACCCCATTTACCAGGGACTTCAAAGCATCGCTCAGCACGTCGAGG
AAGTTTACCAGCCGACTTTAAATTCATGAATGAAGACTTTACTATTAAGG
AAGGAAGACTGAACGAGGGTCGAAAACGAAGAGGTAGCTACCCCTTAACC
GAAGAAATGATGAAACAACGAGACCATCTTCATCGCTGCAAAGCTATCCA
TAAAGCTAATATTACACTTCATGATCTTATAAAAGAATGGAAAAACGTCC
ATCCTACAGCTGTTAAACGTGTGAAATCGGAACCCTTCAATCCTAATACT
AAAGATAAAGATTACGACGAAACGAAATTAGCGCGTACCATCTCCATGAC
AGCGGATTTCATAAACAAAGAAATTGctccttcaaaaaatcttatacaCA
TTCATTTCATCGACTCAAAGACTGTAACACCTTTTTCAGGACACGCTATC
GCCGCTAAAtagtaaaaacaccaaaacaaaaaaaataggaaaaattaacg
aaaatcGACCCCATAAAAAACTGGAAATTTCacaaatttgtaatttttgt
aaCTGTAAGCCATTAAGGtcttattttgtcatttttacacaaagatattt
ctaaaacacgaaaaatataac Run BLAST on NCBI protein sequence of TCONS_00067902-protein >TCONS_00067902-protein ID=TCONS_00067902-protein|Name=TCONS_00067902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MKMPSNSDYKISPLHLSESLQTALEAIQLAQQDANTLAGFNNSRQQRRRA
SLPAEPLLGALKRTLSHKRFPHLNSTKSIPFGFSPSSKQSSNLPHLHWSR
SHCVLPHLPGTSKHRSARRGSLPADFKFMNEDFTIKEGRLNEGRKRRGSY
PLTEEMMKQRDHLHRCKAIHKANITLHDLIKEWKNVHPTAVKRVKSEPFN
PNTKDKDYDETKLARTISMTADFINKEIAPSKNLIHIHFIDSKTVTPFSG
HAIAAK Run BLAST on NCBI transcript from alignment at scaffold_477:296034..300222- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067902 ID=TCONS_00067902|Name=TCONS_00067902|organism=Clytia hemisphaerica|type=transcript|length=4189bp|location=Sequence derived from alignment at scaffold_477:296034..300222- (Clytia hemisphaerica)
GAAACTTTTAAACTTAACATAATATGATTTGAAGAAGAGATCACTGTTTA
CTTTTGGATAGGGGCAAAACAGACAGGCACGAAATTCCACCATGAAAATG
CCATCAAACAGTGACTACAAAATCTCACCATTGCATCTCTCAGAAAGGTA
TGTTGGCTCATTTTCCACCACATTTTTTCCACCATCCCTCAGCACTTGAT
TCTTTTGAGTTCCTATATAATCATTACATAAGGAAATAACTGATATAACT
TTTTCTCCGATGATATTGAAGAATTTAGTTTGTACTCTTGTTCCAAATAA
ACGAGGGGGGGGGGGGGGAATTGCCTTCTACCTTTTTCACTATATTCTTT
GTCAGGGAGATTCAAGACTGAGGCTTGACTGATCTTGTTTTTTCGTGATT
TAGCGATAAAGATCTTATAAATATTTTTTTAACAAGTTTATTTCAAAGTG
CATTTTCTATGTCATTTTTGGAAATCTGAGGCTAGAATTGTTCTTAAATT
AGTTCTTAGGTTTTGATAGAGCGGCTAAGGTATTGGCTAAGATTGAGCCT
CATGTTTGTTTTAAATTGCTTAAAAAGAGAGTATAGTGGAGTACGCTTTT
AAGATATTCCTTTTCATGATACAAGAAAGAGACGCGCCTATGTAAGAAAT
GGTTGGGGATACGTTAAATTTTGTCCTTTGAAAAATATTCACCTACTTCT
ACGGTAACTTAAATTCAAGTAATCAAATTGTCTATCTTGTTTAAAATCCA
TGAGCCTTTTCTACTATCTCGAATTAGAAAGATCATATCTTTTTTCAATA
TTCTCATAGCTTGCAAACAGCTTTGGAGGCGATTCAACTTGCACAACAAG
ATGCTAATACACTTGCAGGTTTCAACAACAGTCGCCAACAAAGGCGCCGT
GCCAGTCTACCAGCTGAGCCGCTCCTCGGTGCACTCAAACGCACCCTGAG
CCACAAGCGATTCCCACATCTAAATTCTACTAAGAGTATACCGTTTGGGT
TTTCACCAAGTTCTAAACAGAGCTCAAACTTGCCACACCTTCACTGGAGC
CGTTCGCATTGTGTGCTACCCCATTTACCAGGGACTTCAAAGCATCGCTC
AGCACGTCGAGGAAGTTTACCAGCCGACTTTAAATTCATGAATGAAGACT
TTACTATTAAGGAAGGAAGGTAACAACTAAAACGGATTGGGTTCTATATC
CATATTTTATTTTTTTTTCTATTTGGTTGAGTTGCAGGAGGCTTCGAGGC
CCATTTTTACATCTATAAATGCTTTCAATGAGCACCCCGTCAGCACCTTG
GACTGACTAGCCAACCGTTATTTTCTAAAGCGGATTTTTCTGCGACTCTA
TTTTGGTAACAAAAACTACTGAACGATAGATTAGAGCATTTTTCATGCCG
ATAATAGTTTACCTTGGTATTTAAGCCAGCTACAACAGTGTTTTTGATTT
TTAAAACACGCATAGAGTACAGTGGAGTCCCTTCAACTCGAACCTCTATA
ATTCGAATGTCTCCTTAACTCGAACAAGTTTTACAAATTCCTTTAACTTG
AATAAATTTGTGTTTCCCGTGCGTGTATGGGAAAATTCTCCAAGAAATTC
TAATCTACCACCGCCACAGTAAACTTTATCTGGCAATTCTCATTGTCATA
GGCTGTATACAGTGTTGCAACTAGCTCCGGGTAATCTAGACGAAAATGTG
TCTATGAGGATTTTAATTTTATGAAATCTCTGATCTCAAGGCTTATTATT
AGGACTTTAATCTATATTAGAAAATTCAAATGGGACGGACTTTCGTTTAA
AGACGGAAAAGTATAAGCGGTTTAGTAGCCCGACCTTCGGATTATTTTTG
CCTAAGTGCCAACAACATGTGCATATGAAGACGAATATCTTACATCAGTT
TCAACGCACCGTTGGTTGCCCTTTTAGACTTTGTCAGGGAAACCTAAAAA
AAGCTATTTTAATGGCTTAAATTTTGTGTGTCTTTCATTTATTCAAATAT
AAATTTTTAAATCCATTAAGACACCTACTCAAAATGAACAATTCCATTTA
ATATCCATACAGGGGGGGGGGGGGGAAAAAAAATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAATTTTGCTATTTTCCAGGGGGTATCCACGCATTTCC
AAGAATGGTTGACTTGAAAAGGTTCGTCCAACCCCCTGTATAGAAATTTA
ATCGAATGGTCCAATGTCACCTAGAAAATATTCGAAATAAAAAATTTCAT
GTACGTCTCATTCTCGAATTTCGAACAGGCACGGTACCATCAATAAGCAT
TTTAATTCTCTTTCAGACTGAACGAGGGTCGAAAACGAAGAGGTAGCTAC
CCCTTAACCGAAGAAATGATGAAACAACGAGACCATCTTCATCGCTGCAA
AGCTATCCATAAAGCTAATATTACACTTCATGATCTTATAAAAGAATGGA
AAAACGTCCATCCTACAGCTGTTAAACGTGTGAAATCGGAACCCTTCAAT
CCTAATACTAAAGATAAAGGTAATTATAATTACAGTTGATGCTTTCTAAT
TCGACGTTTTACTATTCGATAGGCTCCCTTATTCGATGAAATCAAGAAAC
AACTCATAAGAAACTCTCATAAACGACGCTCCCTTATTCGATAAGCAAAA
TGTGTTCGATGAAAATCCAATTCCCCTTGAAGATCGAATTAGAGAGCGTC
AAAGATAATTATAAGCTTCGAATCTCGCTGAAATATACATGGTGTGAATA
AGGTCAACAATTCTCTCTAATTCGAAATCTCTATTTTTCGAATTTTTTCA
TAATTCGAAGAAAGAAATTTGTCCCCTCAGTAATGGGCTTTTCCAGAAAT
AGTCCGTACCCCCCTGTTGAGGTTATCGGATATCCAGGGGGTTAACGATT
TTTGTTCGAAAATGGATATCCAGGGGGTTAAATATCTACAAGTGAGCGGA
TATCCAGGGGGTAAAGTGTCTTTTCAAATAAAAAATACGATATTCAGGGG
TAAGCATCTTTATAAGAGAGGATATCCAGAGGGTTGAGCATATTTTTAAG
AGTGGGTATCCAGAGGGTCTTTACTAATAAAGTAGGATATCCAGGGGGTT
CGATACTTCGAAAAATCAATATCCTCAATAGTGGAGGTGAATTTTTTTCT
GGAAAAGCCCAATCTCTAATTTGAGGTGTGGTCCTGGTCCTAATNGCAAC
AGTGGAGGTGAATTTTTTTTCTGGAAAAGCCCAATCCGAATATTTCTCTA
ATTTGAGGTGTGGTCCTGGTCCTAATTAGGAGATCGAAATGGAGAGAGTC
AACTTCATCACCCCGTACACCCCGTACACTTGAGAAGGCAGACGGCCTTC
TTTAAAATTACAGACTCTCCCTCCACTTAGAAAATTGGAACTTTCAAAAC
TTTCGAAAATAAGAGTATGACTATGAGGTACAACTATGAACGCGATGAGC
AAAACGAAACATGTTTTACGTGACCTTTAATAAGACGAAAACCTTTCATT
AAACCCTTTAAAGTTTTACCAAGTTTGGTACTCGGCTGGATTCCGTAATT
CAAGGGATTTTGTTTTGTTAAGGCTGGCGAATGAAAGATTAACACCGACG
AATTCGTAGCGAGCCCAGTGTATTGATTAGCGGGAATATTTACTTGAGGC
GGTGAACCGAAATCTTAGAATTGTATTTTTTCGTGCCTTGGACCGGTGAA
ATTCGCCGTTCAACGGGCCTGAGTTAGATCCCTGGTCATTATATTTAGTT
TAATAATTCTCATGCATTTTCAATTTAGATTACGACGAAACGAAATTAGC
GCGTACCATCTCCATGACAGCGGATTTCATAAACAAAGAAATTGCTCCTT
CAAAAAATCTTATACACATTCATTTCATCGACTCAAAGACTGTAACACCT
TTTTCAGGACACGCTATCGCCGCTAAATAGTAAAAACACCAAAACAAAAA
AAATAGGAAAAATTAACGAAAATCGACCCCATAAAAAACTGGAAATTTCA
CAAATTTGTAATTTTTGTAACTGTAAGCCATTAAGGTCTTATTTTGTCAT
TTTTACACAAAGATATTTCTAAAACACGAAAAATATAAC Coding sequence (CDS) from alignment at scaffold_477:296034..300222- >TCONS_00067902 ID=TCONS_00067902|Name=TCONS_00067902|organism=Clytia hemisphaerica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_477:296034..300222- (Clytia hemisphaerica)
ATTACGACGAAACGAAATTAGCGCGTACCATCTCCATGACAGCGGATTTC
ATAAACAAAGAAATTGCTCCTTCAAAAAATCTTATACACATTCATTTCAT
CGACTCAAAGACTGTAACACCTTTTTCAGGACACGCTATCGCCGCTAAAT
AGACTGAACGAGGGTCGAAAACGAAGAGGTAGCTACCCCTTAACCGAAGA
AATGATGAAACAACGAGACCATCTTCATCGCTGCAAAGCTATCCATAAAG
CTAATATTACACTTCATGATCTTATAAAAGAATGGAAAAACGTCCATCCT
ACAGCTGTTAAACGTGTGAAATCGGAACCCTTCAATCCTAATACTAAAGA
TAAAGCTTGCAAACAGCTTTGGAGGCGATTCAACTTGCACAACAAGATGC
TAATACACTTGCAGGTTTCAACAACAGTCGCCAACAAAGGCGCCGTGCCA
GTCTACCAGCTGAGCCGCTCCTCGGTGCACTCAAACGCACCCTGAGCCAC
AAGCGATTCCCACATCTAAATTCTACTAAGAGTATACCGTTTGGGTTTTC
ACCAAGTTCTAAACAGAGCTCAAACTTGCCACACCTTCACTGGAGCCGTT
CGCATTGTGTGCTACCCCATTTACCAGGGACTTCAAAGCATCGCTCAGCA
CGTCGAGGAAGTTTACCAGCCGACTTTAAATTCATGAATGAAGACTTTAC
TATTAAGGAAGGAAGATGAAAATGCCATCAAACAGTGACTACAAAATCTC
ACCATTGCATCTCTCAGAAAGATTACGACGAAACGAAATTAGCGCGTACC
ATCTCCATGACAGCGGATTTCATAAACAAAGAAATTGCTCCTTCAAAAAA
TCTTATACACATTCATTTCATCGACTCAAAGACTGTAACACCTTTTTCAG
GACACGCTATCGCCGCTAAATAGACTGAACGAGGGTCGAAAACGAAGAGG
TAGCTACCCCTTAACCGAAGAAATGATGAAACAACGAGACCATCTTCATC
GCTGCAAAGCTATCCATAAAGCTAATATTACACTTCATGATCTTATAAAA
GAATGGAAAAACGTCCATCCTACAGCTGTTAAACGTGTGAAATCGGAACC
CTTCAATCCTAATACTAAAGATAAAGCTTGCAAACAGCTTTGGAGGCGAT
TCAACTTGCACAACAAGATGCTAATACACTTGCAGGTTTCAACAACAGTC
GCCAACAAAGGCGCCGTGCCAGTCTACCAGCTGAGCCGCTCCTCGGTGCA
CTCAAACGCACCCTGAGCCACAAGCGATTCCCACATCTAAATTCTACTAA
GAGTATACCGTTTGGGTTTTCACCAAGTTCTAAACAGAGCTCAAACTTGC
CACACCTTCACTGGAGCCGTTCGCATTGTGTGCTACCCCATTTACCAGGG
ACTTCAAAGCATCGCTCAGCACGTCGAGGAAGTTTACCAGCCGACTTTAA
ATTCATGAATGAAGACTTTACTATTAAGGAAGGAAGATGAAAATGCCATC
AAACAGTGACTACAAAATCTCACCATTGCATCTCTCAGAAAGATTACGAC
GAAACGAAATTAGCGCGTACCATCTCCATGACAGCGGATTTCATAAACAA
AGAAATTGCTCCTTCAAAAAATCTTATACACATTCATTTCATCGACTCAA
AGACTGTAACACCTTTTTCAGGACACGCTATCGCCGCTAAATAGACTGAA
CGAGGGTCGAAAACGAAGAGGTAGCTACCCCTTAACCGAAGAAATGATGA
AACAACGAGACCATCTTCATCGCTGCAAAGCTATCCATAAAGCTAATATT
ACACTTCATGATCTTATAAAAGAATGGAAAAACGTCCATCCTACAGCTGT
TAAACGTGTGAAATCGGAACCCTTCAATCCTAATACTAAAGATAAAGCTT
GCAAACAGCTTTGGAGGCGATTCAACTTGCACAACAAGATGCTAATACAC
TTGCAGGTTTCAACAACAGTCGCCAACAAAGGCGCCGTGCCAGTCTACCA
GCTGAGCCGCTCCTCGGTGCACTCAAACGCACCCTGAGCCACAAGCGATT
CCCACATCTAAATTCTACTAAGAGTATACCGTTTGGGTTTTCACCAAGTT
CTAAACAGAGCTCAAACTTGCCACACCTTCACTGGAGCCGTTCGCATTGT
GTGCTACCCCATTTACCAGGGACTTCAAAGCATCGCTCAGCACGTCGAGG
AAGTTTACCAGCCGACTTTAAATTCATGAATGAAGACTTTACTATTAAGG
AAGGAAGATGAAAATGCCATCAAACAGTGACTACAAAATCTCACCATTGC
ATCTCTCAGAAAGATTACGACGAAACGAAATTAGCGCGTACCATCTCCAT
GACAGCGGATTTCATAAACAAAGAAATTGCTCCTTCAAAAAATCTTATAC
ACATTCATTTCATCGACTCAAAGACTGTAACACCTTTTTCAGGACACGCT
ATCGCCGCTAAATAGACTGAACGAGGGTCGAAAACGAAGAGGTAGCTACC
CCTTAACCGAAGAAATGATGAAACAACGAGACCATCTTCATCGCTGCAAA
GCTATCCATAAAGCTAATATTACACTTCATGATCTTATAAAAGAATGGAA
AAACGTCCATCCTACAGCTGTTAAACGTGTGAAATCGGAACCCTTCAATC
CTAATACTAAAGATAAAGCTTGCAAACAGCTTTGGAGGCGATTCAACTTG
CACAACAAGATGCTAATACACTTGCAGGTTTCAACAACAGTCGCCAACAA
AGGCGCCGTGCCAGTCTACCAGCTGAGCCGCTCCTCGGTGCACTCAAACG
CACCCTGAGCCACAAGCGATTCCCACATCTAAATTCTACTAAGAGTATAC
CGTTTGGGTTTTCACCAAGTTCTAAACAGAGCTCAAACTTGCCACACCTT
CACTGGAGCCGTTCGCATTGTGTGCTACCCCATTTACCAGGGACTTCAAA
GCATCGCTCAGCACGTCGAGGAAGTTTACCAGCCGACTTTAAATTCATGA
ATGAAGACTTTACTATTAAGGAAGGAAGATGAAAATGCCATCAAACAGTG
ACTACAAAATCTCACCATTGCATCTCTCAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067902-exon-scaffold_477-1575043694:300076..300222 | TCONS_00067902-exon-scaffold_477-1575043694:300076..300222 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1575043694:299054..299413 | TCONS_00067902-exon-scaffold_477-1575043694:299054..299413 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1575043694:297604..297806 | TCONS_00067902-exon-scaffold_477-1575043694:297604..297806 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1575043694:296034..296344 | TCONS_00067902-exon-scaffold_477-1575043694:296034..296344 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1510915933:300076..300222 | TCONS_00067902-exon-scaffold_477-1510915933:300076..300222 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1510915933:299054..299413 | TCONS_00067902-exon-scaffold_477-1510915933:299054..299413 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1510915933:297604..297806 | TCONS_00067902-exon-scaffold_477-1510915933:297604..297806 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1510915933:296034..296344 | TCONS_00067902-exon-scaffold_477-1510915933:296034..296344 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1491911889:300076..300222 | TCONS_00067902-exon-scaffold_477-1491911889:300076..300222 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1491911889:299054..299413 | TCONS_00067902-exon-scaffold_477-1491911889:299054..299413 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1491911889:297604..297806 | TCONS_00067902-exon-scaffold_477-1491911889:297604..297806 | Clytia hemisphaerica | exon |
| TCONS_00067902-exon-scaffold_477-1491911889:296034..296344 | TCONS_00067902-exon-scaffold_477-1491911889:296034..296344 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:296034..300222 - |
Blast
The following BLAST results are available for this feature:
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