TCONS_00068063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068063
Unique NameTCONS_00068063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068063 ID=TCONS_00068063|Name=TCONS_00068063|organism=Clytia hemisphaerica|type=transcript|length=536bp
GAACCTTGATGCATTACATAAGGCTAGGGAAGCCTTCATCCAAAGTGAAC
ATTCAGAAAGAATAAGAAGAGCCTTGTCACATAACATCCGTACTTCAAGT
GATGTGAAGTATGTTACTGGTGATCAGGTGTACTACAAACGAAAGGACTC
GAGTGAATGGCATGGACCCGGCATTGTATTGGGACAAGATGGACAACAAG
TACTAATCAAACATAGCAGCTATTATGTTAGAGTACATCCCTGTCGAGTA
AAACTGGTTCATTCTTCATTTCAACAGTCGGAAGACAACAATCGTGATAG
ACTACAAGAAAAGACAACAACTGATCATGTCAACAGTACTACAACTCCCA
TCAACAATAACATGCAAGAAAACCATGCTTTGTTCTCTGATGAATCTGAT
GTCGATTCTGAAAATAACACACAACCACAAATCACGCCAACCAATGATGA
GACAAATAGAATACAATCAAACAGCTCAAACAGCCATACCAGAAAGGTTG
CCCAAAGAAAACCATCACAGATCCCTGTAAAGATAA
Run BLAST on NCBI

transcript from alignment at scaffold_478:266906..267441

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068063 ID=TCONS_00068063|Name=TCONS_00068063|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at scaffold_478:266906..267441 (Clytia hemisphaerica)
TTATCTTTACAGGGATCTGTGATGGTTTTCTTTGGGCAACCTTTCTGGTA
TGGCTGTTTGAGCTGTTTGATTGTATTCTATTTGTCTCATCATTGGTTGG
CGTGATTTGTGGTTGTGTGTTATTTTCAGAATCGACATCAGATTCATCAG
AGAACAAAGCATGGTTTTCTTGCATGTTATTGTTGATGGGAGTTGTAGTA
CTGTTGACATGATCAGTTGTTGTCTTTTCTTGTAGTCTATCACGATTGTT
GTCTTCCGACTGTTGAAATGAAGAATGAACCAGTTTTACTCGACAGGGAT
GTACTCTAACATAATAGCTGCTATGTTTGATTAGTACTTGTTGTCCATCT
TGTCCCAATACAATGCCGGGTCCATGCCATTCACTCGAGTCCTTTCGTTT
GTAGTACACCTGATCACCAGTAACATACTTCACATCACTTGAAGTACGGA
TGTTATGTGACAAGGCTCTTCTTATTCTTTCTGAATGTTCACTTTGGATG
AAGGCTTCCCTAGCCTTATGTAATGCATCAAGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042490XLOC_042490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068063-exon-scaffold_478-1491911889:266906..267441TCONS_00068063-exon-scaffold_478-1491911889:266906..267441Clytia hemisphaericaexon
TCONS_00068063-exon-scaffold_478-1510915933:266906..267441TCONS_00068063-exon-scaffold_478-1510915933:266906..267441Clytia hemisphaericaexon
TCONS_00068063-exon-scaffold_478-1575043694:266906..267441TCONS_00068063-exon-scaffold_478-1575043694:266906..267441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:266906..267441 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57809	0.917999	1.20879	0.667561	0.289452	0	0	1.43006	1.03417	2.00451	0	0.963836	0.0108571	1.79774	1.45336	0.208413	0	0.83995	0	0.751842	1.67909	1.15518	0.450447	0.314848	0.614208	0.455489	3.38366	4.50291	0.697955	1.11285
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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