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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068023 ID=TCONS_00068023|Name=TCONS_00068023|organism=Clytia hemisphaerica|type=transcript|length=2130bpRun BLAST on NCBI protein sequence of TCONS_00068023-protein >TCONS_00068023-protein ID=TCONS_00068023-protein|Name=TCONS_00068023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp AIISNQPEQRSDTSEETVTTSTWIQSISMIIIEGADYVESTLHVPFFHFIRun BLAST on NCBI transcript from alignment at scaffold_478:619984..643350+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068023 ID=TCONS_00068023|Name=TCONS_00068023|organism=Clytia hemisphaerica|type=transcript|length=23367bp|location=Sequence derived from alignment at scaffold_478:619984..643350+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_478:619984..643350+ >TCONS_00068023 ID=TCONS_00068023|Name=TCONS_00068023|organism=Clytia hemisphaerica|type=CDS|length=22500bp|location=Sequence derived from alignment at scaffold_478:619984..643350+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068023 vs. Swiss-Prot (Human)
Match: SPTC1 (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1) HSP 1 Score: 453.751 bits (1166), Expect = 6.587e-152 Identity = 231/464 (49.78%), Postives = 332/464 (71.55%), Query Frame = 3
Query: 108 DYVESTLHVPFFHFILEVLLVLWIVRLLTGKSYNPXXXXXXXXXXXXXXXIADWEPEPLVPADSKIPEYVTKPRLVKGKPSYRININGNDCLNLCTMNFLGFVGNEEVEKAAITTLRNYGVGSCGPRGFYGTVDVHLDLEKKIAEYLGTEEAILYSYGFSTISSAIPAYSKRTDVIFCDKGVNFAIQKGISASRSKVYWFDHNDMEDLERKMKEQQEKDKKNPKKAVVTRRFLVIEGLYINTGDIASLPKIIELKNKYKVRVFIDESYSFGVLGKRGCGVTDHYDIPLDQIDLMAVSLEFSLGSVGGFCAGPSFVIDHQRLSGQGYCFSASLPPLLAVASQTGIELMEKDSSMFKKLENNCKYFRKQIEGIKGFDIQGDEVSPIVHLYLKDTEELSREDIETKLSQYVDKCQEKGVGLTSSRYLNDLELYLPPASIRISLNSKLVEDDMDNSTNIMKEIANEMF 1499
+ V++ P +H ILE +L+LWI+RLL K+Y + + +LT +E+E+LI +W+PEPLVP K + +V G PS++ +NG +C+N + NFLG + N V+ AA+ +L+ YGVG+CGPRGFYGT DVHLDLE ++A+++ TEEAI+YSYGF+TI+SAIPAYSKR D++F D+ FAIQKG+ ASRS + F HNDM DLER +KEQ+ +D+KNP+KA VTRRF+V+EGLY+NTG I LP++++LK KYK R+F++ES SFGVLG+ G GVT+HY I +D IDL++ ++E +L S+GGFC G SFVIDHQRLSGQGYCFSASLPPLLA A+ + +ME++ +F L+ C K ++GI G + G+ +SP HL L+++ +D+ L + VD+C + + LT +RYL E LPP SIR+ + + E++++ + + +KE+A +
Sbjct: 12 EMVQALYEAPAYHLILEGILILWIIRLLFSKTYK-LQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNY-NIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRL-LQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELERAASTIKEVAQAVL 472 The following BLAST results are available for this feature:
BLAST of TCONS_00068023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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