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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068166 ID=TCONS_00068166|Name=TCONS_00068166|organism=Clytia hemisphaerica|type=transcript|length=2824bpRun BLAST on NCBI protein sequence of TCONS_00068166-protein >TCONS_00068166-protein ID=TCONS_00068166-protein|Name=TCONS_00068166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=640bp MDVEHNDSNQNVMMNGDQENHLTNGHSIEDSAFADEPLLNGHHGDATTNLRun BLAST on NCBI transcript from alignment at scaffold_48:234918..243980- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068166 ID=TCONS_00068166|Name=TCONS_00068166|organism=Clytia hemisphaerica|type=transcript|length=9063bp|location=Sequence derived from alignment at scaffold_48:234918..243980- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_48:234918..243980- >TCONS_00068166 ID=TCONS_00068166|Name=TCONS_00068166|organism=Clytia hemisphaerica|type=CDS|length=19230bp|location=Sequence derived from alignment at scaffold_48:234918..243980- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068166 vs. Swiss-Prot (Human)
Match: FKBP8 (Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Homo sapiens GN=FKBP8 PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 4.928e-45 Identity = 98/257 (38.13%), Postives = 147/257 (57.20%), Query Frame = 3
Query: 1218 SRPQQGDLLNIRCEGKLADGTVVDKHSHLQLVLGDADVIQAMDMCVALMEDKETCTLYTDARYAYGLFGRLDYKPAIPKNASITYEIEILSIERGVPLQELSPQECSLRADKKRGRGNDLYSRGDYAGAIDVYKRALKYLEGRT--------DKELLDMKVKCLNNLSAAQLKVKAYIMALQSLDIVLELEPKNVKALFRKGKCLEHLGKENAAFECMKKAAALDPENKLITQDLGRLQKRVAVTQQKEKQIYQRMF 1964
SRP +G ++ + + L +GT V + L LGD DVIQA+D+ V LM+ ET + D++Y YG GR P IP +A++ E+ + + G L+ L+ QE A++KR GN Y R D+ A + Y A+K + + +LL +KVKCLNNL+A+QLK+ Y AL+S +VLE +P N+KALFRKGK L G+ + A ++ A L+P NK I +L +L K+ A + E +Y++M
Sbjct: 115 SRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGR---SPYIPPHAALCLEVTLKTAVDGPDLEMLTGQERVALANRKRECGNAHYQRADFVLAANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVLEHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKHAAQRSTETALYRKML 368 The following BLAST results are available for this feature:
BLAST of TCONS_00068166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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