TCONS_00068450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068450
Unique NameTCONS_00068450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068450 ID=TCONS_00068450|Name=TCONS_00068450|organism=Clytia hemisphaerica|type=transcript|length=356bp
ATTGGATTCGCATCAACCTCGCTTTGGAGTATTGCATCAAAGAAGTGCTC
ATTGGTGTACTTCACAACGTGCACAATGACACTTCTTATACTGGACTTCC
AACTTGTCCAAAACAACTTCATCAAAAATTAGAGTTATGCAAACAAAACA
AGAACCACGAGTTGAACAAAGTGTTGAACAAAGAACAATGGGAGATATTA
TGTCCACAAAATGGATCATCCAACCCAGAAGATTGGGATATCACCTTACT
GATTGCTGTATTAAGGTCAGTGGTTGGATTGCAACCTGCTGGAGGATGGA
AAATCAAATCTCTTCAACCCAACGATCAATCTATTGGAGCTTTCTTGTTT
TTGAtc
Run BLAST on NCBI

protein sequence of TCONS_00068450-protein

>TCONS_00068450-protein ID=TCONS_00068450-protein|Name=TCONS_00068450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
WIRINLALEYCIKEVLIGVLHNVHNDTSYTGLPTCPKQLHQKLELCKQNK
NHELNKVLNKEQWEILCPQNGSSNPEDWDITLLIAVLRSVVGLQPAGGWK
IKSLQPNDQSIGAFLFLI
Run BLAST on NCBI

transcript from alignment at scaffold_485:74814..75169+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068450 ID=TCONS_00068450|Name=TCONS_00068450|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_485:74814..75169+ (Clytia hemisphaerica)
ATTGGATTCGCATCAACCTCGCTTTGGAGTATTGCATCAAAGAAGTGCTC
ATTGGTGTACTTCACAACGTGCACAATGACACTTCTTATACTGGACTTCC
AACTTGTCCAAAACAACTTCATCAAAAATTAGAGTTATGCAAACAAAACA
AGAACCACGAGTTGAACAAAGTGTTGAACAAAGAACAATGGGAGATATTA
TGTCCACAAAATGGATCATCCAACCCAGAAGATTGGGATATCACCTTACT
GATTGCTGTATTAAGGTCAGTGGTTGGATTGCAACCTGCTGGAGGATGGA
AAATCAAATCTCTTCAACCCAACGATCAATCTATTGGAGCTTTCTTGTTT
TTGAtc

Coding sequence (CDS) from alignment at scaffold_485:74814..75169+

>TCONS_00068450 ID=TCONS_00068450|Name=TCONS_00068450|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_485:74814..75169+ (Clytia hemisphaerica)
TGGATTCGCATCAACCTCGCTTTGGAGTATTGCATCAAAGAAGTGCTCAT
TGGTGTACTTCACAACGTGCACAATGACACTTCTTATACTGGACTTCCAA
CTTGTCCAAAACAACTTCATCAAAAATTAGAGTTATGCAAACAAAACAAG
AACCACGAGTTGAACAAAGTGTTGAACAAAGAACAATGGGAGATATTATG
TCCACAAAATGGATCATCCAACCCAGAAGATTGGGATATCACCTTACTGA
TTGCTGTATTAAGGTCAGTGGTTGGATTGCAACCTGCTGGAGGATGGAAA
ATCAAATCTCTTCAACCCAACGATCAATCTATTGGAGCTTTCTTGTTTTT
GAtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042712XLOC_042712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068450-exon-scaffold_485-1491911889:74814..75169TCONS_00068450-exon-scaffold_485-1491911889:74814..75169Clytia hemisphaericaexon
TCONS_00068450-exon-scaffold_485-1510915933:74814..75169TCONS_00068450-exon-scaffold_485-1510915933:74814..75169Clytia hemisphaericaexon
TCONS_00068450-exon-scaffold_485-1575043694:74814..75169TCONS_00068450-exon-scaffold_485-1575043694:74814..75169Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068450-proteinTCONS_00068450-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:74814..75169 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.580149	0	0	0	0	0	0	0.510121	0.307992	0	0.231139	1.66637	1.41572	0	0	0	0.226488	0.382579	0	0	0	0	0	2.58577	0.788367	0	0.600529	0.395544	1.01668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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