TCONS_00068503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068503
Unique NameTCONS_00068503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068503 ID=TCONS_00068503|Name=TCONS_00068503|organism=Clytia hemisphaerica|type=transcript|length=601bp
AAAGTGCATAACAtgtacattttattcaaaaacaaaacagacagACAGTT
GTTATAGAAAAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTA
AGCATTTTCATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGA
AAGCAGGAACATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCA
GGAGGAGCCGTCAAAAGCCTGCCAAGGTTCATTTCAACGGTCGCCGAATC
AAAACCAAGCAAAACCGAAAAACACGATCGCTGAGCAATCAggaaattga
tgacgtcatcaaacaaATTGAGGAGATTTCAATCATTCGATGAAGATGTC
AAAGTATTGAAATTGAATTCAAAATAGTAGAGTCGAAGTGATGACGAAAT
TATTCGCCCAACAAACTTCACAGCGTTTTGGTTGAGTACAACGACATCGA
AGATTAAACGCAGTATTTAGGGTTAGGCTTTACACACGAGGGTGCCAAAA
AACCCTCCCCCTAAAAATGATATGACGTAACTTCTATCATCAAGTGTTAA
ATGAGTGGTTCAATCAGATGACCTAAGAAATTCAGCTATGCGTTCTGAAA
A
Run BLAST on NCBI

protein sequence of TCONS_00068503-protein

>TCONS_00068503-protein ID=TCONS_00068503-protein|Name=TCONS_00068503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
KCITCTFYSKTKQTDSCYRKVHFTLKTMNNILLSIFILVVILTAMVPSCE
SRNIGCIGIRYRQRHCRRSRQKPAKVHFNGRRIKTKQNRKTRSLSNQEID
DVIKQIEEISIIR
Run BLAST on NCBI

transcript from alignment at scaffold_485:437189..440476+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068503 ID=TCONS_00068503|Name=TCONS_00068503|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at scaffold_485:437189..440476+ (Clytia hemisphaerica)
AAAGTGCATAACAtgtacattttattcaaaaacaaaacagacagACAGTT GTTATAGAAAAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTA AGCATTTTCATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGA AAGCAGGAACATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCA GGAGGAGCCGTCAAAAGCCTGCCAAGGTAAATATCTTTCAGAAACTTTTC TGTTTGCACACAAGCGCACTTAATCCCCCCTAAGGCCCCCATTATATGAT GAGAGAAGTGAGGGGAAGTAAATGAGGTGTTACTGTTCAACTTGATGGGG TCAAGTGGCTGTTGGTTTGTATTGCTCTAAGAATCAAATTTAGGGTTTGT AAATTGTGACTTATGGATAATAAGGAGTTATTTTGTTCTAGCCAGGTTCT AAAGCAAGCGCTATATACTTTGAGCAAAATCAACCGTCGACAGAAACATA CACATACTAACAGAAGAATTGTATGATGAGGGAATTGTTTTGGTACATTA CCACACACCACTTAACTTATTGCGGAAAATCGCTACAAATGTACTTTTGT TATTATGAATGAAAATACGTTTGCAGAAGGGACGGCTTTTCTAGAGTGCT CCAAACGCTTTTTagttgaaaaagattttattcGATAATGGTCGTGacag tttttaaaatgtttaaatggccaaaaagttaaaagttttcTCATCTTCAG GATGAATGCAGAACATTTCtgcaaaaataactttttgttttgatcatttt gaacGTCAGTCCGAAAAAACCGTTTTATCGCTATACTAATATGTAATTTT CGAAACAATAATTTTGCGAAATGTTTTTTGCGCGCGGAGGTGCAAATTCT ATAAAATACAGTATCTATTTTTGGAGAGCTGAGGATTTTGCAATTCCGTC AACAGAAATTAGAAATGTTGTAATGGCCGTTTAtgaaatattgacttttt taCGATCAAAGATTTTCCATTGATATCAGTCATTGTTTATCCATCCCTAC ATTTATTTGCTCATCTCATTTCCTTTGTGAAAAAAACTTGGTTCGAatga acaaacaaaaaaatctacCCAGGAAATTGGGGGGTCTTTTTACAGAGGGA TGAGTTGTCAACACTTTTAGGGGGATTTGTAAATGTTTTGTTTACCTTAA CAAACTTAAGGACGAGCCGCTCTCTTTGTTTTCTTAAACACTCCAAATAA ACAAGTAGATACAGTACAAGTAACACCGACTGTCATATTTTTCCCGGCCA ATTTTTTGCTAAAGATTTTTCAAGAGAATTTCTAAAACTTTTTCACAATT ATCAAGAAAAGTTATCTTTCAATCCATCATACAAAActaattctttttta atgagcataactcagagtttcatgtgTCCACCGTATGCActcatttaaaa aagaaaaattttgttttgttggatGGATTGAAAGATGACTTTTTTTGATA ATTATATTACCCATCGAGCTTTGGTTAACCATCGAGCACTCTGACATCAT CGATTCGTCTAACCTTGATAAAACTATTTCACAAaaacttaaagaaaaat taaaattcatatGGTTGTTCTTTCGTAGTATAGGTTGATAAATTAAGAAG TGTATGTATGTGTGCACGCCATCATTTTCGACCTTTAACGAGAGTATATA TCGGAATGGAATAGACAGGGGTTTATATCTCGCTAAAGACAAAACTTAAC TTTTTTGCCTGGCAATCTGCAATATAAAGTCAACATTGAATcattaattt tatcaaaagcaTTATAATCTAACGAAAATATTCAGAGACTTTGATATTAG TTCAGCGTTGATAAATTAAGATATGTATGTATGTGTGCACGCCATCATTT TCGACCTCTAATGAGATTATATATCGGAATGGGATAGACAGGGGTTTCTG AAAAAATATCTCGCTAAAGACAAAACTTAACTTTTTTGCCGGACAATGTA CAATACATAGAGAATcattaattttatcaaaagcaTTATAATCTAACGAA AATATTCAGAGACTTTGATATTAGTTCAACGATGAGAGCTTTCAACAAAG TTATAATAATTCATGAACGTAAATTTCACAAAGTTTGTACTAATGCGAAT CATGAAAGTAAATTTCATGAAGTTTGTACTAATGCGACAGAGATATGCCG CGTGTCAACACTTTCACAATTCCTGACGTTAAAACTTAAAGAAATCTATA TTTTTGTTTACCCTGTTACTGTTTTGGATCCTTTatatatgaataaataa aaacaaacattttcataaCCAAGGCATTTGAATAAAACAATGTCTTCATG AATTAAAGCGATATTTACCGTTAACTGTCGAAGTTTTTATAACGACCACA AGAACGGCCAAAAGGAatcgttttttaaaaaaaattattttttcgaaata tttcataaattcTATGCAACTTCAGAACTACAAAAAATAACACGTGGGGA AGGGATCGACAGTTCGCAGCTTCTTTGCTTGGGGTCTTTAAATTACTTTA GTGGGGGATAATTCAAAGGTCACTTGAGGTCACACCCTGATATAATCCAA GTtacccaaatatattttttccacAATATTCAAGTCTTTGACGTATAAGC AACGAAACTTCTTTTTGCGGTGTGCGAAAGTAAAGGCTCTAATCCCAAGA AGTACTTTCCATACAAATCTTTTGAAGACTTTGAACAGATAATACTTTAA AAATCTCTCCGGATTACTAAGTTATCCCTTGACAACTTATTTTTATCTCC TTGAAGAGGGTGCTACTTGAGTGAGAGATCACAGACTGATTTAACTAACA AATCATTACGCAACATTCCatggtctgtattttcaaaaagttttccattt tttgtGTTCTCAGGTTCATTTCAACGGTCGCCGAATCAAAACCAAGCAAA ACCGAAAAACACGATCGCTGAGCAATCAggaaattgatgacgtcatcaaa caaATTGAGGAGATTTCAATCATTCGATGAAGATGTCAAAGTATTGAAAT TGAATTCAAAATAGTAGAGTCGAAGTGATGACGAAATTATTCGCCCAACA AACTTCACAGCGTTTTGGTTGAGTACAACGACATCGAAGATTAAACGCAG TATTTAGGGTTAGGCTTTACACACGAGGGTGCCAAAAAACCCTCCCCCTA AAAATGATATGACGTAACTTCTATCATCAAGTGTTAAATGAGTGGTTCAA TCAGATGACCTAAGAAATTCAGCTATGCGTTCTGAAAA

Coding sequence (CDS) from alignment at scaffold_485:437189..440476+

>TCONS_00068503 ID=TCONS_00068503|Name=TCONS_00068503|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_485:437189..440476+ (Clytia hemisphaerica)
AAGTGCATAACAtgtacattttattcaaaaacaaaacagacagACAGTTG
TTATAGAAAAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTAA
GCATTTTCATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGAA
AGCAGGAACATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCAG
GAGGAGCCGTCAAAAGCCTGCCAAGGTTCATTTCAACGGTCGCCGAATCA
AAACCAAGCAAAACCGAAAAACACGATCGCTGAGCAATCAggaaattgat
gacgtcatcaaacaaATTGAGGAGATTTCAATCATTCGATGAAAGTGCAT
AACAtgtacattttattcaaaaacaaaacagacagACAGTTGTTATAGAA
AAGTGCATTTCACTTTAAAGACAATGAATAACATTTTACTAAGCATTTTC
ATTCTGGTGGTCATTTTAACAGCTATGGTACCATCTTGCGAAAGCAGGAA
CATTGGTTGTATCGGAATTCGTTACCGGCAAAGACATTGCAGGAGGAGCC
GTCAAAAGCCTGCCAAGGTTCATTTCAACGGTCGCCGAATCAAAACCAAG
CAAAACCGAAAAACACGATCGCTGAGCAATCAggaaattgatgacgtcat
caaacaaATTGAGGAGATTTCAATCATTCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042727XLOC_042727Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068503-proteinTCONS_00068503-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068503-exon-scaffold_485-1491911889:437189..437414TCONS_00068503-exon-scaffold_485-1491911889:437189..437414Clytia hemisphaericaexon
TCONS_00068503-exon-scaffold_485-1510915933:437189..437414TCONS_00068503-exon-scaffold_485-1510915933:437189..437414Clytia hemisphaericaexon
TCONS_00068503-exon-scaffold_485-1575043694:437189..437414TCONS_00068503-exon-scaffold_485-1575043694:437189..437414Clytia hemisphaericaexon
TCONS_00068503-exon-scaffold_485-1491911889:440102..440476TCONS_00068503-exon-scaffold_485-1491911889:440102..440476Clytia hemisphaericaexon
TCONS_00068503-exon-scaffold_485-1510915933:440102..440476TCONS_00068503-exon-scaffold_485-1510915933:440102..440476Clytia hemisphaericaexon
TCONS_00068503-exon-scaffold_485-1575043694:440102..440476TCONS_00068503-exon-scaffold_485-1575043694:440102..440476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:437189..440476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (16.9592 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0905044 0 0 0 0 0 0 0.217865 0.762664 0.661277 0.825238 1.02468 16.4323 15.5024 16.9592 10.8647 3.66883 3.41225 9.71703 3.92632 1.48758 2.04873 1.14148 0.75474 1.6519 0.607057 0 0 1.20543 1.33049
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
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