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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068671 ID=TCONS_00068671|Name=TCONS_00068671|organism=Clytia hemisphaerica|type=transcript|length=1677bp
ACGAAAACTGGAATCACTGATTGGCTATATATAGATAGGAGTCAAGTTAC
CAGTGCACGAATGACTCCAGTGCACGAACAACGCACctctttgaacttga
aaaaaaaaaaccaaaaacaaatttctatagaatttcctttgtgcagcaga
atcctcGAACTATTCCTAGCAATctgtccaaaaattaaaataaacggaGC
ACTAGATCTCGAACAACACCGACCAAACCAATTTTGAGAGAagccaagta
aaaaaatcatgaaatttgggatttttgtaaacatggctGATCGCGAgatg
aaatgttttttataaggtgATTATGAACAAGAAGAGTTCTGAACAATCCA
AACACActatattcaaaatgaagacattgcaacgtcaaaacattcgaCAG
CTTGCGAtcacaattaaaaaagaagggGAAAAGAAGACACGTCGTGCTTT
TCGAtgagaaaaacttgaaaaagaaaacaaaaaacggacgacaaaaattt
ttttacaaaaataagcaggttagtaaaacgctaaagttcttataaaaaag
atgctttttaagtgaaaaagcgcgtggttttgaaaagttcaaatacccct
gtatcatctcgGAGGAGAGTTAAAGTATTACTATTACCTGCGAGTGGAGc
tgtaattttttctttcaaaagatcgttcGCGCACTGGTTACCGTAGGACG
GGGTGAGTTGGATAcccggggtgaatcggataatTTGTTTAATCGCCTCT
CATACTTCACTGACAATGTCTTTTTCCATTCTGTTTTCAGATCCCGTTCA
CTGATCGGTCAAGCTATCGGAAAAATATGGCTTCAAAGATTTGGAACATG
TTCTtcggaaattgaagaagaaaaccttctgattttcggatccttttttg
aaatgccGAATAAGAAATAATGAAGCGACCGTGATTGGAGATTCCTTTGT
AACCAAATAGAAATActaaaaatcaacattttaatAACTTAGATAATGCT
AATCTTTGAAAATCCTGCATCGCTGCttacaattttgtttttttgttatg
ttttttgcAGTTCATTATTTAAAGAGGCTCAgctacaaaaaaatcattta
aaaatggTGGAGTTATGTGTGGATGATAGAAATATGGCTTTGACTGTGGA
TAATATCTTGCCTTTGGAAAATCAATTCATTCAATCAATTCTAATATGAC
TTTGCCATACTCGTTTCAAAGAATATTCTGTCTTCTATGGCAAGGGTTTC
CCTTGGCGAAATATTCACTGGATTCCATACATTTTTGGTTTGTCTTGTTT
AGCCTAGCAAAACTGAAATAGAGCACAGACAAATGCCCCAAATTTTGCCC
ATAATACTTGTCTTTTTAACCTTTTCACatcagtctagaaccaaaattTA
CAATCCTTCAAAGTATGCAAAACAATGGGCAAACTGGACCTCGTTAATAA
TTAAGGACTGGAGCTTAGATATCCCAGGAACTTGGATATTCCAGGAACTT
TTTTCCAGAACAGGCTTACTGGGAATAGAAGGGATTGGGCTCCAAAACGT
TGAGAGTTAGCCTTTTAAATAAATTGTCtgctgattttttttctgaagtt
aaAATTTATTTCTTCATAATATATCTTTGCTACAATTTATTGCATGAACT
TCAGATTCAGAATTTTGTTGACCTGAC Run BLAST on NCBI transcript from alignment at scaffold_486:311459..313135 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068671 ID=TCONS_00068671|Name=TCONS_00068671|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_486:311459..313135 (Clytia hemisphaerica)
GTCAGGTCAACAAAATTCTGAATCTGAAGTTCATGCAATAAATTGTAGCA
AAGATATATTATGAAGAAATAAATTttaacttcagaaaaaaaatcagcaG
ACAATTTATTTAAAAGGCTAACTCTCAACGTTTTGGAGCCCAATCCCTTC
TATTCCCAGTAAGCCTGTTCTGGAAAAAAGTTCCTGGAATATCCAAGTTC
CTGGGATATCTAAGCTCCAGTCCTTAATTATTAACGAGGTCCAGTTTGCC
CATTGTTTTGCATACTTTGAAGGATTGTAaattttggttctagactgatG
TGAAAAGGTTAAAAAGACAAGTATTATGGGCAAAATTTGGGGCATTTGTC
TGTGCTCTATTTCAGTTTTGCTAGGCTAAACAAGACAAACCAAAAATGTA
TGGAATCCAGTGAATATTTCGCCAAGGGAAACCCTTGCCATAGAAGACAG
AATATTCTTTGAAACGAGTATGGCAAAGTCATATTAGAATTGATTGAATG
AATTGATTTTCCAAAGGCAAGATATTATCCACAGTCAAAGCCATATTTCT
ATCATCCACACATAACTCCAccatttttaaatgatttttttgtagcTGAG
CCTCTTTAAATAATGAACTgcaaaaaacataacaaaaaaacaaaattgta
aGCAGCGATGCAGGATTTTCAAAGATTAGCATTATCTAAGTTattaaaat
gttgatttttagTATTTCTATTTGGTTACAAAGGAATCTCCAATCACGGT
CGCTTCATTATTTCTTATTCggcatttcaaaaaaggatccgaaaatcaga
aggttttcttcttcaatttccgaAGAACATGTTCCAAATCTTTGAAGCCA
TATTTTTCCGATAGCTTGACCGATCAGTGAACGGGATCTGAAAACAGAAT
GGAAAAAGACATTGTCAGTGAAGTATGAGAGGCGATTAAACAAattatcc
gattcaccccgggTATCCAACTCACCCCGTCCTACGGTAACCAGTGCGCg
aacgatcttttgaaagaaaaaattacagCTCCACTCGCAGGTAATAGTAA
TACTTTAACTCTCCTCcgagatgatacaggggtatttgaacttttcaaaa
ccacgcgctttttcacttaaaaagcatcttttttataagaactttagcgt
tttactaacctgcttatttttgtaaaaaaatttttgtcgtccgttttttg
ttttctttttcaagtttttctcaTCGAAAAGCACGACGTGTCTTCTTTTC
cccttcttttttaattgtgaTCGCAAGCTGtcgaatgttttgacgttgca
atgtcttcattttgaatatagTGTGTTTGGATTGTTCAGAACTCTTCTTG
TTCATAATcaccttataaaaaacatttcatcTCGCGATCagccatgttta
caaaaatcccaaatttcatgatttttttacttggctTCTCTCAAAATTGG
TTTGGTCGGTGTTGTTCGAGATCTAGTGCtccgtttattttaatttttgg
acagATTGCTAGGAATAGTTCgaggattctgctgcacaaaggaaattcta
tagaaatttgtttttggtttttttttttcaagttcaaagagGTGCGTTGT
TCGTGCACTGGAGTCATTCGTGCACTGGTAACTTGACTCCTATCTATATA
TAGCCAATCAGTGATTCCAGTTTTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068671-exon-scaffold_486-1491911889:311459..313135 | TCONS_00068671-exon-scaffold_486-1491911889:311459..313135 | Clytia hemisphaerica | exon |
| TCONS_00068671-exon-scaffold_486-1510915933:311459..313135 | TCONS_00068671-exon-scaffold_486-1510915933:311459..313135 | Clytia hemisphaerica | exon |
| TCONS_00068671-exon-scaffold_486-1575043694:311459..313135 | TCONS_00068671-exon-scaffold_486-1575043694:311459..313135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:311459..313135 . |
Blast
The following BLAST results are available for this feature:
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