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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068872 ID=TCONS_00068872|Name=TCONS_00068872|organism=Clytia hemisphaerica|type=transcript|length=6969bpRun BLAST on NCBI protein sequence of TCONS_00068872-protein >TCONS_00068872-protein ID=TCONS_00068872-protein|Name=TCONS_00068872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp MSTPDVMESRDDSMTDLSKVPETADEFAHPPPIKQNPPDEQKLPQYDGQDRun BLAST on NCBI transcript from alignment at scaffold_49:475468..487511- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068872 ID=TCONS_00068872|Name=TCONS_00068872|organism=Clytia hemisphaerica|type=transcript|length=12044bp|location=Sequence derived from alignment at scaffold_49:475468..487511- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:475468..487511- >TCONS_00068872 ID=TCONS_00068872|Name=TCONS_00068872|organism=Clytia hemisphaerica|type=CDS|length=18774bp|location=Sequence derived from alignment at scaffold_49:475468..487511- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068872 vs. Swiss-Prot (Human)
Match: AAKG1 (5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1) HSP 1 Score: 363.614 bits (932), Expect = 3.506e-112 Identity = 172/295 (58.31%), Postives = 227/295 (76.95%), Query Frame = 1
Query: 4138 YATFLKKHSCYDIIPNSSKIVVFDTRLKVKKAFFALVHNSIRSAPLWDSNEQDFVGMLTITDFINILIRYYKSPLEKMWELEEHQIETWRNLFKKNIHSTLLRISPTESLFTGVQTLMKNKIHRLPVIDEETGNAMYILTHKKILAYVYQHLDDLVMPDFLGKTIEEIGIGTYGDIATISPTAKLIEALNMFHERKVSALPVVGEDRKCVDIYSRFDVMNLAAERTYNNLDITVSEALSYRQVRVEGIHKCYPHETFYAIIDRIANAKVHRLIVEDSDHCIKGIVSLSDILRFLV 5022
Y +F+K H CYD+IP SSK+VVFDT L+VKKAFFALV N +R+APLWDS +Q FVGMLTITDFINIL RYYKS L +++ELEEH+IETWR ++ ++ L+ ISP SLF V +L++NKIHRLPVID E+GN +YILTHK+IL ++ + + P+F+ K++EE+ IGTY +IA + T + AL +F + +VSALPVV E + VDIYS+FDV+NLAAE+TYNNLD++V++AL +R EG+ KCY HET II+R+ A+VHRL+V D + +KGIVSLSDIL+ LV
Sbjct: 29 YTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALV 323 The following BLAST results are available for this feature:
BLAST of TCONS_00068872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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