TCONS_00000678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000678
Unique NameTCONS_00000678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000678 ID=TCONS_00000678|Name=TCONS_00000678|organism=Clytia hemisphaerica|type=transcript|length=750bp
NAACAATCGATCTTCCCAAGTCaatggaaaatatcaaaaatcagcCCAAT
TCCTAAAATTGAATCACCGAATGAGCCAAGTGATTATCGTCCAATATCGA
TTTTACctattctatcaaaagtttacGGGAAACTCATCATGATACAAATG
ACAAACTTTCTTGAACACCAGGAACTCTTGTCACAATACCAATCTGGCTT
TCGTAAGGGCCATTGCACTGTAACCACAtgtattaaaatcaaaaatgaca
TTCTGAAAGCTATGCACCACGGAGAGATCACACTTGCTGTTCTTGCCGAT
TTCTCGAAAGCATTTGACACCGTTGACTTTGAAACTCTGATAAAAAAGCT
TCATTCGCTCCACTTCTCGAAGAAGTCCTTAAGTATTCTTGCAAACTACC
TCAGCAGTCGACAACAGTACGTACAAATTGATGATAAGAGATCACCCGTC
TTAACTGTCACTAATGGTGTGCCGCAAGGGAGCATATTGGGTCCCGTCCT
CTTTAACATCTATGTTCACGACATGGCATCTAAGACCACCGCCAAATGTG
TTCAGTATGCCGACGACACCAGCATCTATCGTCACACCAAACCTGCCAAC
CTTGAACTAATTAGTCAAGAAGTTCAGAACGATGTCAATGTTATCGAGGA
GTGGTCACGCGACTCAAACTTAATCTTCAAtgcaaaaaagacaaaatcga
TGCTCTTTGCCACCAGTCAAATGGCACGAAGACACGACTTTTCTTTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00000678-protein

>TCONS_00000678-protein ID=TCONS_00000678-protein|Name=TCONS_00000678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
XQSIFPSQWKISKISPIPKIESPNEPSDYRPISILPILSKVYGKLIMIQM
TNFLEHQELLSQYQSGFRKGHCTVTTCIKIKNDILKAMHHGEITLAVLAD
FSKAFDTVDFETLIKKLHSLHFSKKSLSILANYLSSRQQYVQIDDKRSPV
LTVTNGVPQGSILGPVLFNIYVHDMASKTTAKCVQYADDTSIYRHTKPAN
LELISQEVQNDVNVIEEWSRDSNLIFNAKKTKSMLFATSQMARRHDFSFE
Run BLAST on NCBI

transcript from alignment at sc0000002:1671661..1672410

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000678 ID=TCONS_00000678|Name=TCONS_00000678|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at sc0000002:1671661..1672410 (Clytia hemisphaerica)
CTCAAAAGAAAAGTCGTGTCTTCGTGCCATTTGACTGGTGGCAAAGAGCA
tcgattttgtcttttttgcaTTGAAGATTAAGTTTGAGTCGCGTGACCAC
TCCTCGATAACATTGACATCGTTCTGAACTTCTTGACTAATTAGTTCAAG
GTTGGCAGGTTTGGTGTGACGATAGATGCTGGTGTCGTCGGCATACTGAA
CACATTTGGCGGTGGTCTTAGATGCCATGTCGTGAACATAGATGTTAAAG
AGGACGGGACCCAATATGCTCCCTTGCGGCACACCATTAGTGACAGTTAA
GACGGGTGATCTCTTATCATCAATTTGTACGTACTGTTGTCGACTGCTGA
GGTAGTTTGCAAGAATACTTAAGGACTTCTTCGAGAAGTGGAGCGAATGA
AGCTTTTTTATCAGAGTTTCAAAGTCAACGGTGTCAAATGCTTTCGAGAA
ATCGGCAAGAACAGCAAGTGTGATCTCTCCGTGGTGCATAGCTTTCAGAA
tgtcatttttgattttaatacaTGTGGTTACAGTGCAATGGCCCTTACGA
AAGCCAGATTGGTATTGTGACAAGAGTTCCTGGTGTTCAAGAAAGTTTGT
CATTTGTATCATGATGAGTTTCCCgtaaacttttgatagaatagGTAAAA
TCGATATTGGACGATAATCACTTGGCTCATTCGGTGATTCAATTTTAGGA
ATTGGgctgatttttgatattttccattGACTTGGGAAGATCGATTGTTN

Coding sequence (CDS) from alignment at sc0000002:1671661..1672410

>TCONS_00000678 ID=TCONS_00000678|Name=TCONS_00000678|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000002:1671661..1672410 (Clytia hemisphaerica)
CTCAAAAGAAAAGTCGTGTCTTCGTGCCATTTGACTGGTGGCAAAGAGCA
tcgattttgtcttttttgcaTTGAAGATTAAGTTTGAGTCGCGTGACCAC
TCCTCGATAACATTGACATCGTTCTGAACTTCTTGACTAATTAGTTCAAG
GTTGGCAGGTTTGGTGTGACGATAGATGCTGGTGTCGTCGGCATACTGAA
CACATTTGGCGGTGGTCTTAGATGCCATGTCGTGAACATAGATGTTAAAG
AGGACGGGACCCAATATGCTCCCTTGCGGCACACCATTAGTGACAGTTAA
GACGGGTGATCTCTTATCATCAATTTGTACGTACTGTTGTCGACTGCTGA
GGTAGTTTGCAAGAATACTTAAGGACTTCTTCGAGAAGTGGAGCGAATGA
AGCTTTTTTATCAGAGTTTCAAAGTCAACGGTGTCAAATGCTTTCGAGAA
ATCGGCAAGAACAGCAAGTGTGATCTCTCCGTGGTGCATAGCTTTCAGAA
tgtcatttttgattttaatacaTGTGGTTACAGTGCAATGGCCCTTACGA
AAGCCAGATTGGTATTGTGACAAGAGTTCCTGGTGTTCAAGAAAGTTTGT
CATTTGTATCATGATGAGTTTCCCgtaaacttttgatagaatagGTAAAA
TCGATATTGGACGATAATCACTTGGCTCATTCGGTGATTCAATTTTAGGA
ATTGGgctgatttttgatattttccattGACTTGGGAAGATCGATTGTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000424XLOC_000424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000678-exon-sc0000002-1491911889:1671661..1672410TCONS_00000678-exon-sc0000002-1491911889:1671661..1672410Clytia hemisphaericaexon
TCONS_00000678-exon-sc0000002-1510915933:1671661..1672410TCONS_00000678-exon-sc0000002-1510915933:1671661..1672410Clytia hemisphaericaexon
TCONS_00000678-exon-sc0000002-1575043694:1671661..1672410TCONS_00000678-exon-sc0000002-1575043694:1671661..1672410Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000678-proteinTCONS_00000678-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1671661..1672410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.374015	0.515618	2.02498	1.40502	0	0.410734	0.614	0.352814	0.195968	0.513035	0	0.557296	0.975687	1.14249	1.16121	1.66788	0.567746	0.233633	0.977021	1.43342	0	0.505174	0.627674	0.390234	0.109486	0.422185	0.619116	0.191931	1.99979	2.61626
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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