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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069158 ID=TCONS_00069158|Name=TCONS_00069158|organism=Clytia hemisphaerica|type=transcript|length=1525bp
CGAGAAGAGAGTTGCTGAGATATTTATTAAGAATCATTTCTTGAACTTTG
ttcttttttctacaaaaacatGCtagatttATGTATCGACCCAAATTCGG
ATCGATTAAATTCAGAAATGTACTGAATCTAGACTTGACGGAGGATTAGA
TAATGATGTCGTACGGCTAGTTAACAGGAATaattaaaaaacattaaaaa
cccTTTGTAAAGCTCACccaagaaataaaaacaattttaaccaAGGCTTT
AAGAATATGGGGAGAGAAATTAGATTCacaatttgtttcattttgatatt
tttgtcaaCAATACAATCAAACCtggatccaagccacgatatcAACACAA
TCAATACCACAAGTGAAATTCTTTATGGAGTACCTTGTCATAAAGATATT
GGTAAATCGTCTGCCGTGAATTTCAACCATAATTCAGAACGccagatttt
caaaaaggataaaaaGTACACATCTTCACAATGGGTTATGCAACTTCGTC
TATCAAGCATTAACACTGTGGTCAACTCAATGCTGGTCATTGATAACAGC
ACCGTCATTGAAATGTTTCTTGAtaAATACAGAGTCACCTCTCTGACCAA
CACAACTGTAACCACAAGTAAATTGCAATCCATCTTCTCACACATTTATG
ACATCTCAATAACATGTGCATCATCAACTATCAATGAAATCGCTGTAAAG
GTTCAACTAATTGACACCAAAATTATTGGCGTTAACCATAAACATATCCa
accaaaaaaATGTTTCAAAGACAAATCCAGAAGTCTCAAAAGCCCGTATC
ATAATGGCGACCATTGTCGGTATAGTATTCGGTATGTGTTTGAGTACCGC
TGTTATAGTGATTGTATTATACCGGAAAAGAAAACGGAAAGTGCCAGAAG
ATCCGGAAGAGATGTCAAAACATACGGAAGACGAGCTTAGTGGAGATAAT
acgaaaaatgatgaaaattataGTTCCAATACAGGAGATGAAGACTCAAG
GCAATCTGTTGATATATGTGAAGGTGGAACTTCAAGAGATTTTGGTGCAC
TTAACGGATTGAATTTAGAACATTTACAAAGATTAAATAAATTGTTTAGT
TCAACTGTTGCAGCGGACGGTGAGGGACAAAAGGAAAGTAAAGATGAAGC
AAATGAAAAGGATAACTCATCTCaaaatgatgatgaaatacGCTGTGAAA
GTCAGTTTCAGTCGAGATGGggtttttataagatgctttgatAATTGgtg
ataattggtcatttgaagtaataaaatgacacgttctttagaaaaaagga
acaagattgttttattactggttaacgaccaactaaattaaataagagct
tgtaaactNgcctgccccaaagttttagcctcgttttggcgaaaactcgt
gaccacacccttaaaaatgaaaattttcaaaaaatgaaaaaaacatccgc
agatattcacccaaggaacaagtgtgccatttatatgaacaaactataag
gtttcgatggctaaaaaatcaaaat Run BLAST on NCBI transcript from alignment at scaffold_495:172401..176837+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069158 ID=TCONS_00069158|Name=TCONS_00069158|organism=Clytia hemisphaerica|type=transcript|length=4437bp|location=Sequence derived from alignment at scaffold_495:172401..176837+ (Clytia hemisphaerica)
CGAGAAGAGAGTTGCTGAGATATTTATTAAGAATCATTTCTTGAACTTTG
ttcttttttctacaaaaacatGCtagatttATGTATCGACCCAAATTCGG
ATCGATTAAATTCAGAAATGTACTGAATCTAGACTTGACGGAGGATTAGA
TAATGATGTCGTACGGCTAGTTAACAGGAATaattaaaaaacattaaaaa
cccTTTGTAAAGCTCACccaagaaataaaaacaattttaaccaAGGCTTT
AAGAATATGGGGAGAGAAATTAGATTCacaatttgtttcattttgatatt
tttgtcaaCAATACAATCAAACCtggatccaagccacgatatcAACACAA
TCAATACCACAAGTGAAATTCTTTATGGAGTACCTTGTCATAAAGATATT
GGTAAATCGTCTGCCGTGAATTTCAACCATAATTCAGAACGccagatttt
caaaaaggataaaaagtaatttgatttttttgttactgtccccatctttg
ctgaaaacatatttttgtttgaaTGCATTCATTACATGTTAAATTTAGGT
GAATtttggatcctaacctaaaAAAAAGATTAGNTATTTTTGTGTTTGAA
TGCATTCATTACATGTTAAATTATGAATTTTGGATCCTAACCTGAAAAAA
TCTTCTCTGGTCACAAATATTTGACATTCATTGGTCTGTAATAATATTCG
TTGTTTTACTATTAAGGTACACATCTTCACAATGGGTTATGCAACTTCGT
CTATCAAGCATTAACACTGTGGTCAACTCAATGCTGGTCATTGATAACAG
CACCGTCATTGAAATGTTTCTTGAGTAAGCTTACTTTACTTTATTTGATA
TGCCCAAAAAATAGAAGTAAATAAAATAAAGGCTAATTTCAAATTGTTAA
TCTAAATGAGAAGTCgcgggaattaaattttgcgaatttaaGGGGTTTca
ttagcgagcacctcaccaaaaaccagcatttttcactttttcagttccac
tttgatgattttcgagaaaaaaatgtacttttcaaatattttttttgacg
CAGATTCGATTTTTCCCTACTGCAAGAGCTTCGGAAGTTTAGAATGACGT
CAAAAATCGAGTATTAGAAGCATTTGAAAAGgccgcaaagtggaatagac
gtgtTACTGCGTagaatgcgtgaatgcgtaaatgggctttttcacttgct
tgaatgcgtgaaaataaaTGTATCAGATAAGGTTTCATATAAGAAGTACG
AATAAGGTCTATCCAAGAAATAAAAAACAGTCAACAATTAACAATCACAG
TTTGGCGGTGAAAGTCCAAATCATTTAATGCGATagtcattttcttattt
ttcagtaAATACAGAGTCACCTCTCTGACCAACACAACTGTAACCACAAG
TAAATTGCAATCCATCTTCTCACACATTTATGACATCTCAATAACATGTG
CATCATCAACTATCAATGAAATCGCTGTAAAGGTTCAACTAATTGACACC
AAAATTATTGGCGTTAACCATAAACATATCCaaccaaaaaagtaaaaacg
ttTTTCATATATACTATTAACGCTCTCTGATTCGTTTTTCAAGgcgaatt
ggattttcatcgaataagggaggaTATTGAATAGTacagcgtcgtttatg
agagtttctcgtTGACGGTAACTTTAATCACCGAAAATAATGAAGTGTAT
TGAAAAGTAGAACATCGAATAAGAGAGTGTCAActataatataacaatag
cgttcagtttgaggtcgttgttgttattttctgcccgcgtagTTTGATTA
TTCGCCCGAAAGTGTCTTTTCGCAAATGGCACAAGAAATTTCACAAGAAA
TGGCACAAGAAATTTCAGtttcgtattcttatgaaattgttcttataaaa
aacgtgtaagacaaggcacggatgtcactctaagtagactgtaaatcact
cccttgtcacatttgttagcatttgaaagaattttgtctcagatgagagg
ccactcttaacaaaaattactgtagggctatcattccttttgaacgcaaa
ttcaactctatgtgttcgttttgatgcggtggcaccttaatggaAGTTAT
GGCTAGTAATAGCATTTAATTCGTCAAAAAGAaggaaaatattgaacaaa
CAATTTCTTTGTGGCACTTACATTAATTAGAAGGTGAAATTCCTTANAAC
AAACTATTTCTTTGTGGTGGCACTTACAGTAATTAGAAGGTGAAATTCCT
tgtcttttttaattcaaaagttCGATTCTTTGAAGTCACTGTCCAAGTTT
CcgtattaatttttttttcagcgaGCATTTCCTTCACACAAGCCCGATCG
GGTACTTCACATCATTTTATTATCCGTTTGGATACAAATATGGCAGCCGA
GTAGTGcacaaaatcaaaacttttggaaaacACAAGATAATTCACATCCA
TTTTATGGACGTTCAAATGACACAATATGGATTTGTTTGTAGCAGCCATG
ATGATAATCTAAGGATTAGAGGTTGGTTAACTAAGGTTACTATTCTAGAC
gtcagaatctcaaaatattattttcaattattgAAGTAAATGTAATGACT
TCGTTGATCCGatcatttttcacaaatttttgccatCTTTGCGAAAATAA
ATCTCGCGAAATTGTACGGAGAAGTTTCTACCAAGAAACCATATTATGAG
TTTTTAAGTTGGCATTATGCTGGAAAAAGACATATATTTTAGCaatgaac
ggataataaaccatttactTGAACTCAGTCTCATGCAATATGAAATAAAT
TAGGCTTCGAACGCACGCAGGCCAAATATTTTTGCGCATTATATTCGACC
CgctccaataattttttattagttGCAGTATAAGCTTTCCGTCAAGTAAA
GATATCTCTTGCTGAATTTCATCACTTGTGTAGGAATTTGTCCGACTTCA
AGACGTCAAAAACAGCATGAATGTTATTTCCGTGGATTACGTGGGAGCAG
TAAGGTTGTGTTTTTATCACAGCCCAAACAAAACCAATgtgtaaaaaatt
gaattatgaaATCCTATCAATTATCAACAGGCTTTTTCGATCTTTTCTAG
GAAGCGATCAACTTGATGAGAGGTTTGAATATGCAGATACAGTCGGTTAT
ACTTTAATGTGTCATTTCGATACACCATACTCGATTGAGGTCTCCGGCTA
CGAATATATCTTTATACAGTTCAATGCACTGCATTCAACCATCGCGCATC
GTGGGTACGCAATTGGTTATGAAATAAAGGATGGTATGCTTAaagctttt
atattttttatttaggcCGTATTGcatagaatatttttttaggttttgga
TCCCGAGATCTCAAAAGACTTGAGTCTaatgttgaaaatcaaaattgaat
tttacaCCCCAGAAGTAAATTAAagcaattaaaaaattttaccaGGAATT
TCCCTTCTATCAAATATTATGTCTTTGATTGTATTACGAGCTTGTAAGTA
CAGCTGACCCTCTCTAATTCGTCGATACGCTCCCTCATTCGATAGAATTT
AAAGCCCTAGTCATCAAGGGTCTCTCGTAAACGatattctattattcgat
aagctcctttattcgatgaaaatccaattccccttgaagatcttgaaaaa
ttcttctttctCATATTAAAGATGTTTCAAAGACAAATCCAGAAGTCTCA
AAAGCCCGTATCATAATGGCGACCATTGTCGGTATAGTATTCGGTATGTG
TTTGAGTACCGCTGTTATAGTGATTGTATTATACCGGAAAAGAAAACGGA
AAGTGCCAGAAGATCCGGAAGAGATGTCAAAACATACGGAAGACGAGCTT
AGTGGAGATAATacgaaaaatgatgaaaattataGTTCCAATACAGGAGA
TGAAGACTCAAGGCAATCTGTTGATATATGTGAAGGTGGAACTTCAAGAG
ATTTTGGTGCACTTAACGGATTGAATTTAGAACATTTACAAAGATTAAAT
AAATTGTTTAGTTCAACTGTTGCAGCGGACGGTGAGGGACAAAAGGAAAG
TAAAGATGAAGCAAATGAAAAGGATAACTCATCTCaaaatgatgatgaaa
tacGCTGTGAAAGTCAGTTTCAGTCGAGATGGggtttttataagatgctt
tgatAATTGgtgataattggtcatttgaagtaataaaatgacacgttctt
tagaaaaaaggaacaagattgttttattactggttaacgaccaactaaat
taaataagagcttgtaaactNgcctgccccaaagttttagcctcgttttg
gcgaaaactcgtgaccacacccttaaaaatgaaaattttcaaaaaatgaa
aaaaacatccgcagatattcacccaaggaacaagtgtgccatttatatga
acaaactataaggtttcgatggctaaaaaatcaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069158-exon-scaffold_495-1491911889:172401..172865 | TCONS_00069158-exon-scaffold_495-1491911889:172401..172865 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1510915933:172401..172865 | TCONS_00069158-exon-scaffold_495-1510915933:172401..172865 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1575043694:172401..172865 | TCONS_00069158-exon-scaffold_495-1575043694:172401..172865 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1491911889:173117..173224 | TCONS_00069158-exon-scaffold_495-1491911889:173117..173224 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1510915933:173117..173224 | TCONS_00069158-exon-scaffold_495-1510915933:173117..173224 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1575043694:173117..173224 | TCONS_00069158-exon-scaffold_495-1575043694:173117..173224 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1491911889:173756..173941 | TCONS_00069158-exon-scaffold_495-1491911889:173756..173941 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1510915933:173756..173941 | TCONS_00069158-exon-scaffold_495-1510915933:173756..173941 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1575043694:173756..173941 | TCONS_00069158-exon-scaffold_495-1575043694:173756..173941 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1491911889:176072..176837 | TCONS_00069158-exon-scaffold_495-1491911889:176072..176837 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1510915933:176072..176837 | TCONS_00069158-exon-scaffold_495-1510915933:176072..176837 | Clytia hemisphaerica | exon |
| TCONS_00069158-exon-scaffold_495-1575043694:176072..176837 | TCONS_00069158-exon-scaffold_495-1575043694:176072..176837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_495 | supercontig | scaffold_495:172401..176837 + |
Blast
The following BLAST results are available for this feature:
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