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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069460 ID=TCONS_00069460|Name=TCONS_00069460|organism=Clytia hemisphaerica|type=transcript|length=2320bpRun BLAST on NCBI transcript from alignment at scaffold_50:146263..184889- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069460 ID=TCONS_00069460|Name=TCONS_00069460|organism=Clytia hemisphaerica|type=transcript|length=38627bp|location=Sequence derived from alignment at scaffold_50:146263..184889- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069460 vs. Swiss-Prot (Human)
Match: MKNK2 (MAP kinase-interacting serine/threonine-protein kinase 2 OS=Homo sapiens GN=MKNK2 PE=1 SV=3) HSP 1 Score: 334.339 bits (856), Expect = 2.741e-105 Identity = 190/403 (47.15%), Postives = 256/403 (63.52%), Query Frame = 3
Query: 321 DLLYSQPM-IPENEXXXXXXXXXXXDSTQPTTFLDKYTLYPEVLGQGANSLVTVAEEKSSQKSYAVKIIEKTEGYDRIRVLREIDLLHFLSECPNILKLRDSYEDSTRFYLVFERMEGGPLLKHIEQKTHFTEKEASLVVKDIAAALKFLHDKGIAHRDLKPDNILCVNENQIVPVVICDFNLASGISMIGSA---TTPELYTPVGSAEYMAPEIVDAFVGDAPAYDKRCDLWSLGVILFIMLSGKPPFEGNCNESCVW--------------HSILDANFTFPPTEWENVSTEAKDLISHLLVKEASKRYSVEDVLNHPWLL-MASNNFLNTPDVLLSEGVSHHLSTVTSEAVAYRRIISERQNSQDEEEQSNHG--IISRWSTPPKFGLSPPGNSRLAKRR 1466
D+ SQP+ IP+ +K+ KKKK+ R + F D Y L +VLG+GA++ V + + YAVKIIEK G+ R RV RE+++L+ N+L+L + +E+ RFYLVFE+M GG +L HI ++ HF E EAS+VV+D+A+AL FLH+KGIAHRDLKP+NILC + NQ+ PV ICDF+L SGI + G +TPEL TP GSAEYMAPE+V+AF +A YDKRCDLWSLGVIL+I+LSG PPF G C C W SI + + FP +W ++S AKDLIS LLV++A +R S VL HPW+ A N L TP VL + L++ +EA+A R +++ EEE + G ++ R +T LSPP S+LA+RR
Sbjct: 47 DMPASQPIDIPDAKKRGKKKKRGRATDSFSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPENTLPTPMVLQRNSCAKDLTSFAAEAIAMNRQLAQHDEDLAEEEAAGQGQPVLVR-ATSRCLQLSPPSQSKLAQRR 448 The following BLAST results are available for this feature:
BLAST of TCONS_00069460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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