TCONS_00069493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069493
Unique NameTCONS_00069493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069493 ID=TCONS_00069493|Name=TCONS_00069493|organism=Clytia hemisphaerica|type=transcript|length=825bp
ATATTCGAAAATAAGCAAAGTATTAGCAAGACTAATCACCTAAATGTCCG
TCTATTAACGTGATCAGCAACTGAGATAAACTCGAACATCAACTATTTTG
TTCGCGTTCAGtcctctctttctctctctttcttaaaaaatgttttttta
gatcttacaactttctttttttgtttgatgATTCTGTTTTATGCGATCAA
GAAGGGATAGATTATGGAAAATGAGGCCCTAGCTTTCCTCCTCCGTCTTT
TTTTaagggaattttttttacataacaTGGCATGACATGACAGCATTCTT
TGGTTTATGATTAGATTTGAGTTTTTTCAACGAGAGGCAGCAGTTACACC
CAAACTGTAGCAAATAATGTTTAGCAGTAGCACAGTTTTTCGGATTTTAT
GGAGCTGCTGAGAtggatattattattttttactagTTGTGATAACGAAT
AAATGTGGTtcacgcaatgtttacattctgCTAGTGCCACAGTCGGAGGT
GACCAGAAGGCTCTTCATCCACCAGAAGGCTCATTCTTTCTCCCTAGACT
GCTTTTCTTATCCTTGATTCTTCTCTCAATTGCTTAGAAGGTATCAAGTA
TCATTTACACAATTTACTAATGGACTAATAGATACGAAGTCTTTGGTGTG
ACCCGACTGAGGATTAAACTTTGTGCACCGTAGCTACGTTCATTTTATCA
GCGTTTGATGTTCTGTAGATTTAAAACATAAGACAAGAGAGCTGAGAAAA
GTAAAGTTATAAAAAGGTTGGACTTGGGGATGGCGGAAACCATGATAAAC
GAGAGAATCAAAAAGATGAGAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_500:21939..22763

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069493 ID=TCONS_00069493|Name=TCONS_00069493|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at scaffold_500:21939..22763 (Clytia hemisphaerica)
CTCTTCTCATCTTTTTGATTCTCTCGTTTATCATGGTTTCCGCCATCCCC
AAGTCCAACCTTTTTATAACTTTACTTTTCTCAGCTCTCTTGTCTTATGT
TTTAAATCTACAGAACATCAAACGCTGATAAAATGAACGTAGCTACGGTG
CACAAAGTTTAATCCTCAGTCGGGTCACACCAAAGACTTCGTATCTATTA
GTCCATTAGTAAATTGTGTAAATGATACTTGATACCTTCTAAGCAATTGA
GAGAAGAATCAAGGATAAGAAAAGCAGTCTAGGGAGAAAGAATGAGCCTT
CTGGTGGATGAAGAGCCTTCTGGTCACCTCCGACTGTGGCACTAGcagaa
tgtaaacattgcgtgaACCACATTTATTCGTTATCACAActagtaaaaaa
taataatatccaTCTCAGCAGCTCCATAAAATCCGAAAAACTGTGCTACT
GCTAAACATTATTTGCTACAGTTTGGGTGTAACTGCTGCCTCTCGTTGAA
AAAACTCAAATCTAATCATAAACCAAAGAATGCTGTCATGTCATGCCAtg
ttatgtaaaaaaaattcccttAAAAAAAGACGGAGGAGGAAAGCTAGGGC
CTCATTTTCCATAATCTATCCCTTCTTGATCGCATAAAACAGAATcatca
aacaaaaaaagaaagttgtaagatctaaaaaaacattttttaagaaagag
agagaaagagaggaCTGAACGCGAACAAAATAGTTGATGTTCGAGTTTAT
CTCAGTTGCTGATCACGTTAATAGACGGACATTTAGGTGATTAGTCTTGC
TAATACTTTGCTTATTTTCGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043315XLOC_043315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069493-exon-scaffold_500-1491911889:21939..22763TCONS_00069493-exon-scaffold_500-1491911889:21939..22763Clytia hemisphaericaexon
TCONS_00069493-exon-scaffold_500-1510915933:21939..22763TCONS_00069493-exon-scaffold_500-1510915933:21939..22763Clytia hemisphaericaexon
TCONS_00069493-exon-scaffold_500-1575043694:21939..22763TCONS_00069493-exon-scaffold_500-1575043694:21939..22763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_500supercontigscaffold_500:21939..22763 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0693208	0.0970663	0	0	0.115071	0.0766076	0	0	0	0	0.0443149	0	0.128132	0.0556849	0.0814834	0	0.0600362	0.123672	0.055187	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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