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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069480 ID=TCONS_00069480|Name=TCONS_00069480|organism=Clytia hemisphaerica|type=transcript|length=1184bp
aaactttagataagaacatgataagaagAACGACTTGATGCTAAAAGTGC
GAAGAATACTTGACAGACGAGCAGCTTCCTCTTATAGAAAAGGATTCATG
ATCCGATGAAACATGATTGATTCTTCCGAGAACTTTTATTACTTGTGCTC
TACGGAGAAGCTCATTATTGATAAACTATTAGTGTGgtTAATTCAGATAA
CGTTCAAAATAATACGAAATGCCACGAGATTGTGGATACTGTCCGCAGAA
AGTTTCTGGTTGTTATCGTGGACACTTAGATTCTAACCATCAAAGAAAGT
TTGTTTGTGGTTACGAAGCTTGTTTCAGCAAACATACACAATTTCGTGGT
AAAGATGATCTTGAGAAACATCAAAATGAAACCAAGAAACATCTCCCAAA
CAACTCCGGTGTGAAGATCCAAATTTGTAATAGTTGTTCAAAAAGGTTCA
CCAGTGATCAAGCCATACAGCAACATCACAAAGATAAACATGGGCCCGAT
GCTAAACCTACAATCAAtccaaaaaacaaagaaaaagcttcatcaaaaaa
tttgagtGAAGCCACCGTACGTCAGCTGACTACACCCGATATGAGTGAAT
TTAAAGAATACAAACAAAATGTACCGAAAATTGTCCCTTTTGGTCAAAAC
CATGAACCAAACAAACATCAGAACTCTCCAACTCTTGTGGAAGCCCAATC
GAAACTGCACGAGTATTACAAGACAGTTCAACCAACAAAAGAAGATCGaa
taaaatcaagaaatttgatCAGAGATGAAATTCTCAAACCTTTACTTAAA
GGTGTCAATAAAGATAAAGAGAATTTATACAATGGACCCCTGGAAAAAGT
AGGAAGTGCAGCGACCAACACAAAAGTCAACAAAGCAGATGAATTTGACT
TTGATCTTCACTTAAACATCAAAGATATTGAATTGGACGAGTCGAACATC
GGCTACACACTAACTACAAGGACAGGTATTGATCCCAACGTTAAAAGCAT
GAAAGAGCAGAAAATTGTATCTACTACTGATGGTAGACTTTTACCTCATG
ACTATATTCAAATCACATCAACTTCAGCTCCCGACAGATTGAAACAAGGC
GATCATTTAGTACCAAGGCTTATTCACGAAGATTTGTTCAAAAAGCTTAA
AGAACAAATAGAAATCTCAAAGGTTAAAGgtgtg Run BLAST on NCBI protein sequence of TCONS_00069480-protein >TCONS_00069480-protein ID=TCONS_00069480-protein|Name=TCONS_00069480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MPRDCGYCPQKVSGCYRGHLDSNHQRKFVCGYEACFSKHTQFRGKDDLEK
HQNETKKHLPNNSGVKIQICNSCSKRFTSDQAIQQHHKDKHGPDAKPTIN
PKNKEKASSKNLSEATVRQLTTPDMSEFKEYKQNVPKIVPFGQNHEPNKH
QNSPTLVEAQSKLHEYYKTVQPTKEDRIKSRNLIRDEILKPLLKGVNKDK
ENLYNGPLEKVGSAATNTKVNKADEFDFDLHLNIKDIELDESNIGYTLTT
RTGIDPNVKSMKEQKIVSTTDGRLLPHDYIQITSTSAPDRLKQGDHLVPR
LIHEDLFKKLKEQIEISKVKGV Run BLAST on NCBI transcript from alignment at scaffold_500:110271..114137+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069480 ID=TCONS_00069480|Name=TCONS_00069480|organism=Clytia hemisphaerica|type=transcript|length=3867bp|location=Sequence derived from alignment at scaffold_500:110271..114137+ (Clytia hemisphaerica)
aaactttagataagaacatgataagaagAACGACTTGATGCTAAAAGTGC
GAAGAATACTTGACAGACGAGCAGCTTCCTCTTATAGAAAAGGATTCATG
ATCCGATGAAACATGATTGATTCTTCCGAGAACTTTTATTACTTGTGCTC
TACGGAGAAGCTCATTATTGATAAACTATTAGTGTGGTAAGTGCTCTGGT
TTACatttaatactttaatggaaGCTTTCTACGGTCAAAGAGGATAGGAA
CAATGTTGTTTTGTTGCTTTGCTGCATCATGAATTTTTTCTCTCCAATTT
gcttttgttaaaaaaagcttttaagTGGTACACTAAGGCTTGTTGTGTTT
GCCAGTTCTTAAATGCATGcttcaaaaacaacaaattatacACCGCTGTA
AAGAAAATTTAGAGCACTATGAtggtttttgagaaaaattattctaaaat
atttgaaaatgtagatgaaaaatgaagaagaaataaTGAACCCTTTATTC
TAGAAACATTTTTGCTATAGAGCTAACTTTAAAGCTTTCTGATTTAAGAT
ATACCAATTATTTTTCACATGAGATTATTGCATGGAAAGTTATATATTAT
AATAGGTCTTAGAAGGTTACGGGGTTTTTCGACTCCAACGAGCTACCATC
TAGATGCTGTAACCTTCGATGTAAGAACTTTAAGGGAAAAATAACTGGAT
GCTCCCGGGGATACTAACCTTGCCGACCGACAGGGATGTGTCGCTGAACt
tcaaaaaatggaccctatgtatgggaacaaaatttcaaaattttctcaaa
aatgtccatatttttttaaattcccaaaaaaaGGTACCTCTACAGTGGCC
TGAATTATATTTTCAATGTGGTATATATTCGTTAGAAAGCATTGATACAA
AAATGGCAAGCTAAACAAGCTTTAGTTCATAGTTCatagtgaatgtaatt
taattaaaatttggGATAGGCTTCAGGGGGTACTCAATTCCGCCCACTAT
CGCGGTGGTTCGACGAAAATTGAGGCAAAGTGGGGAGGCAATTCTCTAAA
GTTGAGATTTTGGCGCCTGCTAATATAACTAAGAAATGTTTGTAAAACTT
TACTTTATGAAAGGTTTTAggcattttttctatttttggctgaaaactgc
TGATTGGTGTAAAAAAGCGCTGAATTTAAATTTACTGCTCCCACCATATA
TATTTCGTCGATTTCTCCCCCAATTGCCGTCGTCCTAAACGATTATTTTT
gcgaggattaaattttgcagatttcaaAGAATTGGTTATCATCCGTGGAA
ATAAGTCCCAATCTGAAATAATCTCGCCAGCGAAATCAATTTTTCCGTCG
AAAATCCAGAATTTACCAAATTCGActaatgtttcagttgaatttCGTAT
ATTCCGAAATAAAACTTTTACGTCTGCAAGTATAGTCCTAATTTCTGAAC
AAAGTTCGTTGAATTCAACAGTTCCACTGTGAAACTCTCCTATTAGGCCA
GTGTTAGTTTAGTTGTTGAATGTAGTTTGATTTCAAATGCACATATTTTT
CTATATGTTTGAATACAAGACTTGTTTTTGTTCATAATTTCATACGTTAT
CCCAATGGTCAACTTTTGAAAATCGTCAACTTTTATAAACTCATTTTGGC
GTTTAGGAGTTTTTTCTGATGAAGAACGTCAGTTTGTTGGCCGATGTTTT
ACCAGGCTCTATTCGTGGGTCCCTCTCAAAAAAAAACAGTCACATAGACG
CTACGTATCTTAAGGGTTGGCCCTTCTACATTGGGTTCTTCCAGAAAACA
ATTGTACACGGGGGGTGGatgatataacaatttttagtgatttacccccc
gaacagggtgacttttggccccccggacaataggttttacccccggacaa
gcatctgctgaccccctGGACACCCCAAATTAcgcccggacagagcaaat
ttaccccccggagaaggcaaattttgatgattttttgctaccccctggac
aaaatatcctccaccccccatgtacaatttttttttggaagagcccattc
tgtgcaaaaaacatttttgtgaaTTGTATGGTacttaatatttcaatttc
aaaaacctattcaattATCTTGGGAATGGGATATCAATTGATTGAATAGA
GAatttaatcttatttcaataattttaagattttaagccAAGCTAAGATA
ACGAGTCTTAAGGATTTGATGATGATCATTATAGTTTGGAAATGCGACCT
CAGTGAGGACTCTTTTGAGTGAATTTCATCccgagtcaaaaaatattttg
aataactcgaaaaaataaaggcaagtttgattaaaaaattaaagtgaaat
TAAACCTGGGTTATCATTTCGgtagtgacgtcataatttagttAAGTTGA
CGTCAATTATGACGCTAAGCACCTAGTACGCATTATGTTTAGCATATGCC
GAGCCCCAGTttacgaaatttcaaaaatcaaaacaactgttattttaaaa
tttatcttatttaaaatatttacgTCATTATCTTGCTTGCTGCCTTATTG
TATTGTTTACACACCTtgtaaaaaaacctttttgactttttaggtTAATT
CAGATAACGTTCAAAATAATACGAAATGCCACGAGATTGTGGATACTGTC
CGCAGAAAGTTTCTGGTTGTTATCGTGGACACTTAGATTCTAACCATCAA
AGAAAGTTTGTTTGTGGTTACGAAGCTTGTTTCAGCAAACATACACAATT
TCGTGGTAAAGATGATCTTGAGAAACATCAAAATGAAACCAAGAAACATC
TCCCAAACAACTCCGGTGTGAAGATCCAAATTTGTAATAGTTGTTCAAAA
AGGTTCACCAGTGATCAAGCCATACAGCAACATCACAAAGATAAACATGG
GCCCGATGCTAAACCTACAATCAAtccaaaaaacaaagaaaaagcttcat
caaaaaatttgagtGAAGCCACCGTACGTCAGCTGACTACACCCGATATG
AGTGAATTTAAAGAATACAAACAAAATGTACCGAAAATTGTCCCTTTTGG
TCAAAACCATGAACCAAACAAACATCAGAACTCTCCAACTCTTGTGGAAG
CCCAATCGAAACTGCACGAGTATTACAAGACAGTTCAACCAACAAAAGAA
GATCGaataaaatcaagaaatttgatCAGAGATGAAATTCTCAAACCTTT
ACTTAAAGGTGTCAATAAAGATAAAGAGAATTTATACAATGGACCCCTGG
AAAAAGTAGGAAGTGCAGCGACCAACACAAAAGTCAACAAAGCAGATGAA
TTTGACTTTGATCTTCACTTAAACATCAAAGATATTGAATTGGACGAGTC
GAACATCGGCTACACACTAACTACAAGGGTAATataatacacgcttttct
tataagaataacttctataaaaatatcagggtgagatttcggagtTAAAA
Cggcaataggcctattgtttagaacaatagaaaaataggaataatgctca
ccctcagtactttgacaatattttcgaaattcaagATTTCGGCTCGGGCA
TACacccgtcatctcgcaaacctagtactccCCCAGAATTCATTcaagaa
taaaataaataacGGTTTTACTTAAAATATCTACACAACCCTTGTTATTT
ATAGACAGGTATTGATCCCAACGTTAAAAGCATGAAAGAGCAGAAAATTG
TATCTACTACTGATGGTAGACTTTTACCTCATGACTATATTCAAATCACA
TCAACTTCAGCTCCCGACAGATTGAAACAAGGCGATCATTTAGTACCAAG
GCTTATTCACGAAGATTTGTTCAAAAAGCTTAAAGAACAAATAGAAATCT
CAAAGGTTAAAGgtgtg Coding sequence (CDS) from alignment at scaffold_500:110271..114137+ >TCONS_00069480 ID=TCONS_00069480|Name=TCONS_00069480|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_500:110271..114137+ (Clytia hemisphaerica)
ATGCCACGAGATTGTGGATACTGTCCGCAGAAAGTTTCTGGTTGTTATCG
TGGACACTTAGATTCTAACCATCAAAGAAAGTTTGTTTGTGGTTACGAAG
CTTGTTTCAGCAAACATACACAATTTCGTGGTAAAGATGATCTTGAGAAA
CATCAAAATGAAACCAAGAAACATCTCCCAAACAACTCCGGTGTGAAGAT
CCAAATTTGTAATAGTTGTTCAAAAAGGTTCACCAGTGATCAAGCCATAC
AGCAACATCACAAAGATAAACATGGGCCCGATGCTAAACCTACAATCAAt
ccaaaaaacaaagaaaaagcttcatcaaaaaatttgagtGAAGCCACCGT
ACGTCAGCTGACTACACCCGATATGAGTGAATTTAAAGAATACAAACAAA
ATGTACCGAAAATTGTCCCTTTTGGTCAAAACCATGAACCAAACAAACAT
CAGAACTCTCCAACTCTTGTGGAAGCCCAATCGAAACTGCACGAGTATTA
CAAGACAGTTCAACCAACAAAAGAAGATCGaataaaatcaagaaatttga
tCAGAGATGAAATTCTCAAACCTTTACTTAAAGGTGTCAATAAAGATAAA
GAGAATTTATACAATGGACCCCTGGAAAAAGTAGGAAGTGCAGCGACCAA
CACAAAAGTCAACAAAGCAGATGAATTTGACTTTGATCTTCACTTAAACA
TCAAAGATATTGAATTGGACGAGTCGAACATCGGCTACACACTAACTACA
AGGACAGGTATTGATCCCAACGTTAAAAGCATGAAAGAGCAGAAAATTGT
ATCTACTACTGATGGTAGACTTTTACCTCATGACTATATTCAAATCACAT
CAACTTCAGCTCCCGACAGATTGAAACAAGGCGATCATTTAGTACCAAGG
CTTATTCACGAAGATTTGTTCAAAAAGCTTAAAGAACAAATAGAAATCTC
AAAGGTTAAAGgtgtgATGCCACGAGATTGTGGATACTGTCCGCAGAAAG
TTTCTGGTTGTTATCGTGGACACTTAGATTCTAACCATCAAAGAAAGTTT
GTTTGTGGTTACGAAGCTTGTTTCAGCAAACATACACAATTTCGTGGTAA
AGATGATCTTGAGAAACATCAAAATGAAACCAAGAAACATCTCCCAAACA
ACTCCGGTGTGAAGATCCAAATTTGTAATAGTTGTTCAAAAAGGTTCACC
AGTGATCAAGCCATACAGCAACATCACAAAGATAAACATGGGCCCGATGC
TAAACCTACAATCAAtccaaaaaacaaagaaaaagcttcatcaaaaaatt
tgagtGAAGCCACCGTACGTCAGCTGACTACACCCGATATGAGTGAATTT
AAAGAATACAAACAAAATGTACCGAAAATTGTCCCTTTTGGTCAAAACCA
TGAACCAAACAAACATCAGAACTCTCCAACTCTTGTGGAAGCCCAATCGA
AACTGCACGAGTATTACAAGACAGTTCAACCAACAAAAGAAGATCGaata
aaatcaagaaatttgatCAGAGATGAAATTCTCAAACCTTTACTTAAAGG
TGTCAATAAAGATAAAGAGAATTTATACAATGGACCCCTGGAAAAAGTAG
GAAGTGCAGCGACCAACACAAAAGTCAACAAAGCAGATGAATTTGACTTT
GATCTTCACTTAAACATCAAAGATATTGAATTGGACGAGTCGAACATCGG
CTACACACTAACTACAAGGACAGGTATTGATCCCAACGTTAAAAGCATGA
AAGAGCAGAAAATTGTATCTACTACTGATGGTAGACTTTTACCTCATGAC
TATATTCAAATCACATCAACTTCAGCTCCCGACAGATTGAAACAAGGCGA
TCATTTAGTACCAAGGCTTATTCACGAAGATTTGTTCAAAAAGCTTAAAG
AACAAATAGAAATCTCAAAGGTTAAAGgtgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069480-exon-scaffold_500-1491911889:110271..110456 | TCONS_00069480-exon-scaffold_500-1491911889:110271..110456 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1510915933:110271..110456 | TCONS_00069480-exon-scaffold_500-1510915933:110271..110456 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1575043694:110271..110456 | TCONS_00069480-exon-scaffold_500-1575043694:110271..110456 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1491911889:112864..113648 | TCONS_00069480-exon-scaffold_500-1491911889:112864..113648 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1510915933:112864..113648 | TCONS_00069480-exon-scaffold_500-1510915933:112864..113648 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1575043694:112864..113648 | TCONS_00069480-exon-scaffold_500-1575043694:112864..113648 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1491911889:113925..114137 | TCONS_00069480-exon-scaffold_500-1491911889:113925..114137 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1510915933:113925..114137 | TCONS_00069480-exon-scaffold_500-1510915933:113925..114137 | Clytia hemisphaerica | exon |
| TCONS_00069480-exon-scaffold_500-1575043694:113925..114137 | TCONS_00069480-exon-scaffold_500-1575043694:113925..114137 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:110271..114137 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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