|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069481 ID=TCONS_00069481|Name=TCONS_00069481|organism=Clytia hemisphaerica|type=transcript|length=1007bp
NCCTCATGGTCCTGCGATCACATTGACATATCACAAGCCAGGCGACCACC
ACATCGACATTGACCTCTCACCATCTCTATTCACCAACGACATCAAAGTT
GATGAGGGAGTATGGGGGCGGAGTTTCTTTAAAGATAATCCTAGAGGAGT
TGACTTGGTTGACAAGTTGAAAGAAGTACCTGTGCTGCTTGTTCCGAAAA
AGGAAGACTGTTGGTTgatttcacatgaaaaaatcaTGAAGAAAATGTTC
AACAGTGTTGATGGTCCTGGCACATGTCGCAAAGAATGTCACAAAACATT
GAAAGCTGATGTTTTAAATTGGAAATCCAAAGAACAATTTGAAGGAATGT
CTACCAACCCAATAAAGCACCACCTTTTGTGGTATAATGACCAACATCCA
GATGATGAATATTGGTCATCAAAGAATTTACCCATTTGCTACAATGACAT
GCTTGAAGATTTAGAGGGTAGGATGCGCGATGGAAAAATCCCCAATTATT
TTGACGACAAAGACAAAACCAATTTATTGGAAGGGAAAGATCCCGAAATG
TTGAACCGTTTCGCTGACCGTCTTCGGGATCGCAGAGCTGAGGTCAAAAG
ACTTGAGAATGGTGGAATGGAAACTTGAAAACATGAACCAGGGAAAgcga
tttaatttttgtagataAAAACCTAATGCAGCACAGTTTTATAACATAAA
AACACTGCTGAAAGATGAAGTATACACATGTCAATCCTGAGCCGCCAACC
TGCATCTATGCTTCCCTTTCTTCAGAGTTCACTTTCAAAATTAGTATCTT
TGTAAAACACAAAACTCTTTGGGCCCTTACGTACCCACTGAAATTCCCAA
CAAATTTGCCTCCAATGAGAAAAATACCCTGATATTTTGGAAGGATACTG
TCAactctagcctggatatccaggctgtaaactatttcacagtctagttt
tttatatgttctggtttacagctaCAGCCTAgtctccctagagcgttttA
CATTCTC Run BLAST on NCBI protein sequence of TCONS_00069481-protein >TCONS_00069481-protein ID=TCONS_00069481-protein|Name=TCONS_00069481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
PHGPAITLTYHKPGDHHIDIDLSPSLFTNDIKVDEGVWGRSFFKDNPRGV
DLVDKLKEVPVLLVPKKEDCWLISHEKIMKKMFNSVDGPGTCRKECHKTL
KADVLNWKSKEQFEGMSTNPIKHHLLWYNDQHPDDEYWSSKNLPICYNDM
LEDLEGRMRDGKIPNYFDDKDKTNLLEGKDPEMLNRFADRLRDRRAEVKR
LENGGMET Run BLAST on NCBI transcript from alignment at scaffold_500:115693..117747+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069481 ID=TCONS_00069481|Name=TCONS_00069481|organism=Clytia hemisphaerica|type=transcript|length=2055bp|location=Sequence derived from alignment at scaffold_500:115693..117747+ (Clytia hemisphaerica)
NCCTCATGGTCCTGCGATCACATTGACATATCACAAGCCAGGCGACCACC
ACATCGACATTGACCTCTCACCATCTCTATTCACCAACGACATCAAAGTT
GATGAGGGAGTATGGGGGCGGAGTTTCTTTAAAGATAATCCTAGAGGAGT
TGACTTGGTTGACAAGTTGAAAGAAGTACCTGTGCTGCTTGTTCCGAAAA
AGGAAGACTGTTGGTTgatttcacatgaaaaaatcaTGAAGAAAATGTTC
AACAGTGTTGATGGTCCTGGCACATGTCGCAAAGAATGTCACAAAACATT
GAAAGCTGATGTTTTAAATTGGAAATCCAAAGAACAATTTGAAGGAATGT
CTACCAACCCAATAAAGGTTTGTAGTTATTTGTTCTCTCAAACGGCATTT
GATGAGTACACTTTTTATAGGCAACCGGGTTGCTAAGGCTCAAGCGCTCA
AATTAACCAACTATTTCCCACTATCTTGTAcagtaaaagttttttagata
atctaactaTGGCAAACGACGGCTCTTGGCCTAATGAGCATAAATATGGC
ATAATGTGAAGttctttccattttcaaaaaagagttCGATGTATGAATAT
GTCTAAGGGTGGGGTGGGGTTTCATGGTTGACGTTTTTCgaacggagtgg
cggaatttgacGAAAATTCGACGAAAATTCAGACTGAATTTCGGAAATTG
GGCTGTCTATCGGTACGAAAAATTGGACAGTTTTTGTGCGGAAAAACGAA
ATTTAGCAAAAGAAATTTCCGGAATCTTGGGACTAGCAAaaaatacctta
ttggtattatatttcgcgtgttgccaaatttcgcgatttgcgaaattttt
aCGGGGAAACCTTTTTCGCGTGTACTAAATTTCACGAATGCcagtttttg
gaaattttcgcgtgtattggagatttcgcgattcactagtCGAAATTCgc
ggaatttttgacaaaaagttttttcaaaggaatttcGGTGAAAGAATCTA
GGTCCTCTTTTAGACGGCAATTGGTGAAAAGAtgacggaattgcggaatc
gggtacccccttaAAACCCCCCACTTCTAACCTGATTTATAGTAcagata
aaaatttgaaaaatcctgtttaacaaaaaaaaagttaacaaaatttttga
ggcTCAGCATTAATCTTAatatattcttgaacttttgcacaTTTGAGCAA
TTTGCACATTTGAGCGACGCCGTATGTTGCGCGACCCGTTTGATCACTTT
ATTAAAAGTAACATTTtcctaaaacaaagaaaacgttAGATTCGATTCCT
TGTTCGAAATCCTTCGTAAATCTTAAAGACAACGTTATCTCTTGCATATG
GGAAAGATAGAAGATTGCTTTATTCATCTTCAGCTCATAACTCATTTCTA
CATATTCGATTTTAGCACCACCTTTTGTGGTATAATGACCAACATCCAGA
TGATGAATATTGGTCATCAAAGAATTTACCCATTTGCTACAATGACATGC
TTGAAGATTTAGAGGGTAGGATGCGCGATGGAAAAATCCCCAATTATTTT
GACGACAAAGACAAAACCAATTTATTGGAAGGGAAAGATCCCGAAATGTT
GAACCGTTTCGCTGACCGTCTTCGGGATCGCAGAGCTGAGGTCAAAAGAC
TTGAGAATGGTGGAATGGAAACTTGAAAACATGAACCAGGGAAAgcgatt
taatttttgtagataAAAACCTAATGCAGCACAGTTTTATAACATAAAAA
CACTGCTGAAAGATGAAGTATACACATGTCAATCCTGAGCCGCCAACCTG
CATCTATGCTTCCCTTTCTTCAGAGTTCACTTTCAAAATTAGTATCTTTG
TAAAACACAAAACTCTTTGGGCCCTTACGTACCCACTGAAATTCCCAACA
AATTTGCCTCCAATGAGAAAAATACCCTGATATTTTGGAAGGATACTGTC
Aactctagcctggatatccaggctgtaaactatttcacagtctagttttt
tatatgttctggtttacagctaCAGCCTAgtctccctagagcgttttACA
TTCTC Coding sequence (CDS) from alignment at scaffold_500:115693..117747+ >TCONS_00069481 ID=TCONS_00069481|Name=TCONS_00069481|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_500:115693..117747+ (Clytia hemisphaerica)
CCTCATGGTCCTGCGATCACATTGACATATCACAAGCCAGGCGACCACCA
CATCGACATTGACCTCTCACCATCTCTATTCACCAACGACATCAAAGTTG
ATGAGGGAGTATGGGGGCGGAGTTTCTTTAAAGATAATCCTAGAGGAGTT
GACTTGGTTGACAAGTTGAAAGAAGTACCTGTGCTGCTTGTTCCGAAAAA
GGAAGACTGTTGGTTgatttcacatgaaaaaatcaTGAAGAAAATGTTCA
ACAGTGTTGATGGTCCTGGCACATGTCGCAAAGAATGTCACAAAACATTG
AAAGCTGATGTTTTAAATTGGAAATCCAAAGAACAATTTGAAGGAATGTC
TACCAACCCAATAAAGCACCACCTTTTGTGGTATAATGACCAACATCCAG
ATGATGAATATTGGTCATCAAAGAATTTACCCATTTGCTACAATGACATG
CTTGAAGATTTAGAGGGTAGGATGCGCGATGGAAAAATCCCCAATTATTT
TGACGACAAAGACAAAACCAATTTATTGGAAGGGAAAGATCCCGAAATGT
TGAACCGTTTCGCTGACCGTCTTCGGGATCGCAGAGCTGAGGTCAAAAGA
CTTGAGAATGGTGGAATGGAAACTTGACCTCATGGTCCTGCGATCACATT
GACATATCACAAGCCAGGCGACCACCACATCGACATTGACCTCTCACCAT
CTCTATTCACCAACGACATCAAAGTTGATGAGGGAGTATGGGGGCGGAGT
TTCTTTAAAGATAATCCTAGAGGAGTTGACTTGGTTGACAAGTTGAAAGA
AGTACCTGTGCTGCTTGTTCCGAAAAAGGAAGACTGTTGGTTgatttcac
atgaaaaaatcaTGAAGAAAATGTTCAACAGTGTTGATGGTCCTGGCACA
TGTCGCAAAGAATGTCACAAAACATTGAAAGCTGATGTTTTAAATTGGAA
ATCCAAAGAACAATTTGAAGGAATGTCTACCAACCCAATAAAGCACCACC
TTTTGTGGTATAATGACCAACATCCAGATGATGAATATTGGTCATCAAAG
AATTTACCCATTTGCTACAATGACATGCTTGAAGATTTAGAGGGTAGGAT
GCGCGATGGAAAAATCCCCAATTATTTTGACGACAAAGACAAAACCAATT
TATTGGAAGGGAAAGATCCCGAAATGTTGAACCGTTTCGCTGACCGTCTT
CGGGATCGCAGAGCTGAGGTCAAAAGACTTGAGAATGGTGGAATGGAAAC
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069481-exon-scaffold_500-1491911889:115693..116059 | TCONS_00069481-exon-scaffold_500-1491911889:115693..116059 | Clytia hemisphaerica | exon |
| TCONS_00069481-exon-scaffold_500-1510915933:115693..116059 | TCONS_00069481-exon-scaffold_500-1510915933:115693..116059 | Clytia hemisphaerica | exon |
| TCONS_00069481-exon-scaffold_500-1575043694:115693..116059 | TCONS_00069481-exon-scaffold_500-1575043694:115693..116059 | Clytia hemisphaerica | exon |
| TCONS_00069481-exon-scaffold_500-1491911889:117108..117747 | TCONS_00069481-exon-scaffold_500-1491911889:117108..117747 | Clytia hemisphaerica | exon |
| TCONS_00069481-exon-scaffold_500-1510915933:117108..117747 | TCONS_00069481-exon-scaffold_500-1510915933:117108..117747 | Clytia hemisphaerica | exon |
| TCONS_00069481-exon-scaffold_500-1575043694:117108..117747 | TCONS_00069481-exon-scaffold_500-1575043694:117108..117747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:115693..117747 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
|
