TCONS_00069575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069575
Unique NameTCONS_00069575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069575 ID=TCONS_00069575|Name=TCONS_00069575|organism=Clytia hemisphaerica|type=transcript|length=2569bp
tacaATGCAAGTTATATCACTTTATTCCCAATGTCTGGACACTCTTGTCA
AGTGCTTTTACTCCAAAGAAGATTGCAAGATTGTTTTGGAAACACTTAGT
GCATCAGGAATTGTTCAAGTGTTTACAAGCAGATTTATTGGACATCTCAT
AGAATGGGATTCTTTGTTAGTTACTGATCAAGTTGTCGATACTGTTTCAA
GTTCTGGTTTACGCAGTTTTGGCCTCAATGGATGCACAAAGGTTACTGCA
GAATGTGTTTCAAAGCTTTTGAACAGATGCCAAAACATTTACAACCTTGA
CATCTCAAATTGTGATCAATTGCTTGAGCCAGAGTTCTTTGACTGTCTCT
ttattcagaatttgaagaaattgaaaatcaatGGATGCAATAGACTAAAT
GGTTCTATGTTTGAGaaaatcatcAGTCAATGTCCTACTCTGGAGAATCT
CTCACTAGACGAATGTTGTAACTTGGGTGGCTTTTCTTCAACGTGTTTAC
GATTTCAAACTTTTGGCTCTTCCCTGACCTCTATTTCCATGTCCGGATGT
AAATCGGTTGATAATAAATTCGTCAGGAACTTGTGTAGTGTTACTAGGTC
AAATTTAAAATGGCTGGACATTTCGTATACCTCAGCTGATTGCCTCGCAT
TAATCTACCTTGCAGGGTTTACTTTGAAAATGGCTTGCCAAATTACTAAT
CTTAAAGAATTAGGAGGTACCATTCTTAGAGATGTTGAGCTCAACGAAGA
ACTAAATGATTTATTTGAGTACGATCAAAATATGAAGTGTGCTAGTCCTG
AAATAAAATGTAAAGATTGTCTTGAAAGACAAAGAGAAGCAACATTACTT
GAGGACTATTATAAAATAGGGAATATTATTCCATGTAATTCTAAAACTAA
TTATGAAGATTGGGATGTCATTTCTTTATCACaagaagaaaatcttttgt
caTGCACCTGTAAGGACCTTCAGCAGAACAAGATGACAACAATACCTATT
GATCCAGGTTTAGAAAAGGGGCAGCTGTTTGAACCGAAATTGATATACTT
GGATATAAACAATCTTGAATTTTATTACAATGAATTTGGGCGCAAGTGCC
TGGAATTGTTTATGGACTCCAATAAATGTCTTGAACATTTCTTCATTTCT
TGGAATAATCTTGATAATGAAATGTTAAAATGTATTTCGAAGAATGATAT
TAACCTAAAAACATTTCATCTGATCGTGCAATCATCCAGTTgattcaaaa
caatcaaaatataAGGAAACTTGGACTTTCAGAAGCATCGATATCAGATG
AAGTTGTTCATTTTATTACTGATTTATTAAGCGAAAAGCTCGAATTGATA
GATTTGTCTTGGTGTGAAAACATAACCAATGCTGCTACTATCAATCTGAT
TACAAAATGTACTAAATTGGATTGTGTGAACTTGCGACAGGGTCAAGTTT
CTTCATCTACGGTTGAAGCTATTGGAAAATATCAAACAAATCTTTCTTCC
ATTGGACTAAGTGGTTTGAAAGGACTCCATCAAGACTTGGCTTCTCAGAA
CCCTTCTTTATTACACCTTACATCTCTTCAAAAATTGACATCAATAGATC
TTAGTTGGAATTGTATGGTTTCAGATGACACAATTATAGCCCTCTTCGGT
AACATGCCAGTACTTGAAGAAGCAGTTCTGATCGGCTTAAAATGTCTTAG
TTCCAACCCATTCCTACCAATGATCTATAATTACAAAGAATGGTACAGAT
TGAAAACAGACATAACGAAGAAGATATTGGCTGAAAAATCTGACTTGGAA
GAAAGTGAGAAAAAATTGCTCAggaaaaatatacataaacACCAGTTCAT
CGAAGCAGATTTTCATGTACCTTTCCGATCCAAAGTGTATCAGCCAAGAC
TAAAGAACCTTTCTTTAAGCTACTGCGACAAAGTAGACGATGACCAGCTA
TCTGACATTGTCTCGGTATGTAGAGGAACCTTGGTTATAACAGGCTATTT
TGGAGAAGCTATCGAGCCAAAATGGAGGTATGATCAATATGTTGAGACCT
TTATTGTTAATTAACCATAATATTAGCACAAGCTTTTTTATCTTCCCTGC
TGATTTTAACTCAACCAACTCACATATGCATCGTATTGGTTGAAATTCAC
ACCTGGTTCACAAGGTATTTTAACTATTTTTAAATAAACTTTatactttt
taaagttttaattaTATCACAGCACTCAAAAAGGGAAGCAGAGACACTTT
CCCCCTAGCATGACTTTCTGATTTGTGCTTTCATGCTTTTAGAACAAATC
ACACCTAAAAAGCGTAAATGGTCCAGTATTATTTATAATGAGTGAGCATG
AGTGAGATCTGAGCGATGTTTATTTCATCAAATTGATAATTGAACTttgc
ttaaccctttaagtgccaatgtcgagtTTATtggacatgggctatatagg
agggcgtcctgtaatgcccagtttgagttagaaatcgtcattttttgtcG
AACTCGTAGAATTGGATTGTGTTTAATGGTTAAGCGAACAAAAGTgtgtc
tttccagcgagattttgag
Run BLAST on NCBI

transcript from alignment at scaffold_502:101278..106888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069575 ID=TCONS_00069575|Name=TCONS_00069575|organism=Clytia hemisphaerica|type=transcript|length=5611bp|location=Sequence derived from alignment at scaffold_502:101278..106888- (Clytia hemisphaerica)
TACAATGCAAGTTATATCACTTTATTCCCAATGTCTGGACACTCTTGTCA
AGTGCTTTTACTCCAAAGAAGATTGCAAGATTGTTTTGGAAACACTTAGT
GCATCAGGAATTGTTCAAGTGTTTACAAGCAGATTTATTGGACATCTCAT
AGAATGGGATTCTTTGTTAGTTACTGATCAAGTTGTCGATACTGTTTCAA
GTTCTGGTTTACGCAGTTTTGGCCTCAATGGATGCACAAAGGTTACTGCA
GAATGTGTTTCAAAGCTTTTGAACAGGTGAATATGTTCATTATTTATAAA
ATTTCTTGATTTATCTAATTTGATTGACACCTTGTATTTTCCTTCTTTAT
AAAAACTTAATAAGGACCTGAAAAAATCATTGAGACTAATACAGTAGGCA
ATATTTTGTGTTTCAATTATGCTGATTACACGGGGCATTTGAAATTAATT
TAACGTCAAGTTGTTTTGATTCTAACAAAAATAGCACTTTGGTTCTTATT
CTCACTCTTTTCTTTTCAGATGCCAAAACATTTACAACCTTGACATCTCA
AATTGTGATCAATTGCTTGAGCCAGAGTTCTTTGACTGTCTCTTTATTCA
GAATTTGAAGAAATTGAAAATCAATGGATGCAATAGACTAAATGGTTCTA
TGTTTGAGGTGAGAAATTTGGATAAATTTCCTATAGAGGTTTGCATTTAT
ATCCCAATTAAGGTGTATTATATACGTAAATAAGTTTATGCTAATTGTTT
TTTTCCTTGAAGTATTTCACTTTCCTTTTTTAGAAAATCATCAGTCAATG
TCCTACTCTGGAGAATCTCTCACTAGACGAATGTTGTAACTTGGGTGGCT
TTTCTTCAACGTGTTTACGATTTCAAACTTTTGGCTCTTCCCTGACCTCT
ATTTCCATGTCCGGATGTAAATCGGTTGATAATAAATTCGTCAGGAACTT
GTGTAGTGTTACTAGGTCAAATTTAAAATGGCTGGACATTTCGTATACCT
CAGCTGATTGCCTCGCATTAATCTACCTTGCAGGGTTTACTTTGAAAATG
GCTTGCCAAATTACTAATCTTAAAGAATTAGGAGGTACCATTCTTAGAGA
TGTTGAGCTCAACGAAGAACTAAATGATTTATTTGAGTACGATCAAAATA
TGAAGTGTGCTAGTCCTGAAATAAAATGTAAAGATTGTCTTGAAAGACAA
AGAGAAGCAACATTACTTGAGGACTATTATAAAATAGGGAATATTATTCC
ATGTAATTCTAAAACTAATTATGAAGATTGGGATGTCATTTCTTTATCAC
AAGAAGAAAATCTTTTGTCATGCACCTGTAAGGACCTTCAGCAGAACAAG
ATGACAACAATACCTATTGATCCAGGTTTAGAAAAGGGGCAGCTGTTTGA
ACCGAAATTGATATACTTGGATATAAACAATCTTGAATTTTATTACAATG
AATTTGGGCGCAAGTGCCTGGAATTGTTTATGGACTCCAATAAATGTCTT
GAACATTTCTTCATTTCTTGGAATAATCTTGATAATGAAATGTTAAAATG
TATTTCGAAGAATGATATTAACCTAAAAACATTTCATCTGGTAAGTAATA
ACTCACTTATTTGAGATATATTTTCGGGTGCTAGTTTAGCAAGATGGAAG
GGTATGTCAGAGCCAAAGCTCCAAAATTGACCCATAGAGAGACTGAATTT
TGGAAATCTTGTCAAATTTTGGACGCTTTCGCAAACATTAAAAAATTTCC
AATTAACTTTGTTTATTGTAGGATAATTGTAGTGGCTTGATAGGTTTGAA
CTGGGATGGGTTTGGTCAATATTGTCATTCATTGGTTGATTTGAATTTGA
CTGGTGCCTCATTTTTAACAGATCGTGCAATCATCCAGTTGATTCAAAAC
AATCAAAATATAAGGAAACTTGGACTTTCAGAAGCATCGATATCAGATGA
AGTTGTTCATTTTATTACTGATTTATTAAGCGAAAAGGTACTTCCATTTG
ACGAGCTTCCTCATCTTTTAGATCTCTCAAGATTGGGATGCTGAATGTTT
GAGTTTCCCATAAATTTCAAACATTGTTGTCGCTGCTAATTTCTATTGTG
AACTTATATAAAACAGCAAACTTCAGCGATTATAGCGAAGTCCCTAATTA
GCTACCTGTTTGATTTTAGCTCGAATTGATAGATTTGTCTTGGTGTGAAA
ACATAACCAATGCTGCTACTATCAATCTGATTACAAAATGTACTAAATTG
GATTGTGTGAACTTGCGACAGGGTCAAGTTTCTTCATCTACGGTTGAAGC
TATTGGAAAATATCAAACAAATCTTTCTTCCATTGGACTAAGTGGTTTGA
AAGGTATGCTTAGATTTAAAATAGATTAAGAGCATAGAATGCACCCCCCT
GAGCTTAGGGGGGGGGGCTAAACCATTTTTGCTTGATTGGGGCTGTATTT
TTCAAAAAATACTGGGGGCTAGCTTGCTAGGGGGGGCTGAGTGTTGTGTA
ATAGAACTGGGGGCAGAGCTGATAGATTGAAGATATTTCAAATTATGTTA
AAAATCTCTGCTGTGGGAAAGGGGAAAAATCTGTGGGAAAAAATCTATCG
AGAATTTGCATGCAAAATTTCTTTGATATTTTGCTTTGTGAAGGTGGGGG
CTATGTTTCTAGAATTTAGCCGGGGGCTATTATTCTTAGCTCCCCCTGAA
AAATGCTGTGGGCTGGACCCCTCTGCACACTATGAAGAGAAAAATTGCCG
AATTTTGACACGCATCCCTCTGATATTATTTGGTTATGGGATGTTCATCG
TTTATAAAATTCCCGTCGGATTTTTCTTTCTAAACCTTTTTAAGAAAACT
GAAACAGGTTAGTCCATTTGGGTAACTCTCTGACGGGGACCTTATACACG
ATTAGCATCCCCTAAGTCAAAACATTCAGAGGGGATGCTTGCACTCTGTT
AGTCGTTCTCAGATTTATCTCTAGTAGGGGGCCAATCCTTAGGATCCGTG
ACATCTTTTATGCGACACAACCGCGTGTAGTTAGTTCGAAAGTTAGGAAG
TTTTTTAAGACTTTTTTGAGAGGGGGGCGGCGAATAAGGCCCGACAAAAG
CTTTTATGACTAAAAAGCTGACGTTTACAGGCCTTCCTACTTTCGAACTA
ACCACATGCGGTTGCGTCGCTTAAAAGGTGTCACGGATCCTAAGGATTGG
TCCCCTACTACTCATCTTGCCAATGAAGTTTAATTTAAATACAGGAATAG
TTGAATCTATTATTTCTATCTTCTGTACAGGACTCCATCAAGACTTGGCT
TCTCAGAACCCTTCTTTATTACACCTTACATCTCTTCAAAAATTGACATC
AATAGATCTTAGTTGGAATTGTATGGTTTCAGATGACACAATTATAGCCC
TCTTCGGTAACATGCCAGTACTTGAAGAAGCAGTTCTGATCGGCTTAAAA
TGTCTTAGTTCCAACCCATTCCTACCAATGATCTATAATTACAAAGAATG
GTACAGATTGAAAACAGACATAACGAAGAAGATATTGGCTGAAAAATCTG
ACTTGGAAGAAAGTGAGAAAAAATTGCTCAGGAAAAATATACATAAACAC
CAGGTTAGTAAATAAGTAGGATTATTGTCACAAGGTTGTTCTTAAAAAAA
TGTTCTCAAACCTCGAGCTTCTCTTTACCATTTTATACTAGCAGGGGAGG
TGAGGTGAACCTGAGGTACTTGACATCTTTTCTCTCTCTCTTTTCTTTCT
CTACCTGTAGATGTACTCAATTACTCTATAAGAAATACGAGAATTTTTAA
AGTCCGAAATTTCAAAATACGATTGACGTCGACAATGATAAATAAGAATA
GTTACTAAAGTGTATCCAGATATAATTTGCAGTGGAAACAAGAATGCCTG
TAACTTTTGATAGTCCGATATAATTTTTTTGCTTCTTTTAGAGAATCAAA
AGCGCTATTTTTGAATTTATTTTTTGTTGAAAAATACGTGATTTTTAGCG
GTTAAATTTGCGATTGCAAAAATTGAGCTTTTTTTCTATTTTCGCTACAA
CGTTCATTTTACACTAGTGGTAGTTCAACCTTAGGTTAAGAAAATTGTCA
AATTTCAAGGCAAACGGAAAAGTCCTTCGGAAGATATGGGACCCGAAATA
CCCCTTGGTAGCACTTTTCTGTGAAACATCAAATCTCCAAATTTTTAATA
AAAACGGGGGATTATGATGGGATGATAAAACAGTTTTTCAATCATATATT
ATAACATATTTTACGATCTTTTTACAATAATGACCTCATAGCCAAACTGT
GCTTTAATGTTTTGGGAATTAGCAAAGTTCTTTTATTACTTAAAAATAAC
AAAGGCAATATCAGTTCAATATGCTTATCGTTTCAATAAAGACAATCAAA
TTGTGTATTCACTTTGTTTCGAAATGATCAATGATACCAATAACACCAAT
GCAACAAATAACACTTTCCAACTTTTAATTGCACTGTTCAAAAAAGATAA
CCCCCGTTTTTAGTAAAAATTTGGAGATTTGATATTTCACAGAAAAGTGC
TACCAAGGGGTACTTTGGGTCCCATATCTTCCGAAGGACTTTTCCGTTTG
CCTTGAAATTTAACAACCTTCTTTACCTAAGGTTGAACTACCACTAGTGT
AAAAATGAACGTTATAGCATAAAAAGAAAAAAAGCTCAATTTTTGAAATC
GCAAATTTAATCGCTAAAAATCGCGAATTTTTCAACAAAAAAGACATTCA
AATATAGCGCTTTTGATTCTCTAACATAAACAAAAAAAAATTTTGGAATT
ATATTTGACTATTAAAAGTTACAGGCATTCTTGTTTCCGCTGCCAATTAT
ATCTGGATAGACTTTAATATAATACCTCTCTTTTTAGTTCATCGAAGCAG
ATTTTCATGTACCTTTCCGATCCAAAGTGTATCAGCCAAGACTAAAGAAC
CTTTCTTTAAGCTACTGCGACAAAGTAGACGATGACCAGCTATCTGACAT
TGTCTCGGTATGTAGAGGAACCTTGGTTATAACAGGCTATTTTGGAGAAG
CTATCGAGCCAAAATGGAGGTATGATCAATATGTTGAGACCTTTATTGTT
AATTAACCATAATATTAGCACAAGCTTTTTTATCTTCCCTGCTGATTTTA
ACTCAACCAACTCACATATGCATCGTATTGGTTGAAATTCACACCTGGTT
CACAAGGTATTTTAACTATTTTTAAATAAACTTTATACTTTTTAAAGTTT
TAATTATATCACAGCACTCAAAAAGGGAAGCAGAGACACTTTCCCCCTAG
CATGACTTTCTGATTTGTGCTTTCATGCTTTTAGAACAAATCACACCTAA
AAAGCGTAAATGGTCCAGTATTATTTATAATGAGTGAGCATGAGTGAGAT
CTGAGCGATGTTTATTTCATCAAATTGATAATTGAACTTTGCTTAACCCT
TTAAGTGCCAATGTCGAGTTTATTGGACATGGGCTATATAGGAGGGCGTC
CTGTAATGCCCAGTTTGAGTTAGAAATCGTCATTTTTTGTCGAACTCGTA
GAATTGGATTGTGTTTAATGGTTAAGCGAACAAAAGTGTGTCTTTCCAGC
GAGATTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043340XLOC_043340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069575-exon-scaffold_502-1575043694:106613..106888TCONS_00069575-exon-scaffold_502-1575043694:106613..106888Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1575043694:106231..106369TCONS_00069575-exon-scaffold_502-1575043694:106231..106369Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1575043694:105299..106105TCONS_00069575-exon-scaffold_502-1575043694:105299..106105Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1575043694:104902..105017TCONS_00069575-exon-scaffold_502-1575043694:104902..105017Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1575043694:104536..104719TCONS_00069575-exon-scaffold_502-1575043694:104536..104719Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1575043694:103286..103608TCONS_00069575-exon-scaffold_502-1575043694:103286..103608Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1575043694:101278..102001TCONS_00069575-exon-scaffold_502-1575043694:101278..102001Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:106613..106888TCONS_00069575-exon-scaffold_502-1510915933:106613..106888Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:106231..106369TCONS_00069575-exon-scaffold_502-1510915933:106231..106369Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:105299..106105TCONS_00069575-exon-scaffold_502-1510915933:105299..106105Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:104902..105017TCONS_00069575-exon-scaffold_502-1510915933:104902..105017Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:104536..104719TCONS_00069575-exon-scaffold_502-1510915933:104536..104719Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:103286..103608TCONS_00069575-exon-scaffold_502-1510915933:103286..103608Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1510915933:101278..102001TCONS_00069575-exon-scaffold_502-1510915933:101278..102001Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:106613..106888TCONS_00069575-exon-scaffold_502-1491911889:106613..106888Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:106231..106369TCONS_00069575-exon-scaffold_502-1491911889:106231..106369Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:105299..106105TCONS_00069575-exon-scaffold_502-1491911889:105299..106105Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:104902..105017TCONS_00069575-exon-scaffold_502-1491911889:104902..105017Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:104536..104719TCONS_00069575-exon-scaffold_502-1491911889:104536..104719Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:103286..103608TCONS_00069575-exon-scaffold_502-1491911889:103286..103608Clytia hemisphaericaexon
TCONS_00069575-exon-scaffold_502-1491911889:101278..102001TCONS_00069575-exon-scaffold_502-1491911889:101278..102001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:101278..106888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000201099	0.402096	0	0.0704544	0	0	0	0	0.0534558	0.137075	0.170203	0	0.135008	0.162232	0	0.0947955	0.26604	0.0958899	0.234112	0	0.404103	0.282814	0	0.290524	0.115266	0	0	0.400515	0.125897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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