TCONS_00069773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069773
Unique NameTCONS_00069773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069773 ID=TCONS_00069773|Name=TCONS_00069773|organism=Clytia hemisphaerica|type=transcript|length=936bp
GCAGTTGGAATCTGCTGAAAGGTTGTTACGTTCAGGGCCAACTGGTGGTG
GACCTTGGAAGCCAATGTGAAAACCTGTAAGGAACCCAGACACAAGAAAC
TCAACTATCTCAGGGTCATACCCGTCGAGGAACTCAAACAAGACAAGGGG
TTTAACAGGGGAAGCTGGCTTGaaggaagaagggagaaaggaaCCTATTG
GGAGGTGGAGGAGAATTTGGTGATCACTGGGGGCGGTAGGGACATTGCAT
GACAGGATGGGGATAGTTGCAGATGAGGCAACTGTGGAGATATCGANTTG
CCCATAGCGAGGGTACCATTATTAGCCGTGAGAAGGGCGTTGATAAGGGC
GGAAGAACTATTCGTGGGTGGCGTGTTGGTGGTGGGAGTTGAATCTTGTT
GACTTGACAGGCTTGACGACGTCGCAATGGTCGAGAGAAGAACGTTGTCC
TGTGATGTACTGGGCAAAACAGGGCTGGCCAATTGGCTTGAAGATGATTG
TGATGAAGCAAAAAATGAGTTCAGGCGGCTGTCGACTAATGAATTGACCA
ATGATAAAAGTTGCGTACTTTGATCAGTAACAGTAGTAATTGTGGACTGG
ACATCATTATTTTGAGTGTTAACAGGAAAGATAGGTAAGAGTTGTTCAAG
ACTGATTTGGTCAGATTCCATGGTAAAATTTTCACTGAAGCTTAACTTGC
AGATGAAGCTTAACTTGCGGATGAAGAGATAAGCTCAGGGCAAACACACC
CTTGGAATATATATACGGGAACTCAGATAACCGGCAGCCGAGAAATACCT
AATCCTAACCTTTTCCGCAACCCGATGTAACTCAGTCGACTGGGAATTAA
CCTTAGCTAAAGATTAGCTCCAACTAATGAGCGCCCCgccagcaccttga
actgactacccaattcccctcacatggcatgggttg
Run BLAST on NCBI

protein sequence of TCONS_00069773-protein

>TCONS_00069773-protein ID=TCONS_00069773-protein|Name=TCONS_00069773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MESDQISLEQLLPIFPVNTQNNDVQSTITTVTDQSTQLLSLVNSLVDSRL
NSFFASSQSSSSQLASPVLPSTSQDNVLLSTIATSSSLSSQQDSTPTTNT
PPTNSSSALINALLTANNGTLAMGXSISPQLPHLQLSPSCHAMSLPPPVI
TKFSSTSQ
Run BLAST on NCBI

transcript from alignment at scaffold_507:238..1173

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069773 ID=TCONS_00069773|Name=TCONS_00069773|organism=Clytia hemisphaerica|type=transcript|length=936bp|location=Sequence derived from alignment at scaffold_507:238..1173 (Clytia hemisphaerica)
caacccatgccatgtgaggggaattgggtagtcagttcaaggtgctggcG
GGGCGCTCATTAGTTGGAGCTAATCTTTAGCTAAGGTTAATTCCCAGTCG
ACTGAGTTACATCGGGTTGCGGAAAAGGTTAGGATTAGGTATTTCTCGGC
TGCCGGTTATCTGAGTTCCCGTATATATATTCCAAGGGTGTGTTTGCCCT
GAGCTTATCTCTTCATCCGCAAGTTAAGCTTCATCTGCAAGTTAAGCTTC
AGTGAAAATTTTACCATGGAATCTGACCAAATCAGTCTTGAACAACTCTT
ACCTATCTTTCCTGTTAACACTCAAAATAATGATGTCCAGTCCACAATTA
CTACTGTTACTGATCAAAGTACGCAACTTTTATCATTGGTCAATTCATTA
GTCGACAGCCGCCTGAACTCATTTTTTGCTTCATCACAATCATCTTCAAG
CCAATTGGCCAGCCCTGTTTTGCCCAGTACATCACAGGACAACGTTCTTC
TCTCGACCATTGCGACGTCGTCAAGCCTGTCAAGTCAACAAGATTCAACT
CCCACCACCAACACGCCACCCACGAATAGTTCTTCCGCCCTTATCAACGC
CCTTCTCACGGCTAATAATGGTACCCTCGCTATGGGCAANTCGATATCTC
CACAGTTGCCTCATCTGCAACTATCCCCATCCTGTCATGCAATGTCCCTA
CCGCCCCCAGTGATCACCAAATTCTCCTCCACCTCCCAATAGGttccttt
ctcccttcttccttCAAGCCAGCTTCCCCTGTTAAACCCCTTGTCTTGTT
TGAGTTCCTCGACGGGTATGACCCTGAGATAGTTGAGTTTCTTGTGTCTG
GGTTCCTTACAGGTTTTCACATTGGCTTCCAAGGTCCACCACCAGTTGGC
CCTGAACGTAACAACCTTTCAGCAGATTCCAACTGC

Coding sequence (CDS) from alignment at scaffold_507:238..1173

>TCONS_00069773 ID=TCONS_00069773|Name=TCONS_00069773|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_507:238..1173 (Clytia hemisphaerica)
ATGGAATCTGACCAAATCAGTCTTGAACAACTCTTACCTATCTTTCCTGT
TAACACTCAAAATAATGATGTCCAGTCCACAATTACTACTGTTACTGATC
AAAGTACGCAACTTTTATCATTGGTCAATTCATTAGTCGACAGCCGCCTG
AACTCATTTTTTGCTTCATCACAATCATCTTCAAGCCAATTGGCCAGCCC
TGTTTTGCCCAGTACATCACAGGACAACGTTCTTCTCTCGACCATTGCGA
CGTCGTCAAGCCTGTCAAGTCAACAAGATTCAACTCCCACCACCAACACG
CCACCCACGAATAGTTCTTCCGCCCTTATCAACGCCCTTCTCACGGCTAA
TAATGGTACCCTCGCTATGGGCAANTCGATATCTCCACAGTTGCCTCATC
TGCAACTATCCCCATCCTGTCATGCAATGTCCCTACCGCCCCCAGTGATC
ACCAAATTCTCCTCCACCTCCCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043447XLOC_043447Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069773-proteinTCONS_00069773-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069773-exon-scaffold_507-1491911889:238..1173TCONS_00069773-exon-scaffold_507-1491911889:238..1173Clytia hemisphaericaexon
TCONS_00069773-exon-scaffold_507-1510915933:238..1173TCONS_00069773-exon-scaffold_507-1510915933:238..1173Clytia hemisphaericaexon
TCONS_00069773-exon-scaffold_507-1575043694:238..1173TCONS_00069773-exon-scaffold_507-1575043694:238..1173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:238..1173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25498	1.71879	1.21126	1.03536	1.13753	0.875592	1.17256	1.84498	0.674155	1.93489	0.913036	0.995425	1.05503	1.05101	1.43195	1.5546	2.30225	1.57283	1.62762	1.14478	0.745124	1.4229	0.885353	0.641489	1.84806	2.84761	1.49816	1.80954	2.21528	1.86926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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