TCONS_00069771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069771
Unique NameTCONS_00069771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069771 ID=TCONS_00069771|Name=TCONS_00069771|organism=Clytia hemisphaerica|type=transcript|length=1018bp
ATTGGTGATGTAGCTGAGGATAATTCCGTGCAGGAAAGATACTTCTCTTA
CCTGGATAAACTTCAGAAGAAAAAGAATCCAAAACAAGAATCCTTGTTCA
TGTACTTAGACTTGGATTTTAAAAGTCGCAGAGAATTTTTACGAAAACTG
AAAAAGGATCGAACCCAACTTTTTGTTCGACAAATACCCAATATTTCTAA
CCAGTCACATTCAGATTATTGAGGAAGCTCACAGAGTTATTGGATCAAAC
AAAGAACCTCCACTTACATATATGCAAGGATGTGTTGACCGACTCAACAA
TAAGGTGGAGCCGATACTTTTCCAAGCAGTAGAGGAAGGCCTCTTATCTG
CTGCTACAGTGGTGAAGCACAGTAACAAACTGGCATGTCTAATTGAACAC
ATGGAAATGATATTTCCTGAAAAGAAAGGCAAAGGCAAAAAGAAAGCTCC
CGCCGCCACTCAAATTGTCTTTCAAGTTGAgGATTGTGAGGATGCAAAGC
TTACGAAACGTATCAAGTGTGATTATCTGGTCTTCTTACATGATACACAT
CATGTGTATCTTTACAAAGATGGAATTATTATTTCCAGATTTCAACTCAA
AGATTACGATCTTGCTGTTATTTCTTACATCTCATTGTTTTACGTCTTGG
ACCAATACTACCCCAATTCTCACAAGATTGGGCTAGAAGTTTTGCAACGG
TTGGTCCTCATGGATAGTGCATCCACAATCACCGAACAGACCAAAGAACG
TATTGAAAAACTAGAAAAGTTCCTAGAATGACTCTTTAAAAACATCCATT
AAAACAGGAGTGAAAACTCTTTGTGCCACTGTATAGTTATTTCTGTTTCC
AAGTCACCTTTTCTTTTGATCATATTTTAGCCTTTAGATATTGTCgcatc
aaaactaaaaagacttcacattttatcaaaaatgggCTGCTGGTGGATTC
ACATTCAAGGGGACATTCTTCAGGTCTAGAAAGCCTTATCTACCAAAATT
TGACCTCTTTTGCCTTGC
Run BLAST on NCBI

protein sequence of TCONS_00069771-protein

>TCONS_00069771-protein ID=TCONS_00069771-protein|Name=TCONS_00069771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MQGCVDRLNNKVEPILFQAVEEGLLSAATVVKHSNKLACLIEHMEMIFPE
KKGKGKKKAPAATQIVFQVEDCEDAKLTKRIKCDYLVFLHDTHHVYLYKD
GIIISRFQLKDYDLAVISYISLFYVLDQYYPNSHKIGLEVLQRLVLMDSA
STITEQTKERIEKLEKFLE
Run BLAST on NCBI

transcript from alignment at scaffold_507:210208..212813-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069771 ID=TCONS_00069771|Name=TCONS_00069771|organism=Clytia hemisphaerica|type=transcript|length=2606bp|location=Sequence derived from alignment at scaffold_507:210208..212813- (Clytia hemisphaerica)
ATTGGTGATGTAGCTGAGGATAATTCCGTGCAGGAAAGATACTTCTCTTA
CCTGGATAAACTTCAGAAGAAAAAGAATCCAAAACAAGAATCCTTGTTCA
TGTACTTAGACTTGGATTTTAAAAGTCGCAGAGAATTTTTACGAAAACTG
AAAAAGGATCGAACCCAACTTTTTGTTCGACAAATACCCAATATTTCTAA
CCAGTCACATTCAGGTTAGTTTTGTTTGTTAAATTTTTTAAGGTGGTTTA
TTAACCAAAAGTGCCTGAAAAAAAATTAATTATTGAATTTGCCAGCCAAC
TTTATTTTTTGTCAGCAAAAGCTATTTTTCTGTGCTATCCTATACAACGA
ATAAAATGAAATGATTTTAAAAGCTTCATAGCGTCCCTGAGGGATTTTAT
TTTGGTATGATCTGTAATTTGGTCCTGGGACTGAATAAAAGGCTCTTCCA
GTTTGTTACTTTTTACTAGAATTTTTCTCAGGAAAAGTCTCATTCTTCCC
TAACAAACCTATTTCAGACCATATGATTTGCCCATGTTTCAGTTTTTCAT
TGAATTAAGTTTTCTTTTCCCTTTTTAATTTTCTTTAATTAATCCAAGTT
CGAATTGTATTATGTTTGCTCTTTATTCTTCTGTTTAGATATCAAAAGCA
ACTTGTACATAGATTGTGTTATTTATTTAGATTATTGAGGAAGCTCACAG
AGTTATTGGATCAAACAAAGAACCTCCACTTACATATATGCAAGGATGTG
TTGACCGACTCAACAATAAGGTGGAGCCGATACTTTTCCAAGCAGTAGAG
GAAGGCCTCTTATCTGCTGCTACAGTGGTGAAGCACAGTAGGTTTATTTT
AGACAATTTCAGCACTATTTTCGTTATGACCGTATGTCTCTACTCTAGTG
TATTTTTTGAAAATCAATTGAATATCTGCACCTGGTACTACTCTTTTAAA
ACGGCAATTGAAGCAATTTAAGGGACTGGACCTAGTATGAACCAAGTTGG
CCAAAGAACTAAAATTGACAGAAATGGTCAAATACTGGAAATTTTGGCTT
CGTATTGGATTGTTGCTTTGTGTAAAGAGAAACGAAATGTTTTCCTAAGA
TCCTACAGTGTAAACTTATAATTCAGGGTTTGACCTTTGAAGGCATATGT
AATGCACCAATATCCAATGCAAAGCCAAATTCTCCAATATTTGACCATTT
CTGCCATTTTTAGTACTTTGGACATAGTAGTTCCAGTCCTCTGAATTGAC
CAAATGCTTCAATTGCTGTTCTGAAAGAGTATTACCAGGTGCAGATATTC
CATCAAATACCCTAGAGTAGAGACGTACAGTCATAACGAAAATGCTGCAA
AAAATTGCCAAAATTGTCTTTATTCTAGTATTATAGCCAGCTTGAGAACG
AGAGAAGGGATTACAACTCTCCCCCTCTCAAACATTCCTTGGAGTCCATT
ACATAGGTATTGTTTTTTAGAAGTATCAAGATATCGGTGTTAGGGATTTT
AAATTTTCTTTGCCCCAAATGTCTTGGTAATAGAGGGATAGAGGTAATCC
TTTTTTACATAGCTATTTATAATTTTGAGTACTAAGAACATGCCATCGCC
TAACTAATTTTCTAAAAGGGGTAGGTAATGTTTATAATGGTTTAATGCCC
TGTAAGATGTGATTTTCCAAATATGATTGTCATGGAGGTAAAACTCTTCC
AACATGAGATTTTAATCTTATTTTTTAGGTAACAAACTGGCATGTCTAAT
TGAACACATGGAAATGATATTTCCTGAAAAGAAAGGCAAAGGCAAAAAGA
AAGCTCCCGCCGCCACTCAAATTGTCTTTCAAGTTGAGGTAATAATTTAT
TTTTGTTGAAAATTTTGCTCAGACACTCAGATTAGTACTAGTAATAGCAT
GGTTTGGAGTGTAATAAACTATTATTCGCTAGTAACAAAGGAGAAAAGGG
AATTTTCACGAGTTCAAAGAACGAGTGCAAATTATGTCAAAATATGTATT
CAGATTTTTCAGATCTTTTGCAATTTGAACCATTTTTAAATTAGTTTTTC
GCTCTCTTCTCTTCTACAGGATTGTGAGGATGCAAAGCTTACGAAACGTA
TCAAGTGTGATTATCTGGTCTTCTTACATGATACACATCATGTGTATCTT
TACAAAGATGGAATTATTATTTCCAGATTTCAACTCAAAGATTACGATCT
TGCTGTTATTTCTTACATCTCATTGTTTTACGTCTTGGACCAATACTACC
CCAATTCTCACAAGATTGGGCTAGAAGTTTTGCAACGGTTGGTCCTCATG
GATAGTGCATCCACAATCACCGAACAGACCAAAGAACGTATTGAAAAACT
AGAAAAGTTCCTAGAATGACTCTTTAAAAACATCCATTAAAACAGGAGTG
AAAACTCTTTGTGCCACTGTATAGTTATTTCTGTTTCCAAGTCACCTTTT
CTTTTGATCATATTTTAGCCTTTAGATATTGTCGCATCAAAACTAAAAAG
ACTTCACATTTTATCAAAAATGGGCTGCTGGTGGATTCACATTCAAGGGG
ACATTCTTCAGGTCTAGAAAGCCTTATCTACCAAAATTTGACCTCTTTTG
CCTTGC

Coding sequence (CDS) from alignment at scaffold_507:210208..212813-

>TCONS_00069771 ID=TCONS_00069771|Name=TCONS_00069771|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_507:210208..212813- (Clytia hemisphaerica)
GATTGTGAGGATGCAAAGCTTACGAAACGTATCAAGTGTGATTATCTGGT
CTTCTTACATGATACACATCATGTGTATCTTTACAAAGATGGAATTATTA
TTTCCAGATTTCAACTCAAAGATTACGATCTTGCTGTTATTTCTTACATC
TCATTGTTTTACGTCTTGGACCAATACTACCCCAATTCTCACAAGATTGG
GCTAGAAGTTTTGCAACGGTTGGTCCTCATGGATAGTGCATCCACAATCA
CCGAACAGACCAAAGAACGTATTGAAAAACTAGAAAAGTTCCTAGAATGA
GTAACAAACTGGCATGTCTAATTGAACACATGGAAATGATATTTCCTGAA
AAGAAAGGCAAAGGCAAAAAGAAAGCTCCCGCCGCCACTCAAATTGTCTT
TCAAGTTGAGATGCAAGGATGTGTTGACCGACTCAACAATAAGGTGGAGC
CGATACTTTTCCAAGCAGTAGAGGAAGGCCTCTTATCTGCTGCTACAGTG
GTGAAGCACAGATTGTGAGGATGCAAAGCTTACGAAACGTATCAAGTGTG
ATTATCTGGTCTTCTTACATGATACACATCATGTGTATCTTTACAAAGAT
GGAATTATTATTTCCAGATTTCAACTCAAAGATTACGATCTTGCTGTTAT
TTCTTACATCTCATTGTTTTACGTCTTGGACCAATACTACCCCAATTCTC
ACAAGATTGGGCTAGAAGTTTTGCAACGGTTGGTCCTCATGGATAGTGCA
TCCACAATCACCGAACAGACCAAAGAACGTATTGAAAAACTAGAAAAGTT
CCTAGAATGAGTAACAAACTGGCATGTCTAATTGAACACATGGAAATGAT
ATTTCCTGAAAAGAAAGGCAAAGGCAAAAAGAAAGCTCCCGCCGCCACTC
AAATTGTCTTTCAAGTTGAGATGCAAGGATGTGTTGACCGACTCAACAAT
AAGGTGGAGCCGATACTTTTCCAAGCAGTAGAGGAAGGCCTCTTATCTGC
TGCTACAGTGGTGAAGCACAGATTGTGAGGATGCAAAGCTTACGAAACGT
ATCAAGTGTGATTATCTGGTCTTCTTACATGATACACATCATGTGTATCT
TTACAAAGATGGAATTATTATTTCCAGATTTCAACTCAAAGATTACGATC
TTGCTGTTATTTCTTACATCTCATTGTTTTACGTCTTGGACCAATACTAC
CCCAATTCTCACAAGATTGGGCTAGAAGTTTTGCAACGGTTGGTCCTCAT
GGATAGTGCATCCACAATCACCGAACAGACCAAAGAACGTATTGAAAAAC
TAGAAAAGTTCCTAGAATGAGTAACAAACTGGCATGTCTAATTGAACACA
TGGAAATGATATTTCCTGAAAAGAAAGGCAAAGGCAAAAAGAAAGCTCCC
GCCGCCACTCAAATTGTCTTTCAAGTTGAGATGCAAGGATGTGTTGACCG
ACTCAACAATAAGGTGGAGCCGATACTTTTCCAAGCAGTAGAGGAAGGCC
TCTTATCTGCTGCTACAGTGGTGAAGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043445XLOC_043445Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069771-proteinTCONS_00069771-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069771-exon-scaffold_507-1575043694:212600..212813TCONS_00069771-exon-scaffold_507-1575043694:212600..212813Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1575043694:211977..212133TCONS_00069771-exon-scaffold_507-1575043694:211977..212133Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1575043694:210976..211085TCONS_00069771-exon-scaffold_507-1575043694:210976..211085Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1575043694:210208..210744TCONS_00069771-exon-scaffold_507-1575043694:210208..210744Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1510915933:212600..212813TCONS_00069771-exon-scaffold_507-1510915933:212600..212813Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1510915933:211977..212133TCONS_00069771-exon-scaffold_507-1510915933:211977..212133Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1510915933:210976..211085TCONS_00069771-exon-scaffold_507-1510915933:210976..211085Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1510915933:210208..210744TCONS_00069771-exon-scaffold_507-1510915933:210208..210744Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1491911889:212600..212813TCONS_00069771-exon-scaffold_507-1491911889:212600..212813Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1491911889:211977..212133TCONS_00069771-exon-scaffold_507-1491911889:211977..212133Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1491911889:210976..211085TCONS_00069771-exon-scaffold_507-1491911889:210976..211085Clytia hemisphaericaexon
TCONS_00069771-exon-scaffold_507-1491911889:210208..210744TCONS_00069771-exon-scaffold_507-1491911889:210208..210744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:210208..212813 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.198614	0.0971565	0.473115	0.280396	1.46591	2.05855	1.33037	1.05281	1.73276	1.13905	1.0208	1.12069	0.174312	0.16034	0.0329209	0.0674857	0.0932352	0.146346	0.0424004	0	0.0502819	0.182854	1.97752	2.43723	0.0601323	0	0.0973486	0.0991829
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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