TCONS_00069807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069807
Unique NameTCONS_00069807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069807 ID=TCONS_00069807|Name=TCONS_00069807|organism=Clytia hemisphaerica|type=transcript|length=662bp
NCTTGGCAAGACGCTTCATTTGTTGGTTGAACACTTTCAAAGCGATATGA
TGATTTGGTGCTAGGTAAGTGACAGGATCCATCATGAGTGGGAGTGTTGC
AGTAGATGATCGATCACTAACATTGACAGTGACTGAGTGGTCAATGACAT
CTTGCTCAATCTCTTCCTGAACACTCATGGTTTCGTCAGTTGATTGAAGA
TCCTTGCATTTCTGGTAGCCACGGCAGTTGGTGCATCGGAATGTCAGCTC
ACTTCCAAGTTGTTCGGCTGCCTCAAATAGCATAACTTTGTTGACAAAAT
CTTGATCCTCTGCTTTGTCTGAGACATAGATGTCAGCTTGGTAAGATGGA
TATCCTAGAAGTTTGGCATCTGGGTTGACATGATACCCAAAGTTGAACAG
TCGAAATTGTTGATTGACAAAATTAGCGATGTTGTGATGTTGTTGATTAA
TCTCTCTGAATAGTCTATGGGGACCACCAACAACACCTCTTGAACCATCG
GCACTCTTGAAGTGGGACTCAAAGATAGTGAGCCCTGATGGCAATTGAAA
GATGAATTTAGGATGGTAACGCATGTATTGTATACCTATCATAAAATCGA
CTTCTCCACCAACTTGCGCTGATACCAGTGGGAGTTTCTTGGGATCACCA
CCAATGTCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00069807-protein

>TCONS_00069807-protein ID=TCONS_00069807-protein|Name=TCONS_00069807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
KDIGGDPKKLPLVSAQVGGEVDFMIGIQYMRYHPKFIFQLPSGLTIFESH
FKSADGSRGVVGGPHRLFREINQQHHNIANFVNQQFRLFNFGYHVNPDAK
LLGYPSYQADIYVSDKAEDQDFVNKVMLFEAAEQLGSELTFRCTNCRGYQ
KCKDLQSTDETMSVQEEIEQDVIDHSVTVNVSDRSSTATLPLMMDPVTYL
APNHHIALKVFNQQMKRLAK
Run BLAST on NCBI

transcript from alignment at scaffold_508:41733..42394

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069807 ID=TCONS_00069807|Name=TCONS_00069807|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at scaffold_508:41733..42394 (Clytia hemisphaerica)
CAAAGACATTGGTGGTGATCCCAAGAAACTCCCACTGGTATCAGCGCAAG
TTGGTGGAGAAGTCGATTTTATGATAGGTATACAATACATGCGTTACCAT
CCTAAATTCATCTTTCAATTGCCATCAGGGCTCACTATCTTTGAGTCCCA
CTTCAAGAGTGCCGATGGTTCAAGAGGTGTTGTTGGTGGTCCCCATAGAC
TATTCAGAGAGATTAATCAACAACATCACAACATCGCTAATTTTGTCAAT
CAACAATTTCGACTGTTCAACTTTGGGTATCATGTCAACCCAGATGCCAA
ACTTCTAGGATATCCATCTTACCAAGCTGACATCTATGTCTCAGACAAAG
CAGAGGATCAAGATTTTGTCAACAAAGTTATGCTATTTGAGGCAGCCGAA
CAACTTGGAAGTGAGCTGACATTCCGATGCACCAACTGCCGTGGCTACCA
GAAATGCAAGGATCTTCAATCAACTGACGAAACCATGAGTGTTCAGGAAG
AGATTGAGCAAGATGTCATTGACCACTCAGTCACTGTCAATGTTAGTGAT
CGATCATCTACTGCAACACTCCCACTCATGATGGATCCTGTCACTTACCT
AGCACCAAATCATCATATCGCTTTGAAAGTGTTCAACCAACAAATGAAGC
GTCTTGCCAAGN

Coding sequence (CDS) from alignment at scaffold_508:41733..42394

>TCONS_00069807 ID=TCONS_00069807|Name=TCONS_00069807|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_508:41733..42394 (Clytia hemisphaerica)
AAAGACATTGGTGGTGATCCCAAGAAACTCCCACTGGTATCAGCGCAAGT
TGGTGGAGAAGTCGATTTTATGATAGGTATACAATACATGCGTTACCATC
CTAAATTCATCTTTCAATTGCCATCAGGGCTCACTATCTTTGAGTCCCAC
TTCAAGAGTGCCGATGGTTCAAGAGGTGTTGTTGGTGGTCCCCATAGACT
ATTCAGAGAGATTAATCAACAACATCACAACATCGCTAATTTTGTCAATC
AACAATTTCGACTGTTCAACTTTGGGTATCATGTCAACCCAGATGCCAAA
CTTCTAGGATATCCATCTTACCAAGCTGACATCTATGTCTCAGACAAAGC
AGAGGATCAAGATTTTGTCAACAAAGTTATGCTATTTGAGGCAGCCGAAC
AACTTGGAAGTGAGCTGACATTCCGATGCACCAACTGCCGTGGCTACCAG
AAATGCAAGGATCTTCAATCAACTGACGAAACCATGAGTGTTCAGGAAGA
GATTGAGCAAGATGTCATTGACCACTCAGTCACTGTCAATGTTAGTGATC
GATCATCTACTGCAACACTCCCACTCATGATGGATCCTGTCACTTACCTA
GCACCAAATCATCATATCGCTTTGAAAGTGTTCAACCAACAAATGAAGCG
TCTTGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043466XLOC_043466Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069807-proteinTCONS_00069807-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069807-exon-scaffold_508-1491911889:41733..42394TCONS_00069807-exon-scaffold_508-1491911889:41733..42394Clytia hemisphaericaexon
TCONS_00069807-exon-scaffold_508-1510915933:41733..42394TCONS_00069807-exon-scaffold_508-1510915933:41733..42394Clytia hemisphaericaexon
TCONS_00069807-exon-scaffold_508-1575043694:41733..42394TCONS_00069807-exon-scaffold_508-1575043694:41733..42394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_508supercontigscaffold_508:41733..42394 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.391587	0.45823	0.354699	0.260264	4.119	2.4203	3.7255	3.01645	0.593968	1.30796	0.952151	1.04318	1.25007	0.540922	0.711539	1.14538	1.05827	1.62703	0.83253	0.609828	1.0601	1.88365	0.179594	0.898024	2.43849	2.40143	0.644331	0.343824	0.0869261	0.44282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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