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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071615 ID=TCONS_00071615|Name=TCONS_00071615|organism=Clytia hemisphaerica|type=transcript|length=891bp
AAGCTCTTGCATATCCAGCCCACTATCctgatgcaaaaaatcattttaat
tctCCGAGAGATAAGAACATAACCCCATCAAAATATATTCATACTCGATT
GAAATCCTCAGATGATCGCTTCGCTTCAGACCCACAATATATTTTTAGTT
CGTTGCATTGGATTGAAAGCTCTAATGTTGCTAGTGCAATTAGTTTCTCA
CAGCAAAAGCATTTTCAAAGTGATATATCAGCAGGTAGATTAATGAATCC
TANCTGATTGCGATTCTGAAGAAATTTACTGGATTTGCAACTCATGTGAT
AAAGCCATAAAAAAAGAGCAACTCCCTGTACAAGCACAAGCCAATAATCT
CCATTTATCACCAAAACTTCCAGAGCTAGAGGAATTATGTCCAATAGAAA
TGATGCTAGTTTCCCAAATAATTCCATTTATGTTCATTGTCNACTCCACA
GTGGTGTCATAATATGATGCTAGATGTTTTAGCAAAATGTCGAGTTTACG
GACCAAGCACATATTTTCTTACGTGGACTGCAGCATTATTCAAATGGACT
AATATTATCAAAGTAGTCGCTACACAATACGGAGAAAATCTAAGTGATGA
AGATGTAAATAGGATGGACTGGAGTCAAAaagttcaatatttcaaaagaa
accCGGTGACAGTTGCCAGACAAATTGACCATGTTTTTAATAAGGTTTTC
CCGAAAATGCTCATGAACGGTATGCATCCAATAGGACAAATTTTAAATTA
CGATGATCGCAGAGAATTCCAACACCGATCAGGTCTAGAACATGTCCATG
CTCAAATTCATATCAAAGATGCCCCTGTAATTGACGAAAATGACAGTAGC
AAAGACAATCAAGTTATTGATTTTATCGACAGATACATTAC Run BLAST on NCBI protein sequence of TCONS_00071615-protein >TCONS_00071615-protein ID=TCONS_00071615-protein|Name=TCONS_00071615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MMLDVLAKCRVYGPSTYFLTWTAALFKWTNIIKVVATQYGENLSDEDVNR
MDWSQKVQYFKRNPVTVARQIDHVFNKVFPKMLMNGMHPIGQILNYDDRR
EFQHRSGLEHVHAQIHIKDAPVIDENDSSKDNQVIDFIDRYI Run BLAST on NCBI transcript from alignment at scaffold_62:40048..40938 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071615 ID=TCONS_00071615|Name=TCONS_00071615|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at scaffold_62:40048..40938 (Clytia hemisphaerica)
GTAATGTATCTGTCGATAAAATCAATAACTTGATTGTCTTTGCTACTGTC
ATTTTCGTCAATTACAGGGGCATCTTTGATATGAATTTGAGCATGGACAT
GTTCTAGACCTGATCGGTGTTGGAATTCTCTGCGATCATCGTAATTTAAA
ATTTGTCCTATTGGATGCATACCGTTCATGAGCATTTTCGGGAAAACCTT
ATTAAAAACATGGTCAATTTGTCTGGCAACTGTCACCGggtttcttttga
aatattgaacttTTTGACTCCAGTCCATCCTATTTACATCTTCATCACTT
AGATTTTCTCCGTATTGTGTAGCGACTACTTTGATAATATTAGTCCATTT
GAATAATGCTGCAGTCCACGTAAGAAAATATGTGCTTGGTCCGTAAACTC
GACATTTTGCTAAAACATCTAGCATCATATTATGACACCACTGTGGAGTN
GACAATGAACATAAATGGAATTATTTGGGAAACTAGCATCATTTCTATTG
GACATAATTCCTCTAGCTCTGGAAGTTTTGGTGATAAATGGAGATTATTG
GCTTGTGCTTGTACAGGGAGTTGCTCTTTTTTTATGGCTTTATCACATGA
GTTGCAAATCCAGTAAATTTCTTCAGAATCGCAATCAGNTAGGATTCATT
AATCTACCTGCTGATATATCACTTTGAAAATGCTTTTGCTGTGAGAAACT
AATTGCACTAGCAACATTAGAGCTTTCAATCCAATGCAACGAACTAAAAA
TATATTGTGGGTCTGAAGCGAAGCGATCATCTGAGGATTTCAATCGAGTA
TGAATATATTTTGATGGGGTTATGTTCTTATCTCTCGGagaattaaaatg
attttttgcatcagGATAGTGGGCTGGATATGCAAGAGCTT Coding sequence (CDS) from alignment at scaffold_62:40048..40938 >TCONS_00071615 ID=TCONS_00071615|Name=TCONS_00071615|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_62:40048..40938 (Clytia hemisphaerica)
AATGTATCTGTCGATAAAATCAATAACTTGATTGTCTTTGCTACTGTCAT
TTTCGTCAATTACAGGGGCATCTTTGATATGAATTTGAGCATGGACATGT
TCTAGACCTGATCGGTGTTGGAATTCTCTGCGATCATCGTAATTTAAAAT
TTGTCCTATTGGATGCATACCGTTCATGAGCATTTTCGGGAAAACCTTAT
TAAAAACATGGTCAATTTGTCTGGCAACTGTCACCGggtttcttttgaaa
tattgaacttTTTGACTCCAGTCCATCCTATTTACATCTTCATCACTTAG
ATTTTCTCCGTATTGTGTAGCGACTACTTTGATAATATTAGTCCATTTGA
ATAATGCTGCAGTCCACGTAAGAAAATATGTGCTTGGTCCGTAAACTCGA
CATTTTGCTAAAACATCTAGCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071615-exon-scaffold_62-1491911889:40048..40938 | TCONS_00071615-exon-scaffold_62-1491911889:40048..40938 | Clytia hemisphaerica | exon |
| TCONS_00071615-exon-scaffold_62-1510915933:40048..40938 | TCONS_00071615-exon-scaffold_62-1510915933:40048..40938 | Clytia hemisphaerica | exon |
| TCONS_00071615-exon-scaffold_62-1575043694:40048..40938 | TCONS_00071615-exon-scaffold_62-1575043694:40048..40938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:40048..40938 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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