TCONS_00071620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071620
Unique NameTCONS_00071620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071620 ID=TCONS_00071620|Name=TCONS_00071620|organism=Clytia hemisphaerica|type=transcript|length=394bp
AAAGAAGCTCTTCATACTTAGACTTTGTTACATTTTCTATTTGAAGCCCA
TACTTTTCTCTCTCCAAgttaaaaagcaaataaaaatgaACATCATGTCA
GACTACCCCATGAGTGACGACGCTCTGAGTGCGGAGATGTCCGAGGAATC
AAAAAGAGAGGAAGTGGAGGAACGAGAAAAGGTGGAACAGATGAAGGAGA
TGGAAAGACAAAGAAATGAAATAGCGAGTTTGCGTAACGAACTAGACAAA
GCAAATAAACGTCTTGCCGAAGCAGAGAAACGGAAAGAAAtagaaaagat
gaaaaagacAGAACAGGCTAAgaaagaacaagctaagaaagAACAAGCTA
AGAGAGAAAAGGCGAAAAAAGAACAGGAGAAGAAAGAACAGGAA
Run BLAST on NCBI

protein sequence of TCONS_00071620-protein

>TCONS_00071620-protein ID=TCONS_00071620-protein|Name=TCONS_00071620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
KKLFILRLCYIFYLKPILFSLQVKKQIKMNIMSDYPMSDDALSAEMSEES
KREEVEEREKVEQMKEMERQRNEIASLRNELDKANKRLAEAEKRKEIEKM
KKTEQAKKEQAKKEQAKREKAKKEQEKKEQE
Run BLAST on NCBI

transcript from alignment at scaffold_62:62991..63384

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071620 ID=TCONS_00071620|Name=TCONS_00071620|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_62:62991..63384 (Clytia hemisphaerica)
TTCCTGTTCTTTCTTCTCCTGTTCTTTTTTCGCCTTTTCTCTCTTAGCTT
GTTctttcttagcttgttctttcTTAGCCTGTTCTgtctttttcatcttt
tctaTTTCTTTCCGTTTCTCTGCTTCGGCAAGACGTTTATTTGCTTTGTC
TAGTTCGTTACGCAAACTCGCTATTTCATTTCTTTGTCTTTCCATCTCCT
TCATCTGTTCCACCTTTTCTCGTTCCTCCACTTCCTCTCTTTTTGATTCC
TCGGACATCTCCGCACTCAGAGCGTCGTCACTCATGGGGTAGTCTGACAT
GATGTtcatttttatttgctttttaacTTGGAGAGAGAAAAGTATGGGCT
TCAAATAGAAAATGTAACAAAGTCTAAGTATGAAGAGCTTCTTT

Coding sequence (CDS) from alignment at scaffold_62:62991..63384

>TCONS_00071620 ID=TCONS_00071620|Name=TCONS_00071620|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_62:62991..63384 (Clytia hemisphaerica)
TTCCTGTTCTTTCTTCTCCTGTTCTTTTTTCGCCTTTTCTCTCTTAGCTT
GTTctttcttagcttgttctttcTTAGCCTGTTCTgtctttttcatcttt
tctaTTTCTTTCCGTTTCTCTGCTTCGGCAAGACGTTTATTTGCTTTGTC
TAGTTCGTTACGCAAACTCGCTATTTCATTTCTTTGTCTTTCCATCTCCT
TCATCTGTTCCACCTTTTCTCGTTCCTCCACTTCCTCTCTTTTTGATTCC
TCGGACATCTCCGCACTCAGAGCGTCGTCACTCATGGGGTAGTCTGACAT
GATGTtcatttttatttgctttttaacTTGGAGAGAGAAAAGTATGGGCT
TCAAATAGAAAATGTAACAAAGTCTAAGTATGAAGAGCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044499XLOC_044499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071620-exon-scaffold_62-1491911889:62991..63384TCONS_00071620-exon-scaffold_62-1491911889:62991..63384Clytia hemisphaericaexon
TCONS_00071620-exon-scaffold_62-1510915933:62991..63384TCONS_00071620-exon-scaffold_62-1510915933:62991..63384Clytia hemisphaericaexon
TCONS_00071620-exon-scaffold_62-1575043694:62991..63384TCONS_00071620-exon-scaffold_62-1575043694:62991..63384Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071620-proteinTCONS_00071620-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:62991..63384 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157552	0.187008	0.217134	0.424863	1.17501	0.817443	0.323039	1.61574	2.35169	1.40119	0.285772	0.909801	0.465804	1.28597	0.326683	0.23372	0	0.255254	0	0.213322	0	0	0	0	1.23538	3.41593	0.262957	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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