TCONS_00071623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071623
Unique NameTCONS_00071623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071623 ID=TCONS_00071623|Name=TCONS_00071623|organism=Clytia hemisphaerica|type=transcript|length=1460bp
GGCGATTGTCCAATATATTGTACTTGTATTGATCACGATGGAGGGATATT
GGTAGAATGCGTTGATCAGAAAATAGATAGCACTATTTtacgaaatattt
caaaaacactAAATTCGTCTTTAGTGACAATGCTAAATTTTAAGAATAAT
GATATGGTCAATTTCAATTCTGAATATTTTGCTGGTTATACACAATTAGA
GATTATTAATATTCAACAGAACAAAATTAGTCATATACCTCAGAATATAT
CCAGCCACATACCCTCTGTTAAACAAGTCAGTTTACAGACAAATGAGATT
GCCAACCTTAACCAAGAAGACTTTGAATCCTGGCAAAATATAGAAGTCTT
GGGATTGACTGACAATATGATTACGTCACTACATTCAGGTGTTTTTAAAT
ATCTGGTCAATCTACAACAACTTTTTTTGGATGGTAATCGAATCACAGAG
TTAAAAGAAGGTACATTTAATGGGCTAAGCAGAATTCAACGATTGTATTT
AAGTCGAAATAAGATCGAGACCATCCAATCTGGACTGTTTACTGATCTTA
TAAATATTGAAGTTGTTACGCTAGAATCGAATAAATTAACATCTCTCAAA
AGTGAGACTTTTGTCAACATACGTACTTTGATATTAGACAGTAACGAAct
aaatgttaagaatatttcagatgACACTTTTGTAAATGTCAGAATAGTCT
CTTTAACGTCGAACCCGGCGTTAACAACATTACGGCGAACTTGGTTTACG
TCGTCTCCAAGAGCTGTAATATTTACCGAAAATCCTCTCCACTGTGGATG
TACAATGTATGGCAATCTGAAAGCATTTAATGGTACCATATTCAATGATG
GCAAATGTCAAACACCAGAGAGAATggttgaaaatgatttaaataCATTT
ATTAGCAGTAATCCCTTAAACTGTACAGTATGTGACCATCAACCTTGCCA
ACATGGTTCCAAGTGTGCATCTACCCTTAATGGTAATACCTATCAATGTG
AATGCACTGAAGGATATTTGGGAAAGCATTGTGACGTTTTTGGAAGAAAG
GGGATGGTCAATAAAAGTGACGATTCGTTAAGCTCTGGTTACATTGCCTT
GATAGccgttgtttttgttgttttgattggtTTAATTTTGATTCTAGTTT
ACTGGAAACACCGAGACATTAATAAACATGAAAAATCAGAGGAAACCCCC
AAGGAGGAAGACAAATCCAAGGAAAAGGAATCCCCAACAAGGGAGGAAAC
CCCTAGAAATGAGGGAACCCCTCCACAACTGGAGACTCCCATTTCAGCCG
TAAATGAAGGCTATCATGAGTCAACTGTTGTATAATTATtggaatattat
ttttttaatttattcattattcatcGTAGATTGATTTcgttattggacca
tttttagcaatttaaagttcggatGAGAAAGTCACTTTTGTGCTTATTGA
TAATTTgctc
Run BLAST on NCBI

protein sequence of TCONS_00071623-protein

>TCONS_00071623-protein ID=TCONS_00071623-protein|Name=TCONS_00071623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
GDCPIYCTCIDHDGGILVECVDQKIDSTILRNISKTLNSSLVTMLNFKNN
DMVNFNSEYFAGYTQLEIINIQQNKISHIPQNISSHIPSVKQVSLQTNEI
ANLNQEDFESWQNIEVLGLTDNMITSLHSGVFKYLVNLQQLFLDGNRITE
LKEGTFNGLSRIQRLYLSRNKIETIQSGLFTDLINIEVVTLESNKLTSLK
SETFVNIRTLILDSNELNVKNISDDTFVNVRIVSLTSNPALTTLRRTWFT
SSPRAVIFTENPLHCGCTMYGNLKAFNGTIFNDGKCQTPERMVENDLNTF
ISSNPLNCTVCDHQPCQHGSKCASTLNGNTYQCECTEGYLGKHCDVFGRK
GMVNKSDDSLSSGYIALIAVVFVVLIGLILILVYWKHRDINKHEKSEETP
KEEDKSKEKESPTREETPRNEGTPPQLETPISAVNEGYHESTVV
Run BLAST on NCBI

transcript from alignment at scaffold_62:238809..240268

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071623 ID=TCONS_00071623|Name=TCONS_00071623|organism=Clytia hemisphaerica|type=transcript|length=1460bp|location=Sequence derived from alignment at scaffold_62:238809..240268 (Clytia hemisphaerica)
gagcAAATTATCAATAAGCACAAAAGTGACTTTCTCatccgaactttaaa
ttgctaaaaatggtccaataacgAAATCAATCTACgatgaataatgaata
aattaaaaaaataatattccaATAATTATACAACAGTTGACTCATGATAG
CCTTCATTTACGGCTGAAATGGGAGTCTCCAGTTGTGGAGGGGTTCCCTC
ATTTCTAGGGGTTTCCTCCCTTGTTGGGGATTCCTTTTCCTTGGATTTGT
CTTCCTCCTTGGGGGTTTCCTCTGATTTTTCATGTTTATTAATGTCTCGG
TGTTTCCAGTAAACTAGAATCAAAATTAAaccaatcaaaacaacaaaaac
aacggCTATCAAGGCAATGTAACCAGAGCTTAACGAATCGTCACTTTTAT
TGACCATCCCCTTTCTTCCAAAAACGTCACAATGCTTTCCCAAATATCCT
TCAGTGCATTCACATTGATAGGTATTACCATTAAGGGTAGATGCACACTT
GGAACCATGTTGGCAAGGTTGATGGTCACATACTGTACAGTTTAAGGGAT
TACTGCTAATAAATGtatttaaatcattttcaaccATTCTCTCTGGTGTT
TGACATTTGCCATCATTGAATATGGTACCATTAAATGCTTTCAGATTGCC
ATACATTGTACATCCACAGTGGAGAGGATTTTCGGTAAATATTACAGCTC
TTGGAGACGACGTAAACCAAGTTCGCCGTAATGTTGTTAACGCCGGGTTC
GACGTTAAAGAGACTATTCTGACATTTACAAAAGTGTcatctgaaatatt
cttaacatttagTTCGTTACTGTCTAATATCAAAGTACGTATGTTGACAA
AAGTCTCACTTTTGAGAGATGTTAATTTATTCGATTCTAGCGTAACAACT
TCAATATTTATAAGATCAGTAAACAGTCCAGATTGGATGGTCTCGATCTT
ATTTCGACTTAAATACAATCGTTGAATTCTGCTTAGCCCATTAAATGTAC
CTTCTTTTAACTCTGTGATTCGATTACCATCCAAAAAAAGTTGTTGTAGA
TTGACCAGATATTTAAAAACACCTGAATGTAGTGACGTAATCATATTGTC
AGTCAATCCCAAGACTTCTATATTTTGCCAGGATTCAAAGTCTTCTTGGT
TAAGGTTGGCAATCTCATTTGTCTGTAAACTGACTTGTTTAACAGAGGGT
ATGTGGCTGGATATATTCTGAGGTATATGACTAATTTTGTTCTGTTGAAT
ATTAATAATCTCTAATTGTGTATAACCAGCAAAATATTCAGAATTGAAAT
TGACCATATCATTATTCTTAAAATTTAGCATTGTCACTAAAGACGAATTT
agtgtttttgaaatatttcgtaAAATAGTGCTATCTATTTTCTGATCAAC
GCATTCTACCAATATCCCTCCATCGTGATCAATACAAGTACAATATATTG
GACAATCGCC

Coding sequence (CDS) from alignment at scaffold_62:238809..240268

>TCONS_00071623 ID=TCONS_00071623|Name=TCONS_00071623|organism=Clytia hemisphaerica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_62:238809..240268 (Clytia hemisphaerica)
TTATACAACAGTTGACTCATGATAGCCTTCATTTACGGCTGAAATGGGAG
TCTCCAGTTGTGGAGGGGTTCCCTCATTTCTAGGGGTTTCCTCCCTTGTT
GGGGATTCCTTTTCCTTGGATTTGTCTTCCTCCTTGGGGGTTTCCTCTGA
TTTTTCATGTTTATTAATGTCTCGGTGTTTCCAGTAAACTAGAATCAAAA
TTAAaccaatcaaaacaacaaaaacaacggCTATCAAGGCAATGTAACCA
GAGCTTAACGAATCGTCACTTTTATTGACCATCCCCTTTCTTCCAAAAAC
GTCACAATGCTTTCCCAAATATCCTTCAGTGCATTCACATTGATAGGTAT
TACCATTAAGGGTAGATGCACACTTGGAACCATGTTGGCAAGGTTGATGG
TCACATACTGTACAGTTTAAGGGATTACTGCTAATAAATGtatttaaatc
attttcaaccATTCTCTCTGGTGTTTGACATTTGCCATCATTGAATATGG
TACCATTAAATGCTTTCAGATTGCCATACATTGTACATCCACAGTGGAGA
GGATTTTCGGTAAATATTACAGCTCTTGGAGACGACGTAAACCAAGTTCG
CCGTAATGTTGTTAACGCCGGGTTCGACGTTAAAGAGACTATTCTGACAT
TTACAAAAGTGTcatctgaaatattcttaacatttagTTCGTTACTGTCT
AATATCAAAGTACGTATGTTGACAAAAGTCTCACTTTTGAGAGATGTTAA
TTTATTCGATTCTAGCGTAACAACTTCAATATTTATAAGATCAGTAAACA
GTCCAGATTGGATGGTCTCGATCTTATTTCGACTTAAATACAATCGTTGA
ATTCTGCTTAGCCCATTAAATGTACCTTCTTTTAACTCTGTGATTCGATT
ACCATCCAAAAAAAGTTGTTGTAGATTGACCAGATATTTAAAAACACCTG
AATGTAGTGACGTAATCATATTGTCAGTCAATCCCAAGACTTCTATATTT
TGCCAGGATTCAAAGTCTTCTTGGTTAAGGTTGGCAATCTCATTTGTCTG
TAAACTGACTTGTTTAACAGAGGGTATGTGGCTGGATATATTCTGAGGTA
TATGACTAATTTTGTTCTGTTGAATATTAATAATCTCTAATTGTGTATAA
CCAGCAAAATATTCAGAATTGAAATTGACCATATCATTATTCTTAAAATT
TAGCATTGTCACTAAAGACGAATTTagtgtttttgaaatatttcgtaAAA
TAGTGCTATCTATTTTCTGATCAACGCATTCTACCAATATCCCTCCATCG
TGATCAATACAAGTACAATATATTGGACAATCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044502XLOC_044502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071623-exon-scaffold_62-1491911889:238809..240268TCONS_00071623-exon-scaffold_62-1491911889:238809..240268Clytia hemisphaericaexon
TCONS_00071623-exon-scaffold_62-1510915933:238809..240268TCONS_00071623-exon-scaffold_62-1510915933:238809..240268Clytia hemisphaericaexon
TCONS_00071623-exon-scaffold_62-1575043694:238809..240268TCONS_00071623-exon-scaffold_62-1575043694:238809..240268Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071623-proteinTCONS_00071623-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:238809..240268 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56719	0.525445	0.12844	0.125659	0	0	0	0	0	0	0	0.0188873	3.18751	2.11543	0	0	0.0638681	0.174567	5.69774	7.25568	0.0548392	0	0.162582	0.354746	0.0608967	0.0543488	1.28325	1.70153	0.0314768	0.0320699
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071623 vs. Swiss-Prot (Human)
Match: CPN2 (Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.135e-21
Identity = 94/346 (27.17%), Postives = 158/346 (45.66%), Query Frame = 1 
Query:   31 DHDGGILVECVDQKIDSTILRNISKTLNSSLVTM----LNFKNNDMVNFNSEYFAGYTQLEIINIQQNKISHIPQNISSHIPSVKQVSLQTNEIANLNQEDFESWQNIEVLGLTDNMITSLHSGVFKYLVNLQQLFLDGNRITELKEGTFNGLSRIQRLYLSRNKIETIQSGLFTDLINIEVVTLESNKLTSLKSETFVNIRTLI---LDSNELNVKNISDDTFV---NVRIVSLTSNPALTTLRRTWFTSSPRAVIFTENPLHCGCTMYGNLKAFNGTIFNDGKCQTPERMVENDLNTFISS------NPLNCTVCDHQPCQHGSKCASTLNGNTYQCECTEGYL 1020
            D  GG L    D ++  +   N+S  + S+L ++    LNF  N +       F     LE +++Q N++  +P+ +   +  +K ++L  N +A L +E F    +++ L L++N ++ L  GVF  L +LQ+LFLD N I+EL    F+ L  ++RL+L RN I  +   +F  L N+  ++L+ N L  L +  F +   L+   L  N+L  + +++ TF    N+R + L+ N A+T L    F      V      L+ G     NL A +  +F +        + +N L T          N  N                  L+GN +QC+C   YL
Sbjct:   91 DAFGG-LPRLEDLEVTGSSFLNLSTNIFSNLTSLGKLTLNF--NMLEALPEGLFQHLAALESLHLQGNQLQALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNISELPPQVFSQLFCLERLWLQRNAITHLPLSIFASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQL--ETVAEGTFAHLSNLRSLMLSYN-AITHLPAGIFRDLEELV-----KLYLGSN---NLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNL----------------ALHGNPWQCDCHLAYL 406
The following BLAST results are available for this feature:
BLAST of TCONS_00071623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPN22.135e-2127.17Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CP... [more]
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