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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000923 ID=TCONS_00000923|Name=TCONS_00000923|organism=Clytia hemisphaerica|type=transcript|length=1708bp
cggacaatgtccgatgtatGGCAATAATTTGTtgagttttgagaattttc
tgATACAATCCCATCTTCTGTTGCTTGcgatatctttttaaaacatcacG
AAACTCAAAAAGCATGTCTCATATTTCCTGTGAGCTTTTAAACggtgtaa
attatttttttaacgtGATCTGTTTTCTCTTTCTCTCAGACTATTAGtat
attaaaaaaatggaagaaaatgcTAAATTACCAGTCGAGAtttcaattga
aaatgaaaaattgttgaAGCTAGAATTGGAATTACAAGAAACGCTACAAA
TTGTTGAATTGAAGAGTCAAACATTGCTGGAATTCGAGGAAGGTATCCAA
AGAGCTCGTACAGCATTAGCTTCACTTAGAAAAGCAAacgagaaattttc
aaactctaTATTGGAATGGGATGATGAAAAGATATTTGAAGATAAATTAC
GGCCGTTGGTTGGTTCTCATAAATCCATATTACAATCTCATCAAAGTCAC
TTTCAAAAAGCTTGTTTGAGTGGCAGAGCTCGCATACAAAAATTAGAATC
AGATCATTTATTAGCACGTTCTGATAAACCTACTGATGCTACCGGAAAAT
CAGACTTACGCAATCGTAAATTACAAAAAGCAGAAGCTGCTACTAAGTCT
AAAGACGCTACACAAGATTTGAAACGTATTGCTTTACTGATGGCTTCCCA
AGTTGAACAGAATGAGCAAAGTAATGTAATCTTGGAGACTTCTTCGCAAC
AAATTGTGAAAATGCATGATGAGTATAAGGGATTGACTGGAATTATTGCA
CTATCCAGAAAACTATTGAACAAGTACAATCGAAGAGAATTGACGGATAC
TCTGCTTATTTTCTTTGGTCTCCTTCTCTTCTTTGCTACCGTTTTATACA
TCCTTTCCAAGAGACTTTGAAATTAGAATCTCTTGTCTTGCTGAAATACT
TTTATTCTTTACCAGTCTGTAAGgagattatatatttttatggaATGGGA
TTTATTGGATTTTATTTGTATtcattttgtgataaattttttGTCATGGG
CTTTTCACTTTTTAAGAATTATACTATAACTGGTACTATAATTCGAAGAT
TGACACACTGAAATGAAATGGGAAATGGTCtacattttctcaaaatatta
gAGGCTATTTCATGATATGTGGTAATaggtgacattttcaaaaataattt
taatagtcaaccaatttatttaattacaaaatttatcttttttttcccAT
TCTAAATGTCACAGATAGTAGATTTTTAGTAATAGTGGTGCTCTTAGTGT
TCTAACAATGTGCAAAATATCTCGAAATTTGAAAGGCAGGCGGTATATAG
GGTATATTTTATATCGTTAAAACATCGACTGACAATCCTCAAGTGAATTG
CCGTTcgcttttttcgacgaatttcacaACTGTCGGTAGCAATTATTGTT
AAGGTGTCATATTAAGTATCGGCTGTCTGTTAGTTGTTACCGATAATTAT
AATCATTACAAGAAACACCTTTTTAAAAGCTTCAAAGCCATGcaagtgtt
ttcttttttgtaagTGTAATCAATTTTTCCATAGTTGACGAAatcttatt
tattatttttagcagaaaaaaaaaggaaaagaaagaaaaataagtttttc
cAAAGCTCCTGGACATGATTTTatactgtaatttttttcaaaattcaata
tcgGTATT Run BLAST on NCBI protein sequence of TCONS_00000923-protein >TCONS_00000923-protein ID=TCONS_00000923-protein|Name=TCONS_00000923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MEENAKLPVEISIENEKLLKLELELQETLQIVELKSQTLLEFEEGIQRAR
TALASLRKANEKFSNSILEWDDEKIFEDKLRPLVGSHKSILQSHQSHFQK
ACLSGRARIQKLESDHLLARSDKPTDATGKSDLRNRKLQKAEAATKSKDA
TQDLKRIALLMASQVEQNEQSNVILETSSQQIVKMHDEYKGLTGIIALSR
KLLNKYNRRELTDTLLIFFGLLLFFATVLYILSKRL Run BLAST on NCBI transcript from alignment at sc0000005:765239..766946 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000923 ID=TCONS_00000923|Name=TCONS_00000923|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0000005:765239..766946 (Clytia hemisphaerica)
AATACcgatattgaattttgaaaaaaattacagtatAAAATCATGTCCAG
GAGCTTTggaaaaacttatttttctttcttttcctttttttttctgctaa
aaataataaataagatTTCGTCAACTATGGAAAAATTGATTACActtaca
aaaaagaaaacacttgCATGGCTTTGAAGCTTTTAAAAAGGTGTTTCTTG
TAATGATTATAATTATCGGTAACAACTAACAGACAGCCGATACTTAATAT
GACACCTTAACAATAATTGCTACCGACAGTtgtgaaattcgtcgaaaaaa
gcgAACGGCAATTCACTTGAGGATTGTCAGTCGATGTTTTAACGATATAA
AATATACCCTATATACCGCCTGCCTTTCAAATTTCGAGATATTTTGCACA
TTGTTAGAACACTAAGAGCACCACTATTACTAAAAATCTACTATCTGTGA
CATTTAGAATgggaaaaaaaagataaattttgtaattaaataaattggtt
gactattaaaattatttttgaaaatgtcacctATTACCACATATCATGAA
ATAGCCTctaatattttgagaaaatgtaGACCATTTCCCATTTCATTTCA
GTGTGTCAATCTTCGAATTATAGTACCAGTTATAGTATAATTCTTAAAAA
GTGAAAAGCCCATGACaaaaaatttatcacaaaatgaATACAAATAAAAT
CCAATAAATCCCATtccataaaaatatataatctcCTTACAGACTGGTAA
AGAATAAAAGTATTTCAGCAAGACAAGAGATTCTAATTTCAAAGTCTCTT
GGAAAGGATGTATAAAACGGTAGCAAAGAAGAGAAGGAGACCAAAGAAAA
TAAGCAGAGTATCCGTCAATTCTCTTCGATTGTACTTGTTCAATAGTTTT
CTGGATAGTGCAATAATTCCAGTCAATCCCTTATACTCATCATGCATTTT
CACAATTTGTTGCGAAGAAGTCTCCAAGATTACATTACTTTGCTCATTCT
GTTCAACTTGGGAAGCCATCAGTAAAGCAATACGTTTCAAATCTTGTGTA
GCGTCTTTAGACTTAGTAGCAGCTTCTGCTTTTTGTAATTTACGATTGCG
TAAGTCTGATTTTCCGGTAGCATCAGTAGGTTTATCAGAACGTGCTAATA
AATGATCTGATTCTAATTTTTGTATGCGAGCTCTGCCACTCAAACAAGCT
TTTTGAAAGTGACTTTGATGAGATTGTAATATGGATTTATGAGAACCAAC
CAACGGCCGTAATTTATCTTCAAATATCTTTTCATCATCCCATTCCAATA
tagagtttgaaaatttctcgtTTGCTTTTCTAAGTGAAGCTAATGCTGTA
CGAGCTCTTTGGATACCTTCCTCGAATTCCAGCAATGTTTGACTCTTCAA
TTCAACAATTTGTAGCGTTTCTTGTAATTCCAATTCTAGCTtcaacaatt
tttcattttcaattgaaaTCTCGACTGGTAATTTAgcattttcttccatt
tttttaatataCTAATAGTCTGAGAGAAAGAGAAAACAGATCacgttaaa
aaaataatttacaccGTTTAAAAGCTCACAGGAAATATGAGACATGCTTT
TTGAGTTTCgtgatgttttaaaaagatatcgCAAGCAACAGAAGATGGGA
TTGTATcagaaaattctcaaaactcaACAAATTATTGCCatacatcggac
attgtccg Coding sequence (CDS) from alignment at sc0000005:765239..766946 >TCONS_00000923 ID=TCONS_00000923|Name=TCONS_00000923|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000005:765239..766946 (Clytia hemisphaerica)
TCAAAGTCTCTTGGAAAGGATGTATAAAACGGTAGCAAAGAAGAGAAGGA
GACCAAAGAAAATAAGCAGAGTATCCGTCAATTCTCTTCGATTGTACTTG
TTCAATAGTTTTCTGGATAGTGCAATAATTCCAGTCAATCCCTTATACTC
ATCATGCATTTTCACAATTTGTTGCGAAGAAGTCTCCAAGATTACATTAC
TTTGCTCATTCTGTTCAACTTGGGAAGCCATCAGTAAAGCAATACGTTTC
AAATCTTGTGTAGCGTCTTTAGACTTAGTAGCAGCTTCTGCTTTTTGTAA
TTTACGATTGCGTAAGTCTGATTTTCCGGTAGCATCAGTAGGTTTATCAG
AACGTGCTAATAAATGATCTGATTCTAATTTTTGTATGCGAGCTCTGCCA
CTCAAACAAGCTTTTTGAAAGTGACTTTGATGAGATTGTAATATGGATTT
ATGAGAACCAACCAACGGCCGTAATTTATCTTCAAATATCTTTTCATCAT
CCCATTCCAATAtagagtttgaaaatttctcgtTTGCTTTTCTAAGTGAA
GCTAATGCTGTACGAGCTCTTTGGATACCTTCCTCGAATTCCAGCAATGT
TTGACTCTTCAATTCAACAATTTGTAGCGTTTCTTGTAATTCCAATTCTA
GCTtcaacaatttttcattttcaattgaaaTCTCGACTGGTAATTTAgca
ttttcttccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000923-exon-sc0000005-1491911889:765239..766946 | TCONS_00000923-exon-sc0000005-1491911889:765239..766946 | Clytia hemisphaerica | exon |
| TCONS_00000923-exon-sc0000005-1510915933:765239..766946 | TCONS_00000923-exon-sc0000005-1510915933:765239..766946 | Clytia hemisphaerica | exon |
| TCONS_00000923-exon-sc0000005-1575043694:765239..766946 | TCONS_00000923-exon-sc0000005-1575043694:765239..766946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:765239..766946 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005606 | Sec20 |
Blast
BLAST of TCONS_00000923 vs. Swiss-Prot (Human)
Match: SEC20 (Vesicle transport protein SEC20 OS=Homo sapiens GN=BNIP1 PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 1.718e-19 Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 3
Query: 459 VGSHKSILQSHQSHFQKACLSGRARIQKLESDHLLARSDKPTDATGKSDLRNRKLQKAEAATKSKDATQDLKRIALLMASQVEQNEQSNVILETSSQQIVKMHDEYKGLTGIIALSRKLLNKYNRRELTDTXXXXXXXXXXXATVLYILSKR 914
V +HK + S+Q+ ++KA L+ + I LE LL G LR RK K A S T+ L I+ +MA QV+Q+E++ L TSS+ I+ ++E+K ++G I L RKL+ KYNRRELTD LLIF L LF ATVLYI+ KR
Sbjct: 81 VENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQ---------GGDLLRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKR 223
The following BLAST results are available for this feature:
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