XLOC_002366 (gene) - C. hemisphaerica

Overview
NameXLOC_002366
Unique NameXLOC_002366
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000041:762112..770439+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002366 ID=XLOC_002366|Name=XLOC_002366|organism=Clytia hemisphaerica|type=gene|length=8328bp|location=Sequence derived from alignment at sc0000041:762112..770439+ (Clytia hemisphaerica)
GGAAATCTCTCAATATTTGAAGAGAAAACTATATCGCTGATCGTGCCATA
GTGAATAAAAGTTTCTACCGGTAGGTATCTTTGttgaaaatcgaaagtga
caaaGTCCACATTTTATCAGATTTGACTTCTTTTGCAAAAATCTTGCCAA
ACACCTAAAGTCTTTGTAGACTGAAGAAAATAAACAACAGTTTTGGACTC
TCACACAGTCACACAGCATTCTGTCAACAAGCAAGAAGTGAAGCAGCCAA
CAATCTTGTTTATAATGACAACTTTACCTGGTAAGAATAGATTATTGATA
GGACAGGttcaggggggggggaggtCAAAGTTTTCTGGGTATAAAAAAGC
TGGTAGCCGTCACCCAACCAACCCTACAGCCCTATTTTTTCGCAATTACA
ATGCAGCCAGTAGCTTTAGCAGACTTTCATTTGAATTGAGCCCAAAATCC
AGTTTGTACCAATTTTTTCTCCCGATTGCTGGCAGGCAGGCTAGCTAAAA
GTAGGGATTCAAactttgaatgaatttttcaaaaaatctaattaacttac
gactttcaaataaaaggaaTATGGTAGACTAGatatagtcatctggggta
attgCGGGACGATTTTGACTTATTTGGGCATTACTCTGAAAAAGTATTTA
TCCTCAAGATCcgatcttttgatattttattcatCAAAAAGTATGACCTT
GACTCTACACACGATTTATTAcagtgaagtcgggtaacttgcatcagtgg
aggcaaacatgcatagccctcaaagaatgacctgtctggcagttacatca
aaatgcctcgaaaatgtcaatatgaaaattgcgtaatcagNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaggccg
agacaaactttcaataattggattgtaacatcgagttaagtctcttttgt
taagtcaccaggggtaaataaaacagaccttgatacatttatccttcgtt
tcaacttgacgattcgttcaAAACTCAGCCTcttaaatatttggggtagg
taaaataaacaataaaatataattaccctttccaaataaacctcttcggt
gacGAGCGCAGTCTACTCTGACTTAAttataaaatttatgtgatgggagt
ttgacgtACTCTCTGTGTATTTACATTCgttgtaatgtaatgttgtttgg
ggaattatgaagttctctggaatttcgattgcatttattcaggttgattt
tttatgacttctaatggtattttttctaacgagtttgattaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctctgttc
tcacacttatgtctttttttttgcgtccttttccgtgattacttttattt
atatttttaaagacagataagaaggcatattgatgtaactgtctggtatc
attaaaattaaagttaaatgaaaacaaaaattgtagAGTAGAGCCCATCT
GCCCctttctgacaaaaagaagtAACCCACATGAAGTCAAATTGAGAAAA
TCAACCAAACGCGTTTAATGCTGGCATCGAATGCAGATAGTATATATCAA
AAAACAAATGACTGATTATTGTTCTACTCATTGAAGATTAGCATCACTGC
TTTTCTCACAATGCTCACTGTTGCAGAGGAAAACAAGACCCTTGTTTTGT
CAGTAAACCTCaaccaaaagaaattgaagaaagaagTAAATGACCagttt
tttgaagaatatttctgacaaaaggaagtaagtGATACctttttctgaca
aaaagaagcaaaacagtcatttacttctttttgtcagaaaacatTCTCCA
GAAAACTGTCAGTTACTTCTTTATTCACCCTTGGGAAGAAGTTATATCGG
Atcgcccaaagttaccttcatgtttttattttattttcttatctctgatc
cagtctttcttttttctgactgtctgagtttctgagacttagttttcAAT
TCTGACTAAGTTTTCATACCTGTATCATATTTTGACCAACCACATCATCG
CACCATGCGGGGTTTGAACCACCatcaaagaaagaccttcggatTCGGAT
ACCAACGCCTTATCTGTTGAGCCATCGTCGCATAGCAaaaccacgcaatt
cataacatattataccgaactggcaaaagacgggggcaatgatattataa
tatgggtaaaagtaccccttttttaaacctgactgaaattcgagccgtta
ctagcaaccctgcgaggcccaaggcgccgagtatgcacccggcacagtga
caagccgtaaCTAGCAACCctctaactgttagttaatcaattccaaacaa
caaaacccccagAAACACAGTGGGGTGAccatcagcgatccgtggataag
aaaatgaaataaaaaagtgaaggtaactttgggcgaTCCGATATAACTCA
CTCCACACCCTTGGGGTAAATATGGGAcaggtataaaatgttattgaaaa
atccAGATATATATATTTCCAAAAGGTCATGATATTTGGGGTTTTGCATC
CACTTGATGACTTTAAATCCAAGTGCTATCATTTAAAGGAGTTTCAACAA
AATTGGTGACAGTGTCCCATTTTTACCCCAGCTTTTTCCCCATTTGGGAG
TAATAACAGGACACTTCAAACAGTGATATTTGTATAGAGCAATCTAGACC
AACTGAAGTAAATTAGATGCAAACCTTTGCAGGTTTTGAAAGACTTAGAG
TGTAGTTATGATTCCATCAAGCtagaaaatcaagtttgtagttttcttat
aaaaaataagcaCTTTTTTAAACTCAAACTTTAGTGTCCCATAATTACCA
CAAGATTAAGATTTGACTACGGGGTAAATATGTTCTTGTTTGATAATGAG
ACTATTATGATCTCAAACCATAGTATCTTGATGTCAGAATTCAGTCAAAA
TTATAATCAAAGTGATTGCAGCTCTTCCTGACACTAAAGCTTGAAAAAGT
TCCTTCTAAAActacaaaattttatttttatgatcacatgtgaaactttt
gttgaaacatcaaaagtatatgCTAGAATGATCTAACTAGACATTTTTCT
AGCCGCTAGAATGACctggtcaaataaaaaatagctTTTTATTAGCTGta
aggttaaaaatatttataagtTTTTCCATTCCTTATCCATTATTTTCATG
AGATTTGTTAATTTgttaatatttaaaagttcaacagaagtctgctctcc
tccacacGAGTCagagttgttcactcggtggcGATTTCGCGAACCCCTAA
TTCGACAGTCTGtcatttttacagctcgaacactgcgatggagagcgatt
ATCTTTGGTGGAAATGAAACTTGAAACATGTTTTCTACCATAttcctttt
atttgaaagttgtaagttaataaaaaattttgaaaaattcaatcaaagtt
TGAATCCCTAATCCCTAATTGCGAATCCCTAATCCCTAGTTCCGAATACC
TAACCGAGttatttttaataataaaaacGTGATAGATTATCTTGTCTCTA
AATAATTGTTGTGGGGTAATTAGTGATTTGATAAGCTGTAgtgttctcca
aaacaactaTATAGTTAGCAGGTTTCATGAGCTTTTCTATGGTataaatg
aagactctccagaGTATTGGCGATgatgaagaaatagaagaaaaattaag
aagTGAACCCTTGGACAATAGCTAGATTGTTTCATTTTGTTCAATTACAA
ACACTTGTGAAAGCGCCAAATATAATTTTAGGCAGTGCTAAATTTCTGGA
TTTAACTGTTTTACAATGATTTCCTAAGTGAAGAAAATATGGTGAGGCAG
GGTAATTTTGGGcctcgaaaaatatttttttcaagaaatttttggCCCTT
TAGAAGGTCCGAAGGTGGGAAGAGAGTCTCAGGTCCAAGTCTTTAAAGTC
TTTAAAAAGCAAATTGCTTTCAGTGGACGTTGATGACGGCCCTTTGCAGA
CAGAAGCTTCATATGTAGTATATTTCATGCTCTAATGAATTTGAAACGAA
AATTCACATGCAAGATTTCTACATCAAATCAAGGACAATCCTTGGTTATC
CTTTGGACAAAtcaagaacaaaacaaaatacaccTTGGGAGCAAAAATCC
CTGGATATCAGGGATAAACTGAAATGTACTGGAATTGTACTTGATTAAGA
AAACTCTATCCAAAAGTTGTCCTTGATTGTACTTAGCTTAGATTttacaa
gtttgtgctgctccagATTGTCTATAGTTTAtaccttttttttatttcat
tatacTCTTAGAAATTTAGGGATAATCCTGGTTTTGTATACCATGGATAA
TTTGtgtaaatctttttttaattcttgtaaatgtttttgttttattcagA
GAAAGCGACAAAgttctttgaaaatgtttctcTACTTCAATCATTTCCTG
TATTCATTGGATACCTCCTGATGATATTATTGATCCCAGTTTGGAAGCGC
ATTCTTCCAGTTGCGAACAATTTGAAAATGGTAAGGATTTTTTCATTTGG
GAACTGTTTAATTTTGTTACTAGTTACTACTTATTGCTAGTTGTTATTCT
GTTAGTTAAAATTTcccaaaagaaaggaaaaaataaataagaaatagtac
acgtttttttataaaacattcaaaatttttgaagcctttggatgttctta
actttttgggcttaaatgtttctaaaatgttctcaatttcaccatttgtg
accatttttacctattttggccattgaagtcttatgttcttatatagttt
gctcttataaaaaacgtgtgatGGGATAAAACTCTAATTATAAAGTATAA
TTTTCTATGATAATTTGGAATTAAGAAGAGATTCATCTCGTGGTACTCAT
TATTCTAAACTAGAAGTAAAACTTGATGGTTTTAAAAAGCAAtatgacac
ccccttctcacagacccggtggggtcttttatcagccagtgggggtaaaa
taaCCCCGGAAAATAACGGACAAAAATTCgattgggattgatattcccat
cttttttaacaacattttttggGACCTGGTTCCACGCCGGTATGCATCTG
TCATAAAATGATTGTGTTTGCACACCCCTTAATCCATTTTATGATAAGCA
TACTatgtctggatgctttgagaacttcaGCTTCccaaggggcagacact
tgcttataaaaaaacatgtattgctTCTTTCTTTAAGATTATGATACCTT
ACAACATCATCTGTGTATTGTTGAGTTTGGCTGCAACATTTCTTCNAAAC
ATGTATTGCTTCTTTCTTTAAGATTATGATACCTTACAACATCATCTGTG
TATTGTTGAGTTTGGCTGCAACATTTCTTCTCTTCTATGGAGCTTTTTTG
GGAAGTCATCTTTATGCATACGAAGAGAACCAATACATTGTATATGGCAT
GGCAATTTACACTATCTCAAAGAATGTTGAATTGCTTGACACTGTTTTCA
TGATTCTACGACATAAATATCGACAAATTTCATTCTTACATGTAAGTTTT
GGGAGGGTATGCTTTATTTCATCAACCAATTATATTGAACTAGCCGGTTA
CCCggccggcgtcgcacgccggttaagctgtacgccctaaaagtcctttg
gatgttgaagctggcttaaaaaaacgatcaaatgaataaaaaaatatctt
caaagtttgactctaaacCTTGAACCCTTCCCCGGAGATCTAATTTCTTC
TTatgctttttatcgccctttgaatgctgttattgttcgacaaacttttt
aatttttatgttttgatttacatttgaaatgttcttttctataaaagaaa
cttattttgttttgaaaagaattcgaatgtcattaataaataagatcgtt
tacattcgaaaacatttcaaacaaaagaaaagagaaaaacaggatcGGAC
AAAGCTGggaagaaattaaaattactaaatgtagatgtgccttaaatttc
gaaacaaaggctgaataaagtctaaaccaggctctgtccgacctgtcaat
caaaacaaacttatcgagaacaaaacattgcttgcgaaatcgaaagtgac
acacaaacagACAgaacggctattaatatatagattcaGAGTTTAACTTG
GAAAGGGACATTGCTGTAAATTGATTTTGGATTTTAAACGCCTCATCCAG
TTTATAGGGTACCCCCGATTCCACCATTTTGTCAATCTTTTCCCCACAAC
TTCGAAACAAGAAGAAATTTTACCACGGAAAGTTTCtttgaaattgaaga
ttttcatcAACAATTTGtagataaaattattttttcagacAGGGAAAAAC
ACCATACATTTACAAGATCTTTTCTTTCGCTCATTTCTTTGAGCATTATC
TATTCTAAAAGTAGAAAAATTAACAGATTagttaaataaatcaaaaaata
taaaccagaaattcaaaattattttgaatatttttgggaaaattctaTTT
CAAGGGACATtaacttttcaaataatttctaATTATTAGTTCCCCAATGA
ACTTGATTAATCATAGATTCTCCTTCTTCCATTTTTAGGTATTCCATCAT
TCCACCATTCTTGTTTTGGGTAATTATGCATTTGTTTACACATGTTACCC
ACCCATAGCTGTACCAGTCGGGCTCAACTCACTTGTACACGTCCCCCTTT
ATGCATATTATGCTAAAACAGCTATCTCACCTTCACTGCAAGTTTCATGG
AAAAAAGCGCTAACCATTTTTCAAATTGTCCAATTTTTATTTGACTTGGT
TTTCGCGACTATAGGGTATTTGTATCATGGGTTttgtatttattcaatca
tGTATGGTGGTTCTATGCTGGTTTTGTTtagtaatttttattattttgct
tACATCAAAAAGAAGAAGACTGTTTAAAGAAATACGttttaaaaatatga
tttttgttgatttgataAACGACGGTATAATTCGTAGTCTCAATCGCAGA
CCTGGCCTCTATAAGAAacctttttcgctagaggatgagcagaagcctat
ataagggggggcgtacgggatttgctatttccgaaataccgaataatttt
gctaaaatttccgaaattccgtaaaaaaaatACAGGgtcgatttccgaaa
ttccgaaataccgaaataccgtacgccccccacataTAATTCGATACTTG
TATGCTTGGAGAGCAGTTTATTTACTTCTTTGGAAGTAGTTTATTATCAT
AATGTACATATCAAACATAAAGTATTTTCAACGATATCACCATGAAGGAC
TTACTATTAAGTGCCAACACGTATATATGTGCGCATTGACCTCAGTTTGA
TAGAGTATTATTCCAAGTATTCAGAGGACCAATTGTAATAGCAATGAAAC
ACTCGTCCCGGGGCTCCAAAAGTCAAAACCAGAATACTTATATTCATCCA
AGTAATAGAATAAGCATGCCAAAGTTCAGTCATTACCCTAGGTTGGtgta
atgtcgacatccctcttctaatttcatcacccttttttagagataggaat
aataggaaggtcagaatcggtgattgaaactaattttctttgcttatcAA
TCAGTCGATGAGTCcgtcagtgattccgaccttcctattgttcctatctt
taaagaggggtgtcgaaattagaagagggatgtcgacattataaaattga
gaattttcacatgaaaaaatggctcaaaaggacaaatacttcttgtattt
gcttgaaacatttgtcctttaacttttagcaggctaaaaagtgccataaa
agttacatcttattcaaaagtttgaagttttacagattttctattttgtc
aagaatttttcgcgagcataaactttcgcgaatggcccttcctagaattt
ttaaagacatttactttcgcgaaaggggccaaaattcgcgaaaattgtga
aagtttctgctcgcgaaagtttgtacgcctaaagtagcgTGCATTTTTTA
GTCGGTGCTAATGCTAAGTTGAATTGTTGAATTTTAGGATTAGGGATTTA
CAATATATGAATAATTCACTTAAaacttttgtttatatttttctatataC
AGTGctaggaagaaaattttatactCAGACTGTTTTTATACATAACAGGA
TTTTTATAAAGGACAATTTTTGAAGAGAAAGATTCACAATGTAgaagaaa
agattgaaaattacATACTCAGtaaaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004260TCONS_00004260Clytia hemisphaericatranscript
TCONS_00004261TCONS_00004261Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004261-proteinTCONS_00004261-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:762112..770439 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.53	7.07	3.93	3.06	12.63	8.63	12.93	16.31	12.46	12.73	16.82	10.39	10.57	11.14	8.66	10.31	10.57	8.92	4.58	6.87	12.07	12.35	14.39	14.45	8.18	12.62	11.98	11.63	13.68	13.28