XLOC_003560 (gene) - C. hemisphaerica

Overview
NameXLOC_003560
Unique NameXLOC_003560
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000066:6017..9998+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003560 ID=XLOC_003560|Name=XLOC_003560|organism=Clytia hemisphaerica|type=gene|length=3982bp|location=Sequence derived from alignment at sc0000066:6017..9998+ (Clytia hemisphaerica)
TTANACTGTTGACTCAAGGTGACCCACAAACTGTCCAACAAGCTGCTCAA
ACTGTCAACCAACTTACCAAGAAGGAAGCCAGTTGCCATGCTGTTATGAA
CAACAATGTGATGGTAACCGCTTTGATTCGTGTCGCAACAACATCCCAAG
ATGCAGATACTGTCAAGTCAACTGTTGGTGCTATGCATAATATGTCCCAT
CATAAGTatgttcttttaattatttttaattgagGTAAAAGTTAAACTAC
AAACCCATCTTTAGTAGGAATCTAAGCAAAAGTAACTACTAAAGATGTCG
TAACTCAAACTTGTATGTACATAAAATAAGTATACTGAGAATAATTGATT
GTACATATGAGCATTTTCTTtaaatgaaaatgatgaaaattatgGTTACT
TTTCAGGCAAGGTTTATCTGGAATCTTTAAGAGTGGAGGTATTCCAGCTT
TGGTACGTCTTTTGGGATACNGCTGGTATCCTATCCAACTTGACTTGCAA
CAATCCACGAAACAAGGTTCGTTTGCTTTCAATTTAACTTGAGCCAAAAG
GTATCTTTGTATGTTTCCTAATTATTGATACTAGAGATTTGgtcctaaaa
aaaaacaaaaaatgatgcGATATTGCTCTTTGAAATAANTATCTGGAATC
TTTAAGAGTGGAGGTATTCCAGCTTTGGTACGTCTTTTGGGATATCGCAT
TGAAGCTGTTGTTTTCTACACCATCACAACACTTCACAATTTGCTTCTTC
ATCAAGAAGGTGCTAAGATGGCTGTTCGTCTTGCTGGTGGTTTACAAAAG
ATGATCCAACTCTTACATAAAACCAATGTCAAGTTCTTGGCTATTGTTAC
AGGTAAATAACTAATTATCTGTCTGTGTCTTTAGTATAAATCCTTCCTCT
TGTCTTCTTTTTGCTCAAATCTCATGTGTTAAATAAGTTGGTAATAAACA
ATTCATGTATTTACATTGTATTCTTTCATTagattgtttacaaattttgg
cttATGGAAACCAAGAATCGAAATTGATCATTCTTGCATCTGGTGGACCA
GCAGAGCTTGTCCGTATCATTCGAACATACAACTACGAGAAATTGTTGTA
CACCACTTGCCGTGTCTTGAAAGTATTGTCTGTTTGCTCGAGCAATAAAC
CAGCTATTGTTGAGGTATGCTATCATTCAATTCTTGTTGCTGTTTTTTTC
AGGAAATGCCAAAATGCTCTTTAAAAGCGCAGTGCTCCTTCTAAGAAATA
GACAATTTAAAAACCGGATGTAGTAGNCCGATTCGTGATCAAGGAGGATT
ACCACGTCTTGTTCAACTTCTCATGAAAGCTAACACAGGTTAGTGCCTTG
tatatcatttttttctgagcTGTTCTGAGTATACTCGTGTAACCTTTATT
ATAAAGAGGGGAAAATGCTCAATGGCTTGTGATATGGCAAGTTTCTGTTT
GAGGGTAAATCAACCGAAAGTAAGCTTAAAATGGTGGTCTAGTAGTTCTT
TAGATAAGTTCTTTTCCATAAAAATAGAACTTTGCTTGTTATCAAAGATG
AGGAAAATTGGAAGTTGGCTAGTAtttgaaaactttgtttttctttccac
TACTTGTAGACATTCAACGACGAGGTCCGGGAGCGCAAAGCATGCAAGAC
GGTGTACGCATGGAAGAAATCATGGAAGGAACTGTTGGCGCTTTACACAT
TTTGGCTCGTGAATCACTCAATCGTACCATCATCCGAGATCTGAACTGCA
TCCCTTCTTTTGTCCAGGTATTATAAAATATTtggatttaatttttattt
cggCTGAACTTTAGACCAAGCGTTGATCGATGAAAATGATGAATAAATAG
AATGTACATCAGGCACAATTTCATGGAGACTAAAACCaagttattttcaa
ttttcaaaaatgttgactACAATATCTAAATGCAAGGTAACGTTTTGTAA
CTTTCGCCTGatttaattttctctttttatctTCTAGTTGTTATACTCAG
ACATTGAGAATGTTGTTCGAGTAGCCGCTGGAGTTTTGTGCGAATTGGCA
CAAGATAAAGAAGGGGCGGACGCGATCGAGCGTGAGAACTCTACAACCAT
CTTGACGGAGCTCCTCCATTCGCGTAACGAAGGTATTGCTGCGTACGCGG
CCGCTGTACTCTTCCGAATGTCCGAAGATAAGTCACAAGATTACAAGAAA
CGTCTGTCCGTCGAATTGACCTCCTCACTATTCCGCGATGATATGCCATG
GGAGGTAGGTTTCCTGTCTATTTCTTATTTAACTTTAATATGATTTATTG
TTGTTTTATATAGTAACTTTTAATTCGTAGAATTTCCTCCCCTTATCCGC
ATTTACCATGACGACTCGCCTTATGATTAACCTTCAttgcttaatttttt
ttgtttattttcattatGAATTGCATCATTCAGCAGATAATTGCTTTTTA
ATAATTACTCTCCGAATCATTGTCTTTTTCGATCGTCCGTGGAGATAAAT
TCTCATTTTTTGTGGAAAATCCTTTATATATTATACCGCCTTTGGGGTAG
AAAAACCCTCGGATTATTTAAGATAATCTCTTGAAATGGACGGGTTTTAT
CATAAATACTAAAGTAAAACTGCAATGGAAATACAGCTGAAACTTCTTGG
GCTCGGGACTTTAGAGATTCTGTAAAGAAATTGCTAAATAAAATTNAAAA
CTGCAATGGAAATACAGCTGAAACTTCTTGGGCTCGGGACTTTAGAGATT
CTGTAAAGAAATTGCTAAATTCCTTTTAGCCTGGAAATACGGAAATGGCT
GACTTGATGACAAGCCAATCTTACCAAGACGAACTTTACAACCCACATTT
GACAACGCAACAAAGTCAAAACACTTCGATGCAATACACTAACTCCTTTC
AACACCAAATGTTTAATCAACAAAACACGCCCCAACCACAGGGCGGTCAA
CACCCTTGGTTTGAAGAAATGTGATAGTGCTCCGTGTTGTTTCGCAATAA
CTATATAACACTATTTCTGTTGGCAAAGGAATCATTATTTTTGGTGCTAA
TTACGATTGACTTGAATTTACAAAGCGGAAGCCAGATGATTTCCAATGCT
TGTTTGTATTATAGTTGTGTCTCATTTATGAACACTTTATATGTATAATA
TCCCCAAGAATGGCCCCACCCTTTacatttaaagttaaaaaggcACAATA
TTGATATATTCACCACTTACACCTGTGAGCAGACCAATTCTAATCTTTTC
TTGCACGGTAGTCGCTTGGTGAGCTCAAATAAAGGAATATTGAGAAGGCC
gttttgatatttatttttgtaacACAGTACACGTTATATTACAGTTTCTT
CTGCAAAATATAtcccaaatttttagttttatgtgcgtgtctagttttta
agatattttatggattttaacttttttttaaagtaagctttttgtctttt
atttttcttatactttttttattccTCAAAAATAGACCAATTGAACTTCT
AAATCTGTTAGCGTAAAATCTAAGCTTTGTTGTATTTAAGTTCTTGGTAC
GAATCGTTACATTTCTCTCCAGTGGTGTTTGCTTTCGTTTTCTTTGAAGC
CACATTTTGTAAGGTTTTACCTTTACCTGGCCTAATCTCACTAGACACTC
GGTTTAAATGATCAGAGTTTGGCTTGGTCTATGTTTAATCTACACATTGT
ATAAAATTTTAAGCATGATATAAATTTTCCCctatttttagttttataaa
CAAACCCTTTCGTTTCTGAAATGCAGAGAGTTACATTTTAGTCCTATCTG
CACTtcatttattttgtttgtaatatTTTTGCGTCATATCAATATTTGCG
TCCATTATTACACGCATGAGTGACggttttattttttagtaaATATGATC
CTGTACTGCCTATACTACTCTTACCTTTATTCTTTAttatcttataaaat
aaaaaaaaccgcaCTGTTGTTGCAAAATTAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006214TCONS_00006214Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
beta-cateninTCONS_00006214-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:6017..9998 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.79	5.86	7.92	9.02	459.53	336.41	342.91	360.63	193.31	262.03	155.22	191.31	223.08	221.99	140.09	148.25	192.61	220.64	181.54	226.98	165.56	170.51	67.77	87.76	101.21	108.29	266.64	269.64	129.3	140.37