XLOC_032505 (gene) - C. hemisphaerica

Overview


Name	XLOC_032505
Unique Name	XLOC_032505
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at scaffold_200:30338..44889+

gene from alignment at scaffold_200:30338..44889+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_032505 ID=XLOC_032505|Name=XLOC_032505|organism=Clytia hemisphaerica|type=gene|length=14552bp|location=Sequence derived from alignment at scaffold_200:30338..44889+ (Clytia hemisphaerica)
NNCGaccaaaaaatgattttctaatCAGGgaaaagtttacaaaaatacTG
AACGGCTCGCTGATAGGTATGAAAGACATTTTTACTTACCCCTTAGCGTG
CATACGACCCATCTTGAGTTCTTGTTGGCTTGAAACGAAAGAACGATGAA
ACGTGCAAAGATGTGAAATCCTTCAAATAATGTAGCCGTGGTCATGCTGA
GAAATTCCATCGCCCTGTTCTCCTTCTTTGTTATTCTTTGGTAAGACTGA
CCACTTCGACATTCCATTTCTCTAGAATAAAAAGTTTGTCTTTCTTATCA
TGGTAGACGGGCTAACCTGTTTcgaagattttcgaaaaagctACCGCGCG
GGTCGTTGATTGGTAAATTCAATGTACACTCAGGTGATCGCATGAATAAG
CGAAATTGAAAGCGGGAGTCAGGAGTTTATTAAAAAAACCTGCACTCTTC
CAAAAAACacaatcaaaattttatcataaaCACTTTTCAGTAGTGTTAAA
AGATGGGAGAGAGATACAGCTTCAGTTTGACAACTTTCAGGTATGTTAAC
TAACTTACTTACTCACAGCATAATTCAAACCCTTTTCTGGAAGGAGGGGG
GATAacctaaaaatagaaaaaccagCCAGGAAGACGACCCCCACACTCAC
ATCACCCACTCACTGTATTGCCTGAACTTACTTCTCAGGCCACTTGGcga
ttttgaacttgaaaaagtgTTGAACATGACCCAAATCTTACCTATGGCGT
GCATGCTGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNgaataaaatgtaacttttatggcactttttagcct
gctaaaagactaataagtcaaaggacaaatgtttcaagccaatccaagaa
gtatttatccCTCTAAGCCATGAGGGACATTGAGGAAATTCTCAATTTCA
GGTCTTGATTTGCGAAaatttatgctcgcaaaaaagatttttccataaaa
tttgcgaaagtaaatgttgtgaattttgcaatttttcgtcCTCTTGAAAG
TTTCTGGTCtggaaagtttgtacgcctaaaagTAATCCCTGGAAAATCAC
ACATTAGTATAAAGTACAGAAATTAATTAAGTTTGGATTGTGTAAATCTA
CACCAATCAGTAATGTCTGTCTGCTgtaatcttcaaatttttccaattaT
CTTCGTTATTAAGAAATGAAACAAGTGCACTAATTACTACAGAGCTAATG
TAGTAAGCtaagaattttcattaaaacgCAAATGTGTTAAATCTGATAAG
ATTTCGTGGCACAAGGAAGATACAACGGCTGATACAAGAATTTATGCGGA
AATATTTTCCCGATCCCCCAAACATTCAAGTAATTCAGAATCGGTTGACC
aaactttaactttttttgtctTGAGAAACACCAAATTTTAAAGATCTTCT
CCACTTAGCCTGGAGCGACCAGTTATTGAGGAAGTCATTGAAATTAACTT
CAATTATCAGACTGAAACCAATAATGATTCAAAAAATCAAGCACTTTTGG
TGGACATCAAACATAAGTGTTGGACATTTTCAAAGATTATAATCAAAGCA
ATCAAATTTTACCTTGGATTTACCAGCTTGATAGAAATTCATTTTTGTGT
TCTTTACGTTCTGTTTTTAATTGCTTCATTGCCTTCAGTTTGGTCCAATT
GTTTCAATTGTGAATTCTGATTGAGCAAAATTATCTGGATTATATACGAT
ACTACAATCAGCATCATAATTGACCAGTTTTTAAGGAGGATGAAGGGAGC
CATCCAAAAAACCCTGATTGGAGGGGGAGGTTTTTTTGAAGTATTTATAT
TGAGATTGCTTCCCTGAAATATCTTTGTGTGTAATTGGAATGATGGTTGA
TTGACTGCTATTTTTTGCAAGTTCAgaaatgttttgtttcttcATCCCAA
TTGTATTTTTTCATTGATGCTCTATTCCCCATAAATGTATATTGCTTGTT
ATAATATGATAATATTGTTTTTTTACAGCCCTTCTGGAAAGCTTGTACAA
ATCGAATATGCTTTAGCTGCTGTAGCTGCTGGTGGTCCATCAGTTGGATT
AAAAGGTCTGTCATTCGTATAGGTTTACAAGAATTTATTAGGGGAGGGGG
TAGAATTTTGGCGATGATGATCGCCACTTCTTAATATAAAGGATAGTTCA
TATTCTTTAATTTAtcttttctttaaaacaatctgaattgaaaaatgaaa
aacatcaaGTAACATCTGGTTTGAGAtcgattttaaaatttgatttttct
tgattaTTCCTATTTgatctcattttttttattcagcCGTGAATGGTTCA
GTTATTGCTGCagagaagaaacaaaaatcaatattatacGATGAAAAGAC
AGTATCAAAGGTATTATTGCNTATTCAGCCGTGAATGGTTCAGTTATTGC
TGCagagaagaaacaaaaatcaatattatacGATGAAAAGACAGTATCAA
AGGTATTATTGCTTTTACTCCCTAGAAATTCATTCTAATAATTTTAAAGT
TCAAATGAAAATGTATGACTTTGCCCATGACTCCTGTGAATGATAACATG
CTAATCATTAGCGGACTTACCTAGAAGCCCGTTCCTGGCCAGTGATCTGA
TAAGGGGGCTTTTTTACTAGCCTTTTATGGACAGATCGAGTATTTAAAAG
ATTCCTCCTTTCTAGCACAATTAATTTTACATTTTGATAAAAGAGTGATA
TTCAGATATCAAATATTTTTGCCAATGGTATGTCCATATTTGTTGGATTT
CAACGGTAGGCAATGTCCAGTAAATCAcataaaaatgagaataaaaTTAC
ACTCAAGAACATAAAACGCTTATTAATGATCTCATTGTGCACTTTGTATT
TCAGATTGAGATGATAACAAAGCATATAGGAATGGTATACAGTGGGATGG
GGCCAGACTTCAGGTAAGATTatcaaaaaaccaaaagtatAAAGAATTGA
CTTCACCATTTCCTTGTTATTCCTTTTAATGGACCTACTTGGAGTtttta
acctgtgttcgtctgTTCATCTGTTCGTCcgtttgtctgttaccagcttt
tctcgggattgaatcataggaattttgtgatttttttgtacaaaggtGCA
GATTGGGGATTGCCAAAATGTGACCGAATGTGacctgagcccgattttcg
aaaacaaatttgGGCTAATTTGGgtcaaaaatagggttttttggactttg
tcaaaaatctgttcattagtttttcctaattttttgaacGAAGACGTAGA
ATTACAGTGTGCTAAATATGAAAAAgctcatttttcgaaaaaaatttgag
ccCAACTCTGCCCAACttgcaaaattttgaattattcaTAAAACTTGTTG
TCTTTCCCTTTTATTGTTAATATAACAGATTTTCAAGATTTAttttatgg
aaaaaaaaaatttcaatctttttaaaaGGTATCCCGAAATTCgtaaaaat
ttcgaaagtttttaCCATTAAAGTTAACCATTTATTTATTACAAAATTAA
CTGACTTATTTTCTTGTACTGTTCAGGCTGTTAGTCTCAGAAGCACGTCG
AATTGCAGTCAATTACAAACTACAGTACGGAGAATCCATCCCAACCTCAC
AACTTGTACAAAAAGTAGCTTCTGTCATGCAAGAATATACACAATCTGGG
TAAGTTTTTACCACAACCTCAGACGGACCTTGGAAAACCTCGAAACCTGG
GAAATGAAGGTTTTTTTACGGAAATCTCTTAGGGGAAAAACCAAGGAAGC
CGAGGGAATCTCTTTTCAAATTGTTGATAGCTCAGAGAAACTTCTTGTAA
CAAAATGGCTTGTATTTTGGGGTGGAGTATCTGGTACTTGCAAAGTTTTT
AACCTTTGGGTTTACCATGTTGACCCATCAGAAGCttttaaaattagaaa
ttgattagaaggctttaatctttttttttaatttcggccTACCATTGTGG
ATTATCCTATCAACGTTGAAGCtataaaattaaaagaattatacAGAAAA
TCTTCAGAaggcatttaaaaaaaagtattttcaaagCTGCCCACCAGCCA
TTTGTTGTTCACGAAACTTGAAAAGTACATTATTCAATTCATGCTTAACT
CTGAATTTCATGTGATCTGGAAATGTTTTCAATTCAGAAGCAATCATTTG
ACCGAAAATATCATCTGGATGAGTGTCGTGTTGGGCTGTGGTGGATGTCA
CGTTATTATAAGTTTTCCTCCTCTCCGTTTGTGGATCCTGTCGCTGTTGT
TTAATTGTAGAGGAGGAAGAGAAAGTTTGTTGTGGTGTTTGATTTGACGT
GTCGAGATTCTCCGACACTGAAATAGGCGTAGGGTGAAAATTTGTAGCGA
CTGCTTCATGTTGATTTGAGTTTTGACTAGACGCTTGTTGTTCGCCTGAT
GGAATATTATGATTTGAATGGCGATGTTGAAAGCTCGGATTATCTAGTGT
ATTTTGGTATTGTATGGGTTTTTCGTCGAATATCTCTTCTTCTTGTAAAT
ACGTTGGATCCACATTTCCATAATGATTTGTATGGATGATGGTCAAACTT
TCTGTTGAATCgtcatctgattggttgaaatctTCATCACCATGGTTACG
GTATTGTCCGTCTTCTTCACCACCCGTTATTTGGTTCCGCCCTTTGTATT
CTCGTAAATGTTGATTGAACCAATGAAAGAAATCGTATGCATCCAAATCA
CGTTTCGTTTTCTCGATTTCTTTCAGGTTTGCGTTACTTAATGCCTTCTT
GTAAGCGACGCGTTTACGGCTGTACCGTTTGTAAAGTATGACGAATTGCC
GTTGACCCATCCCTGAAGTAATAAAGAAAGTTCCagttaacaattttttt
tgtgtcGCCACTTTGAAATCTGAGAGATTCTATAAACTGTGCTTACgact
tctatatagtttttggtTTAGTTTTTGTACAACTTCGTGAACTTGCATCG
AGAATTTATAGTACTTTACGTATGATAACTGGAAAATATCGAAAAACAGA
AATTATATAGATGCATGACCAACAACCTATTCAGAATTATGGGAGAGATT
TCGTCAGATTTCgtccattttgttttgatcacTGAACTAAGTTTGCTTTA
AGTGTGTTACAATTCGCGTTTTACTTGTCCCCATTCAACCAACGCTTCAT
TTCTCTAACACATTACACATTTAATTGAGTTTCAGTGACTTGAAAATTGC
TTTTACCTTTTGGTAATTTCAATTCTTCATCCACTCGTGCCCATGCTTCT
TCTTTGATAGACGGTTTCTTGTAAGATGAAAGACTTTTATCGTACAGGCA
TGGATGTTGTCTAACACATGCTGCTATGCTTCTCTCCCAAACCAAATTTC
TGCTGTGAATATCCATTCTCTGagaaaacttcttttttgtttgttttcct
CTGAATCCGAAATCTCTCTTCTCGGCAATTCATATAGTACACAACAATTT
ggttgtttgaaattttttatcagaacagAATTCGCTGTTTCTTTTATAAC
ACACACATATGTTTCTCTCGAAATCACCACATCTCAATCTCACTATTTTT
TCTCATATCACACactactttttttttctcatgagAAAATTCTCTCTTCT
CATTTATAATAAATGAAAGGTTTTTTATCTCAATAATTTCGTCTCCTTGA
CGATGGATTAAATTACATAAGAAAGTTCATTATGTTATATGAAAGTGTTT
ACAGGAAAAAGTATGTGATTTCTTTTAGAAAGGAAGTTTGCTTTTCAAGT
AGTTGTCAAAAACAAATTGAGGAAATTGagaaaaggaatcttttcattCA
TGCGTGAATTTCTTTTCGCGtgattttcaacacttttatACAATccttag
gctacgtcatatcttccttcattttgaacattacacgttttttttttata
agaacaaactatataagaacataaggcttcgaggcccaaacatttaagaa
cattctaagaacattctaaggctttggagacNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacatttt
aagaacatttttaggcttcaaatccaaaaaactaagaacatccgaaggct
tcgaaaatttttgacgttcttataaaaaaaaaacgtgtaaacatTGACGT
GCCATATGtcgttttattattttcagggaAACAGCAATTTTTGCCATTAT
ATTAACTTTTTCAGGATGTTTCAGCATCAATAGGCCTCAATATTTCTTGA
CATCTCAAAGTCATTTTTTCGCGAAGTCTCAAagtcattttttaactttt
ccttttttctcaattcatttttaagcatttttatttcataaaaactATGG
AATattgcaattttttaaataaagatcCAAAACTGTCAGTCTGTAAATtt
gacatttatttttttaactgcCCCGATCGTGCAGACGACGAGCAAAGGCg
acaaaataactttttgagaAGTGATACTTGGAGATACCGTAGAGACATCG
CGAAAAGATGAATTTGAGATGTCGCGATAATTTGACTTTGAGATGTCGCG
ATAATTTGACTTTGAGATGTCGCGATAATTTGACTTTGAGATGTCGCGAT
AATTTGACTTTGGGATGTCGCGAAAAGTTGACTTTGAGATGTCGCGATAA
TTTGACTTTGAGATGTCGCGAAAAATGAATTTGAGATGTCGCGATAATTT
GACTTTGAGACATCGCGAAAATTTGGCTTTCAGACATCTCGAAAAGTTGA
CTTTAGGATGTCgtgaaaaatgaatttgagaTGTCGCGAAAAGTTGACTT
TGAGATGTCGCGAAAAATGAATTTGAGATGTCGCGATAATTTGACTTTGA
GACATCGCGAAAATTTGGCTTTGAGACATCTCGAAAAGTTGACTTTCTTA
GGATGTCgtgaaaaatgaatttgagaTGTCGCGAAAAGTTGACTTTGAGA
TGTTGCGAAAAGTTGAATTTGGGATGTCGAGAAAAAATGACTTTGAGACT
TTGCGAAAAATGAATTTGAGATGTCGCGAAAAGTTTACGTTGAAATGTCG
CGAAAAAAAGACGTTCAGACTTTGACATTCCGAAAAGGTTTTAATAAAGG
CCAGAATTGTTATAtccctaaaaataataaaacgaCATATTGCACGTCAC
ATTAAACTCCTGTTCTTTGGGATAtgcgcactgctcttgttttgaaaatt
gaatttctccggATACATCGCATGCGCGATGGCGTTCtgatgaaacaata
gagagtttcgagacctaagccaatcagctgtgttttaaataGGGGGAGGG
GGATGTTAGGActaattttttaccatttgtcaaaagttgcctttgggtat
aaaaagaagaaaaattcatgtaaaaacccTGTGGCacttttttcaaggtt
gccacGGGTAGGGTGCCACCACCGCTAcgccagcaaaatcgaaatttcaa
aaaaattttaaacatagcgaagtgacccctcatttgaaaggtattttcat
gctgattaagaaaatcaatattgtaAAGGTGAAAAACACTCTAACAAGAA
ATAACTTAagaaaaacgatcaaaaaattgcgtttttagcaaaattctcaa
aattttgccaacTGTCGGAAATTACTTTTTGTGACAGTGTTATTCAACCT
CATTATATTGACTTTCTcaatcagcatgaaaatacctttcaaatgagggg
tcacttcactatgttttgaaaatttttgaaattttgatgattaacatgat
tttttcttctttttatacccaaaggcaacttttgacaaatgggctaAGAA
TTTATGCCATTTTTGCAGAATAACACCCCCCCTATTGTAAACGTTCTTTT
ATTTatatctctattgataaacttcttttgttaaaaacttcTATTATGTT
TAATCTTATCAAAGGCAATATATTCGAACTGATAGCCAGGTACTTCCAAc
ttaaacaaattaaatttgtcaTTCGATTCGAATTTAGCTAGAGTTACCTT
ACCTTGAGTTACCTTGAGCTTCTTTCGTAATATCTTTACGCATCCATCCT
GTGAGGACcgatgtaaattttcatattgatgatGCTGTTTGTTTCAGCTC
GTCTCATCATAGTGTAGCCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ttttctaaaaatgttttttctttttctgaataAAATCTTTCGCTCGCGTG
GTatcttctgaaattttttagtGTTTGGTTTTCGTTTCGTGGCTTACGAA
TAATTATAGAATTCCGTAGTACAGTAATCGTTTTAGGGAAACCCATCAAA
GATATATAGCCATTTTATTGTCAAAAGAATAAGAACAGCTGTgctctttg
aaaaatttggacaatatttttctcgtttccaaatttccaaatagacgtta
ttttccaaaaatttgtagCCATCGACTGTTCTTagcatttttgagttttt
aaatgttcttaatttatcattttttgcaatttccttagaaatcgggtgtt
ttagagtccataaagcttttaaaatgttctcaacttgttcttgacTTTTG
GCGATTGAAGCCTTATCTATAGTTTGTAGATAATTCTACCGTTGAAGACC
GGAGTTAACTTTCAGATACTCTTTTTCATTCTAGGGGTGTCCGTCCTTTC
GGTGTATCATTGTTAGTATGCGGATTCGATGAAGAAACACCATCTCTTTT
TCAATGTGATCCTTCCGGTGCTTACTTCGCCTGGAAAGCCACCGCTATCG
GCAAAAACTACGTCAACGGAAaaactttcttagaaaaaaggtATGTTTTT
AAGGCCCACGTCCCTAAGTTTGCTTATACATCTTCGGAAAAGTTATACCG
TCCCATATTCGTCGATTTCTTCTGTATCGACACTGTTTCCACTGTTACAG
TGGAGCacatatattttcttttgtcaaTCCTTACATACCGCGTGTCCGGA
AAAAAGCAGAATATAATTATTATGTTATTGTTTTTTTCGTTTATTTATAA
AATTCGTTCCGCTTTCTTTCAGACACACTTGTACAGGGTCCACGCATAGC
CCGATACAATGTTTGCGGAAAAAAGCGGAACAGAATTTACAGTGATTTTT
GAGGACATGTCCATGTATAGCCATGTTAAATGTATTCTTTCCTTCTCTCA
TTTGTAGATACAACGATACGCTGGAATTAGAAGATGCCATTCACACAGCT
ATCTTGACTCTCAAAGAAGGTTTCGAAGGACAAATGAACGAAGATAATAT
TGAAGTGGGAATATGTGATAAAAATGGTTTCCGTAAGCTTACACCTAGTG
AAATAAAAGACTATTTAGCATCCATTCTTTCTTAATCTTTATTGGTGTAT
CGACCATTCTTcatactaaaataccaagtcaACATCGAATACTGGAATCA
GGATCCTGTCAGCCGTATGGATAAtcgatttcatttttcaaagaacGACG
ATTCAGAAATTCGTAgcattgttttttatattttcaaatatttaacgTTA
AAAATACATTGAAAGTGCGAATTATAATTGTTTTGTGTTTATTTCTCTAC
TGATTCTAATAAAATCGTGAATGAtgaatgtttcaatattttaagcAGTC
GGCCCCTAAAATGAAGGTCAAATTTGATTAAATTGACTCTAGCATCGCAC
CAATCACCGTCTGTTACTATTTTTGAATGATTTGGTTTTTTCCTTTCCAa
ag

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00051278	TCONS_00051278	Clytia hemisphaerica	transcript
TCONS_00051279	TCONS_00051279	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
TCONS_00051279-protein	TCONS_00051279-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_200	supercontig	scaffold_200:30338..44889 +

Orthologs

The following orthologs are found for this feature:


Ortholog Name	Description	Organism
PSMA2	proteasome subunit alpha type-2	Homo Sapiens

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
249.35	260.64	184.52	176.16	134.32	110.28	195.46	206.42	201.46	180.57	174.06	155.46	101.6	99.77	131.15	146.63	184.2	179.87	52.59	69.82	156.72	149.72	134.78	128.02	169.6	183.34	144.59	116.31	111.87	97.32

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XLOC_032505 (gene) - C. hemisphaerica