XLOC_033543 (gene) - C. hemisphaerica

Overview
NameXLOC_033543
Unique NameXLOC_033543
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_226:175730..183266+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033543 ID=XLOC_033543|Name=XLOC_033543|organism=Clytia hemisphaerica|type=gene|length=7537bp|location=Sequence derived from alignment at scaffold_226:175730..183266+ (Clytia hemisphaerica)
GCGCCATCCCCACACACCCCCTCCACGCCCTGTGCGAAAAAGGGAGGGCG
TACTTGATTCGAAGTATGGCGGAGTTATCGGCTACCGGTATTTTAAAAAA
CTGGATTGTGGGCCGCCCGCTTGAAGCTTCAGAATCAACGTGAACCGATT
CTTTTTACGAAGGGTTTACTCGTGTGTGCAGAGGCCAGCCAAGATGTCGG
AACAGGTTTGTTGCTTTACTTGTTATAAGCCCAATTATATGGATTTTAGC
ATATTCCAGTACCAGTTTGAAATTcttctttcacttttttaatTCTGTGT
GGCATCCGTCCAGTTGTTTATGCCCGAACGCCTAACCTTGGTCATCTctt
aaatttgtcaaaaatgtAAATCAGAAGAGTATTTGTTTCtaacattgggc
tcttccagaaaaaaattgatataggGGGTGGATGACgggaattttcagat
aaaaaaagcaatcggaaatccagtcaatttttcaaagtgcttcGGAAACT
ctgctcaattttttatttgaacccttggaaattccaccacataatttgtc
aaagttttgataAAGGTATtggaaattccagatttttccaccaaaaaatt
gattttgtatcggaaatccaggaatttcaaaaaaacattttgacttGGAA
TTCCGCTGTCGTCCACCCCCCTATAATGGACTTaaactggaagagcccat
tacatAAATAAATTAAATCTAAAATACTTCATTTTATATCAGTATAGTca
taaaggaaaattttgaattccTAATTTGATAGTCATTTCCTAACTACAGT
TAGAGCACATTGGAGGGTCTTGAACTCCCAAAGTTTTCTTCCTAAACCTT
GTCTATCTATATCTGTTTTATCCCATTCAACCTGTTATCCATGTTATtaa
taaacaaagaggaatgaattcGTAGGGGTGGACAAATTAACCAGGTCTGG
ATGTGGACGGCgaagtaaatattttttatgaaacttgtttttttttgtct
attCTTAGTAACgtaggattctttagattaTCCCCTCGAACCTACGATGG
TAATCACACTGCATACAATACACCTTTCcagtaattcaaatttctcagaa
aggGTCCATGAAAATCTCTATCACCAATCGTCACTTCTCTCACTATCTCA
AAAATCGCATTAGGAACTCTATTTTTCTTGATATCGTGTTAACCCTGCTG
AAGTTTTACTAACAATTAATTCTTTATCCTTTAACAAATCATCTGGCCCT
CATAGCATTTCTCACAAAATTCTTTGTCTTCTAAAGTTTGATCTCTCTGG
AcccctttcttttctttttaacctttcattTGAATCTGGTTGTTTTCCCA
CAATGCTTAAACTCTCAAAAGTTATTcccgttttcaaaaacaaaggctcT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATC
CATACCTTACTTAATATTATTGAACGTATTCGGAAATCTCTTGATGATGG
TAACTTTGTGTGtggtgtttttgttgatttgcaaAAGGTTTTCGATACTG
TTGATCATTCTATTCTAATTTCAAAACTCGACCACTATGGGGTTAGAGGA
AAGCTAATGACTGTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGG
ACCTCTCTTATTTTTAATCTATATTAATGATCTTCACAATGCAATCTTTT
CaagtgaaacttttcatttcGCTGATGATACCCATATTTTACATTTGAAT
GATGATCTTCTTTCCCTTTGCAACAGAGTCAATCGTGACCTAAGATCCCT
CCAAACTTGGCTCAAAGCCAATAAAATATCCCTTAATGCtggaaaaacag
aatttttaaattttcagacactgtcgaaaaattcttccttttgtcccttt
tcttaaaattggaggtaagaaaatttttcaaagttcaaaCATCAAATATC
TTGGCGTTTTGATTGACATGCACCTCAACTGGAAAGCCCACACCACATCT
TTATCAGCTAAACTTGCCAGAGCAAATGGTATTATATCTANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTACCCTGAGCTCATCTGATTTCAGTTTTGTTAAATCTCTCGCC
CTTACTCACTGTCTTGGGAGATACTGAGCACACCCCTCCCCtaccaagaa
agtttagaaaactttattttaatttattcttcattagataaaaaaaattc
ttaaaaatataaatatttataaataatttaCAAAGTGTTATAAACGCAAT
CTGTACTTAGGTGGCCTCATCTTTTTGATTAGCTAgactataaggcggtc
tccctccatatattttttgtgcatatcaccacttgtatcttttttgtagt
gttaaatggtaaataaatacttacttacttacttacttacattCCACCAT
TGtgtaaaaattgtttgggaTGTAAACAAATGTAATATTGCCTACAAGGg
gttatggaatttttttttttgatagcaatccttttttggaaaaagttttc
tGGGTGGTATAAAATATGAATAAAATAATATGAGAGGATTTTGATTGACA
GAActtatgtaagaaaatattaaaatcaactTTCCTTAGGAAATGCAGGC
AAAAACCAGAGAGCATCAAAACAATATGTTCATCTTAtcttaggcggcaa
tcacaaatattttcgtttcgcgttgcccgaccgactctcgaaaattgagt
agaattgagtctgtgagtcggtaaatttgtcggactttttctgccgatga
cgtttccttcgttcaaaaattttattaatgcCGATTTTTTGCAAGCGAtt
ctagcgcattcgcggcattttgactttgtttatcattacatgcgccattt
tgggttGTTATGGAAACctgaaaatttttacgaccgaccgactcactttt
tagacccaacgaggacgcgaaatgaagatatttgtgattgccgccttatt
aTTGTACGCTTATTGCCCATTCAGATCAATTTTTAGTTGCGCTGGGTTGC
GTATCATGCGTTTAAATCTCAAACATGAAAAGTTAAAAACCATGAAAAGT
AtgtaataaatatcaaaaacaaGAATACCTTAGTAAAATATTTAAAGATA
AGACAAAAGTAGTATAATCTAACAggttgttcatttttttttttttttga
tgtttggcAATGCCTTTTAGCAGAATGAATCAAGATATGAGCTAATTTTA
ACTGTTAATACAGCTTTTACCTTGTCAAGATTGAATGGATTGTGGATTGA
AAATGAATATGTGTGCCTTGCAAAATTGCACAACGATTATGATAGGAAAT
TTTATGTTGCTCTTTCAAGAACTAATTTAAATTAAATAGATGTAATATAA
TTAATAAACTTCCTTTGATGTCCCTTTGGGAATTCAGAAACTGGTTCAAT
CCTAACTCCTTTGAGAGTAAGAGAAATTTCCTTGTATGACATTTTTACAT
TTGATACTGATAACTTAACTtgtgattttttaacctttttagtCTTCATA
AAGGTGTGATATCTTAGTACAGGTCCTTTGTTCCTTCAGACTTTAGAGAT
GGAGGTGTAGGAGGTAATTCAAACGATATAactgatttttatttttctcc
atCTTCTTTTAGACAGAAAAAGCCTACCAAAAACAACCCACTATCTTCCA
AAACAAGAAACGTGTTGCTGGTAAAGTAACAAAAGCCAAAGAACAACGTT
TTGTCAAATCTGTTGGTTTGGGATTCAAAACTCCAAGAGaggtattattt
ttcttttaacctTTCAAGCTAattaaaatctcattttcacCCAAATTCTT
TATTTCCTAGCGTAgggtttttggcaaaaatttaggCTTTAAATCTAAGA
GAGGACTAAATTTAACGAAAATGGCCAGAATTTGGAAAATTCTCATTGTC
ACTCTCCTTCTTGTTGTTGTAAAAATTTCCTGGCTTGGGATCAATGACCA
TTGACGGGAActtatttttagtttaaaaaagagcatttctcaacttcagt
taagctagaatctgacaattaTGTATGtcaaactttggggcaggctggag
acttcaaaaatggtcagatttggctgaaacttGGCACACTTGATCCTCAG
GCAAATCCCTGGCAGTCGGTACCACTACATGAaaaaggcaactattgcct
taacgggaagtATTTCCCGAACaggaaggtgaaaataacctgaaaaggaa
actgtttccagattgaaaatttcatcacttttctgtttcccgttttggtc
aagaacttttcatcgtTCCCGAACAGGAAatagaatttttgtaaacaaag
cagatttttgtttcccgatcaagaaaaagtttccaaatagggaaGTTTTT
TAAATGGGAATAGGGAAAGAAGAATTAAGAAGCGATTACCCGGTGTATTT
CTTAACTACCTGGTGAATATGATTTATTTTCCCTCCTTTACAAGAGggac
aattttttaactttccaCAAGCATTTCCGGAGTGCTCAGAGGCcactttc
ccgatcgggaaactgAACTTCCCAATTTGGAAAGTGTAGTCATTTGGGGA
AGTTTTCCACCTTCCCGTTCcgttcaccttcccgttcgggaaatatttcc
tgTTAGGGCAATAGTTGCCTTTTTCATAAAGTGTTCCCGACTGTCTGGGG
TTAgttttttcattctttcaaaatttccattttaaaGGTGAGGTCATGAC
tgtggctgttttttttttttcatattttcaaaatttccattttaaaGGCT
TGGTCATAATTTTTAGCCTCACAACTtaggggcaggctggagacttcaaa
aatggtccgatttggttgaaattggttgcaattttacaattgggcttaca
aatgatttaaaaacactgaagttgagcccagtgcggttagcacgttcgac
tgCGCTCAACagtgtttttaaagttttgctTTAAAATAAACAACATTTTG
TTATTGAACATGGTGGGCCAGCCATGGATATAATATAGGAAAGAAATTGT
GACCCATTTTCAACGTCTTTAATCAGATGTTTAGAAATGCTTGAGAGTTT
TGTATTTTGggaagtagatatcctaactaaAAATTTGGTCTATCACTTGG
TTCTGTGATACTTAGTTCTTTAATTGTAAACTTTTAAGTCGTCGACATTC
ACTTTGCgataaatttgaataaaagtaTCAAATTCATACTAACAATCCAA
AAATTGCTTCTTATTCTGTCTTATTAATCAGTTTCTTTTTTCTGTCAGGC
CATCGAAGGTACTTTCATCGATAAAAAATGTCCATTTACCGGAAACGTTA
GCATCAGAGGACGTATTTTAACTGGAATTgttcaaaacatgaaaatgaag
AGAACTATTACCCTCAGACGTGATTACCttcatttcatcaaaaaataccA
AAGATTCGAAAAACGACACAAAAATCTTGTTGCACACATGTCACCCTGCT
TCCGGTAAGTTTTATTTCTTTGGGTTGGCACCAATGAAGTctaagcccaa
agggctagaatcgaatctttaacctttctcaggtaagaaaaagtgaagcc
tggaaatatgcgccgtatttttgacgacggatgattctagcgattccttt
gttttcgagtgatatcattttcgaaattttggtgtaaattttagtttcaa
tctgttatTTGTGTAAAAAAACAGGTGGACCGTGCTAGGCCGCGTAACTT
GAGTTTAAAGCCCTAAAGCGCTATTGAGAACTTTTTATCCTTTCTCCACA
AGGAAAAGTTTGAAGCTTTAAATTTATGCCGAATTTATAATGATGGATCT
ATGATGAATCTAGCCCTTTGTTTTTAATcggcatatttttcaaaatctgg
caATAGGTTTCACTTTAAATCTGGCGCTCAATTTTAAGTGTACGATAGCA
AGATTATCTTAAAATATCAGGCTGTTTGATAAGACTGGTTCAAATGCACT
CCAATGTTTGTTCCGTTTAAACTGGTTTAAATGCACCCATGAGTGTTGGA
TGAAGTTTAATCGCAGTAAAACTATCCTTTGATCCTTCAGCATTTTTAAG
AGACTGACGTCAGTATTATTGCTTTCAATCTTGGATGCATTTGCGTGGCT
ATGTTAGTATTTGACATTGGCGCAATACAAATAGTTGGATGAATTTGTGC
TGGCCTTTAGTTTTACTTGGTGTGTAAATtgtattttgtttcttttttag
tGACGTACAACATGGAGATTTAGTGACAGTCGGTCAATGCCGTCCACTCA
GCAAAACTGTTCGATTCAACGTACTAAAGGTCGCCAAAACAAACAgtgca
aaaaaatcttttgagaaattttaaataattatCAAAGATGTTAAAAACCC
TTGAATTGCTTGTCTATTCTTTTGATTCATTGGATCCTTTaatttaacct
ttgttcgtctgttaccagcttttctcaggattggctatGGCCCATTGTTC
TTTTCTGATTCAAGTGAGggagcccaattttcaaaaaaaaatatttttgg
ggaaatttcaggggggtacagaggcagggtactaatagtagaggccacta
tgtcttcccgtgtgcagcagcttgtgcaaagggattttatgattgaatat
tgttccttgaatgtagaagatcaaaatttgagaggtggggccgggtgtga
ctactcgttgccatggaaactgacgtcattggttact
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053111TCONS_00053111Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053111-proteinTCONS_00053111-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:175730..183266 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RPS1140S ribosomal protein S11 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1280.88	1263.19	1305.27	1469.13	1182.92	976.73	1330.66	1362.1	1949.8	1603.44	2013.85	2416.69	2513.22	2628.19	2471.7	2256.39	2513.3	2765.77	1357.92	1530.96	2950.97	2772.37	2016.22	1894.41	1960.23	2040.45	2788.4	2820.29	1541.4	1595.31