XLOC_033797 (gene) - C. hemisphaerica

Overview
NameXLOC_033797
Unique NameXLOC_033797
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_233:195073..201206+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033797 ID=XLOC_033797|Name=XLOC_033797|organism=Clytia hemisphaerica|type=gene|length=6134bp|location=Sequence derived from alignment at scaffold_233:195073..201206+ (Clytia hemisphaerica)
CGAAAAAAAGGCAATGATATTACCTGGCACTATCGGAGGTATGCATCAAA
AGCCGATGATACGTAGGGAACGAGGTCGCGTTCCGGATCACTCGCCTTAG
CTAgagaaagaagtttttttttgaaaaattgatccTTCGAGGCTTTTTCA
TAAAAGTGttttgattttcgattttcgaaaaatgttctcaaatgtcctag
tactttttcaaatttttaattttaccatttttgacTTTATTATATGTGAG
AAACCGCTACCGGACTGTTGAAGAGACTAAACCCTTAGTAGAGACACTAA
CTGAAGTGATAAAACCGTCAAACTATAAAAGAATTTCTTCCTTAAGATTT
AAAACTAAAATAACCAGGCGATGTTAACTGAAAACGTAAACATGTGATGG
ACNctctattgtttaagaacaataaaATGCTAATCATAATGCAAGACTGA
TATAGGGGcggacacttgcttataaaaaaaaacacgtaaTAAAAATCTGT
AACCATCCTTTATTTCTTTGTTAAGGTCTACTCGCGTTTCTTAAGACGTA
GGACATAGGCTACTAAGTACTTTGTTTGTAATTGCGTGTCAAATTCCAaa
atattgttgtttttttttgtcagtgGTATTATAATGATGTAGCAATAGCT
ACAGTAgcgattttttgtgtttttgttttgctGTGACAGTATGTTTGGTG
AGAATGTTTTAATTTCAAACATTTGAATTTCATATGATGATTTTCAGAAG
ATGCAATAAGACGAACATTGATTATATCAATGGCTATCTGGTTTAAGGCT
ACAAGATTTTTAATTTAAGTTAGTTAGGTTTAATTTTAATTGAAGTTACG
TTATCTTACGCGTTCGGAAAAAAGGCAATGATAGGGTATTACCTGGCACT
ATCAGAGGTATGCATCAAAAGTCGATGATACGTAGGGAACGAGGTCGTGT
TCCGGACCACTCGCCTTAGCTAgagaaagaagttttttttgaaaaattga
tccTTCGAGGCTTTTTCATAaaagtgttttgatttttgattttcgaaaat
gttctcaaatgtcctagtactttttcaaatttttaattttaccatttttg
acTTTATTATATGTGAGAAACCGCTACCGGACTGTTGAAGAGACTAAACC
CTTAGTAGAGACACTAACTGAAGTGATAAAACCGTCAAACTATAAAAGAA
TTTCTTCCTTAAGATTTAAAACTAAAATAACCAGGCGATGTTAACTGAAA
ACGTAAACATGTGatggacggtgaaaaagaatgcggctattatattttga
tttttccctgAAAACGTAAACATTTAAGAAATTGTTAAGAGATTGATGAA
AATTCaaatattgcaaaatcttgaaaattggaACGGAATAGCAGAAGATA
TcggaaattttcttttcacaaGTGCCCTAGAACAAAATACCGGTAGAATA
TAACAAGAATAGgtaattaagggctctgaccatagtgaattttttacatt
tgccacttacaaaatatgAAATTCTGCCTAATGTAGTAGACAAAactttg
acatgttatacattttctacTAGGCCAACTATTCgcgagtctgaaaattt
aaaaatcgcaatgaaaaaatttgatgaagaagaaaatgaagacttttgca
aagaagagtattttaactttgaatagcttagtttcggcgaagaaaaaaca
ttttgaaaagatttttgcggtagatggtgtatttTTTATCGAACTCAAAt
taattttgcggaaaatttttctgaaagcttatatgcttcaaaatcttgaa
aatagtgctttttgaccaattttccgtCCCAACTTTTCACAGAAAAACAA
CGNaaatttttctctgattttcaaaaatttcctacccttagtgagacttt
tttgtaattttttctctcaaaatctaattttttttctaaaaatcgtgatt
tttcccaaccttagagagactactttgaaattNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgcattaatttagaaaatttttccgaaaattttaaaac
agttcaattctttgcggacagtttgaaaaaacttcgaaacaaaaaggtta
attactcattaaaacttagcactttttctaaaggaaggtgatgcaacata
ttactaacgtctttttaaatgtccataacgtcatttttccaattaaattc
ttaattacacTTAAGGgattttatgttcaaatactaaaatcaattttcag
actatggtcagagcccttaaagtcTTCTTTAACTTcagatttttctttct
tttaaagatttagtttttaaataagagtgataccGTTTACTTACTCAATT
CGTTGGGCCCCTTTCAAATAAGTTTTGAAATCCTATCTACTTTCAAACCA
CTAACATACGCTTGAGTCCCACGATAGAAGCTACAGATCATAAGTGTTGG
CCCCCCTACAATTTATTacgtattttttaaatgaagatcCCCTCGCTTTA
GCCAAAACCAGGGATATCCTCTGGCGACTATTAATAACATAATAAATCCT
TGAATACACTGGGACGAATTTGTTCTACTggtaattttcttttatttgta
gATTACATCAATAGTGGAACAAATTATGAAAAACGGAACAAGTTATACTG
ATTACCCAGAATTCAAATTCGCCAGAACTGTCAATCTATATTTTCCACCT
GTCATAGTTTTGATAGGATGTGTTGGAAATTTGttgagtttttttattta
catcAAAAGGAAATACAAGGACAAGGTATGTTaaaaatactttaattagg
TACCTACAATGGTGGTCAGAATATGTTGGcattttgagtattttggcAAC
TTTTGGCGTTTTACTttatttaatcggatatttcgatttgggaggggtat
AATGGCTTCCATGCTTTTTTTTCTctggcgctatcagtaagcattaaaat
ttcaataatacGCAGGATGAAACGTCTCAtaagtctaaatagcctatatt
gGTGTAAAATACACtccgtaattcgaatctttttctaattcgaataaaat
cCTTATTCACTCGATGCTTTGAGATAAGGATAAATAAGGGACAGCCAACA
ACTATATTATAAAATTTTCGTAACGCTGTTTTTAGGTTGCACCTGTATAT
ATTCTAAGCCTGTCAATCATCGACTCGATCAATCTGGTCATCGGATTACT
ACAATATTGGCTGATGTTCAATTTTTACCCAGAAAACATTGCACCTCTTC
ATTGTCACGTGATGTTTTTCTTGGTCAATGCTATGGCTAACCATTCACAT
TGGGTTGTCATCGCATTCACTTTCGACCGGTTTTTAGGTATATGTTTTAT
TTTGTGGGTAGACTGGCACGGGACTGGTACAAATTTTTGTGTACAGGCGT
TGCGATATCTATCAAGCtgcattgaaattgaaattctgGAAAGGTCAAAA
GATTAAAAGATGAAAGATCCTTGATCGAAAAGGAGCATTATCTTGTTTCA
ATTATTCTAACccaagttttgaggattttactttatataaaagaaTTTAT
CTGCTTTTTTGGGACACATTAAGATTGTAGCTcataaaaatttacatatt
atcatataacattcatattactgtattagtactagtaatcgtatggtttg
gagtgcaattaacgattaatcacgagtaacaaaggagaaaatagtaattt
gcacgacaaaacatacgattccgaggtaggttgcgtttagaccaactggc
atttgtaatttggcatttgctcatgagggattcgattttaatagcttttc
cattgtattttctgtcatggcatttaagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaatgtcattttt
tctctttgttttggttcctttgtttgatttgaaatgccagaaaaggggat
tcctttgctcaaaatggcatttaaaatgccaacgaaatgccaacacgctg
gcatcattaggcatttgacaaaccgaacaattgcgcggaccaatagaatt
caaaagaatactgcaagcaattacaaatgccaggctggtctaaacgcagc
cgtaatcgtcagtaaataatcattttgggagagacttgggagagaaaaga
ataaggggagaAAAGTgtcccccgccgaagagtgcaaaaagtggtaatag
tgcaattaacgattaattgcactcctctaaaccaatcagattcgagtaat
tttgcacggctgacgattacacGAATTATAAATGACCCTAGTTTACCTTT
TTAACACTGTGTTCATTTTCTCTTTATAGCTGTTTGGTTTCCATTTTGGA
CTCGACAATATCAAAACCGACATCGCGCATGGATCACAGTCATCATAATT
GGTGTCATATCATATGCCAAGAACCTTCACTATATATGGACCGCAGAATT
TATCTACCagccaaaaacgaaagtggcaTCATGCGGATTTGGTATACGCA
ATAAGAATCAATGGGTACTCGATTATCAATTATTTGAAATCGCTGTTTCC
TCATTGATTCCTTTTATAATTATTGTCGTTTTGAATAGTTCGATTGTTTA
CCGAATGCATCGAGATGGTAATTTCAGTAAAGCTCAAAGACGACATCGGG
GCCATAAACTCAAATCTCAGTTTGTAAACACTGGGAATTGTAAGTTGAAA
ACAAGCCAACGAcaacaagaaaacaacaaaTCTAACAATCACTCGATACC
TACTTATGATACAAAGCCTAAAACGGATTGTGCAACTGCTAATTCTTATA
ATCCACTCAACGAAACACATCCAACGTTACCAAAGCTAGCAAATCAGGCG
CCAGATTACAATCCACACAAAGACAAAGACCAGAACTCAATAAAACCTAA
ACCGCATCTCACAATCCCAACGTCCTCAAAGCGACGTCAAACAATTGTAC
CGTCAGATTCCATACAACAAATCACGTCAGAATCACCAGAAAACATTAAA
CCTAAAAGACTTTTCCATTACGGTCTAACAATCTCTTTGCTTCTCGTTTC
CAGCGCCTTTGTGGTTCTAGTATCACCTTTACTAGTGCTCAGGTTCTATT
ACATGAACCAAGAACATATAACTCCACATCATAAAGCTGTTTACGCCATG
AAATACCAGATCTGTCAGAAATTATGGTATTCAAATAATGCAGTAAACTT
TTTCTTATATTCATTGTCAGGACGCTCTTTTAGATCAGATCTTAAAGCAA
CAATTCTTGGATTATATACTAGAATGTTTCCAAAAGGTAAAACTGACAGA
CGCTCTAACAGTAGGACGACTTTGGACAGCGTGTTACGTTTTTCAGATAG
TAGCACGACTATTGATACAGCGAATTCGGTCAAAGAAAATAACTCCTGAC
CTATGGATTTCAAGCGTAGTACGGAGAAAAGTACAGCCcggactctcgct
aattcgaattcAGATGGGGAATCTtttttattcg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053539TCONS_00053539Clytia hemisphaericatranscript
TCONS_00053540TCONS_00053540Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053540-proteinTCONS_00053540-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:195073..201206 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13	0.05	0.06	0.03	0.07	0.14	0.74	0.95	0.53	0.6	0.45	0.91	2.13	2.3	1.47	2.36	1.1	0.99	1.73	0.85	0.68	0.67	0.45	0.36	0.7	0.68	0	0.04	0.23	0.15