XLOC_034221 (gene) - C. hemisphaerica

Overview
NameXLOC_034221
Unique NameXLOC_034221
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_242:1103436..1108996+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034221 ID=XLOC_034221|Name=XLOC_034221|organism=Clytia hemisphaerica|type=gene|length=5561bp|location=Sequence derived from alignment at scaffold_242:1103436..1108996+ (Clytia hemisphaerica)
tcagtaTGCATCGACTCGTATACCGACTGTTCTTGGGTGAAATCAAATGG
TTATTGTAATCCTTCAAGTCAGTTTTACTCATGGGCTAAACAGAATTGTA
TAAAAACCTGTGGAATTCAATGTACCCCGCCTGGTAAGAAAACAGACGTT
TTATTTGAAAcattcaacaaaaaaatttgaaaatcttgcaAAACTCAAGT
AACCTGCTAACTTATCTATCAAAGATTTCAGAATATACTTCACCAACGAT
AAGaagggaaatttttttcaaacaaatccttataattaccttatcggccc
tttttacgccgccCTAATTTAACGTCGGCCCCTTTTACCATGATTTTAGA
ATTTATAGTGGCCACAGACTTTAACTATCGGCctaaaaagttctaaaaaa
ttAGTAGAACACGTTCATTAGATGATCATTAAATTGAAGTACTTTTCCAT
GGGAATATAACGGTGTGTTTAtcctctttttccaaaaaagcaagTCTCAA
AATCGCAAAGTTTCCCAGGTCTTGGGCCGGTAATTCAGGTCTTTGGCCGC
ttttacggaaaaaaaatttgctacgCTGGCCCTTATcacgccacagccta
attttgggcttacgccaataagggccgttaataacgccaaaatttgtaaa
aatggctacttatgcTTGAAATTAGTAcataatgactaaaatttacatta
aaatgtcattttcagtattaaactgttgaaaattccatcgaaaatcactg
atttccaaatatattaaatatttcactgaagttttaaatatggcgtaaaa
caatggataattttcgtcttcgaatcacacctaaaatcctttaaattgag
aaataatgataacAAATTAACGTCACTTTTAggccaaaattgcaaaatct
tggccctttttacgccggcccttattacgccacgagcccaaaaataacgc
caataagggccggtgtaaaaagggccgataaggtaatcaGAGAAGAGTAG
TATAGTACAGAGCATTATAAATACGCAGCCTGTCTATTAAAATTGAAAcc
aaattttctatgtttactTTATCTTTTCACCCTCATAGCATGTGTAGATA
GAGATGCAACATATTGTGCGTCAAAAGCTACGAATTGTAATGCTGGCCGA
GGGTGGAACTATTACTTGAGATATTATTGCCCAAAAACATGCAAAACTTG
CAACGGTGGCGGAAATGGTGGAAGTGGTGGCGGTTCAGGCGGTAAGTTAG
TTAAAATATCTAAACTTGATGTACTTAGCCGATACACCTTTTTTATAGGA
ATGTACTCCATAAGAATATTCATTGAATTGAATAAAACATTAACATGCTA
AGAATATACTCGTGGAATTCGGCAACTGAACCTAAAAGCTATTTTGAGag
catttttaactgtaaattgcgTAAAAGAGCAGTGTAGAAATTTACAGAAT
TGTAAGAGCTGCAAGTCTTTGCTTTGCCTAAAAATTAGATTCTAAGTAGT
TCTTGATTTTATTACCcttacagtagcgtagacagaaCAGGAACATTTGC
ACAGGAGAGCAGATTGAAACGACCCTTAATTATGTTTTTATACTACGAAT
AGTTAAGTGTTTTGTCGTAAAAATATGCTCTCTTAAACGCAGATCTTTCT
TCACCCCTGTCTTCGCTACTGCACCTTTTACTCAACTATTCAGACATTGT
TTTCTTTACACTTTCCATAGGTCAAACCTTGTAAGCTTTATAGGACACTT
AAACATTTTATAAATTAAAGTAAtctgggagtttctaaacatcgaccaga
aatggcgacccggggggggggggggggtggaaaaaaaggggggggggggg
ggggggggggggggggggggataggacaaaatgggttacggggatgctcc
gctggtcagggtacctttttcaacctccaagagtcccaggtagggtcgca
aaaaacaccaaaatagaaaaatcagtccctcatagggtgcctatttttgg
aaaattcggggaaaaagtagaaaattttggaatttcagtccttTTCAgcg
tcacttttttcgcaaatttcgagtcccacgtagggtccatttttcgaacc
tcagcggagcacccccgtccgtcgacaagggtagtgcccccccccccggg
gggcgCCAAGGggtgtcccccccccccccccgggtggcGACCACAACCAG
CGttcacgaccggcgaccagataaatttggattatcgagtttatctgctc
tccccaccgtagagaatgtttaaatcaagttctcagaatactaaaaagtg
acctttgaagtaaccagtcattttcttgacaaagtgacactatttgGCAA
AATTATTGACAGGGTCGTTAAGTATATGATGTTTGTAAGCTttgttacac
caaatattttaattatgctgaatgagatgcagtatgaatagatagaactt
aTCAGTAGGAAAAAAATGGGagggccagttttagagatacgaaTTTAATC
AATTATTCCattgtctttatgctgacaaatTGACTCatctcgataaccca
aatttatctggtcgctggtcgtggtcgccggtcgtggtaggcttctgctc
atcctctagcgaaaaaagtttcttatagaaataggaagtataggtctgcg
aatcagactacggtcgtggtcgtcatttccggtcgatgtttagaaactcc
caagTAATCTACAATCTTATTTCACAGGCGGCGCCACAAAATGTGGAATC
AAAGGATCAGGTCACACAAGAATTGTTGGTGGAACCAATGCTCGACCCGG
TGATTGGCCATGGCAGGTGAAAAAGCCCTTTGAGCACCTAGTTTTCAAAG
AAGGCCTTAAGAAATCGAAACAAAACATTTCTTAATTTCTGACCCTAATC
GTTACCAGATCCCAAGTTTAATTTATTTAAAGGAGAAAACGAAGAATAAG
AAATTGATTctcatagcttcagccaggtttctagctccccccaacaaatt
AAGGTCCCCCaaacaatttagctccccccaaaaaattgtgctaggtcccc
taatACTTAGTCAGCAAGATAagctaaaacaaaaacattgttctcccaCC
CCCGTAGAgagaaatcaataaaaaatatatgcagGTActgtactgataaa
tgaaaacttgtattattattttacttgtattaatatttatgtttacaaat
cttttgctttttatatttgatttaatagtaagataagagatcttttgaaa
ttagctaAACAGCCCCCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccc
ccccccccaaaaaaaaaaaaaagggggggggggctgaagctaTGGCTCTC
CTCGAAGACATTCTTCTAAAAGCTTGGTCAAAGATTACTAGAGATTTTAG
CAGTAGTGCAGATTGACTGAAGCTTCTACACTTACCTACAAGGCACTTTT
GTTTCTCAGGTTCAAATTGACAGGACTACAGATCATATGAGAGTCTGGTG
TGGAGGAACGGTCATCAATGATGAATGGATCGTCAGTGCTGCTCATTGCT
TCGAAAGAGATACCAGGGCATCAAGTTACGCAATCTATTTAGGTGAGAAA
CTAATGCAGCTGTTAAAATATCTTGTATTAGTATAATTCAACGAGACTTG
AATCAAAGCAAAGCAAATTGATAATTTGAACAGTTGAACATTATTGGAGA
AAAAGTTTACATCTGTGGCGCCAACGctttaattcaaaaaagtttttccg
taaTTTCTGTTTTCAAAACATCAGATCGTCACTTTCAAAATATCACCCCT
ATAAGGAAAATTTGTGCCTCTGAAATCTAAAACCTTTAAACCCGATCAAA
ACCCTCAGATGTGCCTCAGCACAGAAAGGTTAAAAACtatattttcatta
atttttatagGTGAGCATGATCTTCAAAGTGGTAGCCAACATGAACAAAA
ACTTGAGATTGCAGAGATTATTATGCATCCAAAATATCAATCACGCACAT
ACGAAAAAGACATTGCACTTATCCGATTGAAAAAGAAGGCCTTATTCAAC
ACACACGTTCGCCCAGCATGTTTCCCCGATTCGTCCGTTAAATTCTATGA
TGGGGAGGCGTGTTACGTGACTGGATGGGGATATCTTCGAGAAGGTGGAA
GCTCTCCAAGGGTAAATTCTTCAATtagaaaaatcttcagaaaacatcaa
aatcttgTTTGGTCTAAGAAATAATTTTAACTAATCGTACTAGGGGAGGG
GCTATTTCTGTGACGGGGGCGGAAACTAatgttaatagctcctgaaataa
tagagcttttagCATAAaactttctgtaaattcctTACTTTTATTTAACT
CAAAAAAGTGAGTGAATGATAATCTTAGAAAATTATGGCCACAGATCAGG
AAAACTTTGGAAAATTAATAACCAATAGAAAGCAAGGATAATATTCATAG
GAAATTAGgagttcatttttcttttaaatccaCGAAATTTAAGAGATAAC
CAGGCACCTCCCTCAAAAATACCTCACATAGTCCTTACTAAAACCTCCCA
ATTTTACTGGCTACTTCAAAATTAAggtaattgaaaaattaaagttcttt
caaaattagatcTTATTAAAATTACAATTTAAGAAAATCCCAAGCTGAAG
CACAAATTTTCTTATATGACccagaattttgaaactttatcATACTTTTG
ACTGTTATAGATCTTACAGCAAGTGAAAGTACCACTTGTACCCAGAAGCA
CGTGCAGACAGTCATACGGACAAAATAGCATCACGGGTAACATGATTTGC
GCCGGGTACCCGCAAGGAGGAAAAGACGCCTGTCAAGGAGATTCCGGTGG
TCCGTTGGTCTGTAAAAAGCGAAACTCATCCGGTCAAGATGTTTGGTATT
TGTGGGGAGTCGTTTCATGGGGTCGAGGTTGTGCTTCTCCAAGATTATAT
GGTGTATATTCCAATATGGAAACCCTAGGATCATGGGCCACCCAAACAAT
GCGAAGCagatcttaaaatgtttttagttAACTTTAGAGTCATTTGTCAT
AACGTTGCAAGTATTCTTTCTTGGAATAATTATACGAATGtaccaaaaat
ttaaaagtgta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054248TCONS_00054248Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054248-proteinTCONS_00054248-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1103436..1108996 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.04	0.05	0	0	0.09	0	0.04	0	0	111.1	92.35	0.02	0.09	15.01	23.19	613.89	575.45	59.19	66.4	40.34	48.03	53.59	54.76	4.4	10.59	0	0.04