XLOC_034226 (gene) - C. hemisphaerica

Overview
NameXLOC_034226
Unique NameXLOC_034226
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_242:1295432..1304261+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034226 ID=XLOC_034226|Name=XLOC_034226|organism=Clytia hemisphaerica|type=gene|length=8830bp|location=Sequence derived from alignment at scaffold_242:1295432..1304261+ (Clytia hemisphaerica)
CCATCACCATCGAGATGAggttataagaaattttatatttatcgaatgaa
aatttattttgttgaaataCTTCAGCTTTGCCGTTTGTTTTTTAGGTAGG
AGAGAGAGCGCGGAGCTGTAGACAAAAGCCATTTATAGTAAGTAAGTgaa
ataacaatctgatgaaAGCTGTTTTTTCTTAGAGTTTTAAAGACTATGAA
CTCGCTATCACAGTTAAAGGTTTAATCCAGCTTCAGATTCATTTTCAGCG
CAACTTGGgctgggaaaatgtttttgaataatGGATCAAAATAGAGTTAC
AAATACTTTAGTTAGTTCTTCTTTGCAAAGAGGAGTAGAAAAAATCTTCT
TAGCCTCTATCTGAATTTACTTCACAAATTGTAGTTCATTCTCAAAAGCA
AATACtggtttaaccctattcaacctaggcttttaggggcggttcagaac
taggggtggggcttttcctgtaccagcCCTTAACtgttgatctagtgggt
cttttttgatgaaatttggcacacaagatccttgtcacataaggtaactt
ttgacaaatttttttttgatgacgtcacttatcatgcccaaagtgagcaa
aaaccgaaaatttcctttgttcttataaatagctattgtattctaacaaa
ggctatAGAGAAAAGTttcctgagtttaaaatgcttattttatcctaaat
attcaataaattacggtttaaacaacatatttgacattaaaaataaattt
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaaggttccttataata
aaaaaaacgtgtaggattTTAATAGCAGAAATGGGtacagttgagttaga
atcatGAAGAAGTCATGAGGAGGAAACTAATACAGGAAGGCATTAAAATT
cgaatttaaagtttttaaatgaTGATACTTCCAATGTCAAATCAACTTCA
AAATATACTTAATATTGCCTTTTGAGTAAGAAAATCAATGTCGTAGGCTT
GTTTTTTCaaatggattaattttcgcgtagACTTTTTTTCACGAATCGAG
AATCGAAAATTTTcgtgtggacaaaatttcgtgAATAGGgctctttttca
tcaaatttctttcaatttcctcGGTGTTTTGATCGATTTTAAATATGTAT
TGGTGAGGGCTAGTATTCGCGAAAACGGCCAAAATTCgtgaaatcaagaa
aattgatccacgcgaaattaagtccacTTGAGTTGGTGAAATCCGAAGAA
GCTGCTCTGTCATCAACAACTTGGCAAAAAATGGCGGTCGCCAGCCTTTC
GCATTTTGAAAGAAGTATTCTAAATTCAGTTatcaataaaattgaaaaag
tagCAGTTCGCTTTTCGGTAACTTTTTGAAGCTTGTTCGCTTTTGAATTT
ATCTTGTCATTTGAAAGAATTCCGAAACCGTTTCCTAAACATTAAAGATG
TCATGACACAGTTGTTTGTAGATATGCTTTCTCGAGGTTGAAGTCTCTTA
TTTCACTGAAAGGTATTATTAAATAGTTTGTGTCAGCCAAAGATTGACCC
ATACAAGGTTCaacaatttgaataaatttagtGTCGAGCTTGTCTCGTAA
ACTTGCAGACAGATGTAGGACCAAAGTGGAAGTACCTCTCCGGTTTTAAG
ATTATTCGTTTATCAAACTCCTTCAGTCATCACCTTAAAATTAGATATCT
CGGAGATTAGGAAGAATTTTGGAGCTCCCAGCTCTATGTAAATTCAGACC
CCGTTTATGACGACTGGGCATTATAACGAAAGCAGTGGGCCCTCACATCG
CCACTAcctacagtagagtctcttctAACTCGAAacttccttaactcgaa
caatctTTCtcccccttcagttaacaataccttataaaaGTCAATACTCC
CTAACTCGAAacttccttaactcgaacaaatttgctttCCCCGTGCGAGT
ATAATCTTCACCAGGCTAAGCGATACATAGTTGTTTGAAGTGACCAATTT
GTTCATATGAGTCACTAAGAAATATTGATTCTATACTATcgtgatgttct
tataaaaaccaaATGAATTGTCACACATTTATCGGGTTGTCATGTTGtat
aaaaattcttataattctttgtttatcttttcgTGGTTGTACTCTCTCTA
TCATTTTCAACTGATTTTTATCTTAGGTAATGTGACCATGACATTGATTT
CCGGCGACAAGTATGAATAGAGATGTCTGTAAGCTTTGTTTTTGTTAAAG
GACATTAACTGACTGAGAAGCTTTAAGTGTCAAACCTCtagatttttttt
acaattttaggagaggattttttttctcttgtcACTGTATGTTAACCAAA
CATTTTGAAAGTTATATGTTTGACGTGGCTAAGAGTAATTTGTTACGAGT
TATTATGTTTCAAATGTAAAGTATATTGTAGCGTGATAAATTTGACAATT
TGAGTTAGATAGTAGTATCAAAACTATCTGAGATTTGTATGAGAGGATAT
TGGAAATCGTCAAGTTTAACTGACTTGGTTTAAAACCAACTGATAAGAAA
CCTAAGCGATATAACCATTTGTTTTCACCGGCCAGTCTTAATAATATTTT
ATCGCTGAACCGTAGCCGCTAAAATCTGTTCCAAATATTTGGTATACAGT
GGAAACTCCATACTTCGGatacgcacggggaacacaaattggTTCGagat
tgtttttttataaggcattgttaactgacggaacgagaaaacttgttcaa
tTTAAGGggatattcgagttatagaggttcgagttaaagtgaCTCTACTG
TAGCAGTGTAAGTCAAATGTTTGAAGGTTTacgttcaaatatttttattg
ttcaaatTGTTTTCTTATGATTTCAGAAATTTAGTGTAGCAACAAGGATT
GACAATGAAGTTTGCTGTCGTGGTATCATTACTAACAGTTTTGGCTTGCG
TTTGTAATGGTAAGTCATATACGTCTCTATAGACGAtattatcgtccgtt
acagtgatataAATGCGGGAAAATATTATACGCGCGGAGATTTACAGCTG
TCATGGCGGTAAACGGAAAGAAAAATCGGCTGTAGGGTTTCGAAGAAGAC
GGCAAATTATACCGACTGTAAAttgttttcagcaaaaatctcATTGGCTA
ATTTTCATaggctttgggcttatttcttagatagtgatttgtcttaaaCT
ACAGCATAGTTTAGTCTCTTTACAATACATAGTGCGAGAATTGTAATACT
AAAAAACGATATTTGATTATAATCAAAACTGCAAGCATTCTTGCGAATAA
TATGAAATTGTTGACCGCAAAATTCGTTCGCTAAAATAAGTAAATCTTGC
ACTATTTTGCCTTTTACTTCACAAAAtttcgtttgtttgtttttctgaCG
TAATGACACATCATCATTATTATTTTgtcaacaaacaaacaaagcaAAGT
GAAATGTTTTGATAGTGATATTTGAACAGGAAGTGCGCCTACAAGAGCTC
CTCTGAATCATTTAACTTCAGTCATTACATACTGTGAATCTAGGTGGATC
ACTCTTTTGCCCATTGTGTGTATAATTGAGTCAAAACTAAATATGAAAAt
agtgcgagccataagggtcccttttcacACCCTCCAAAGTCTctcaaaat
ggtaaaaaaaccattaacaaagaaaattgagtccaaaaatcacgaaattc
aaaatttcctccctcaaagggtcgtgattttccaaaatttgtatTAAAAT
CAAGTGCAAATcgacaaaaattttgagaaatacaATATGAAAGTCCTATC
GAAACAAACATCGTAACATGATTTCTGCCCGGAGAATATTTGCCtaaagg
gtcactttttcatcaaaaatcagtctctATAAGGGATAGGGTTCAGTAGT
CTGATTCGCATGTACTCACTTACTTGTCTCCAAGCCTAGGACTCCCTCCA
TCCGGATCCCTGCCTTTTTTATACGACAACAGAGTAGTTTGGTATTCTAT
GTTGATAGATCGTCCTACGAATTGGCTAAGATGTCTCAAAGCTAAGCCAT
AGAGGGGTCCCATGTTCTTATCTCCATACATCAACTCTTTTTTCGACATT
TTCCACATACATTGGCAAAGAAAAGTAGTTTGACatatttttccttttcc
tcATTTGTAGCTCGTAAGCTGAAGATCGTGACGGTGGCAACCGACGAAAC
AGATGGATATTTACGTTTCCAAAGATCAGCCAAATTGTATGGTCTAGATG
TGGAAGTTTTTGGTATGCATGAGGAATGGTTGGGTGGTGATATGGCTAAT
GGTCCTGGTGGTGGCCATAAAATTAACTTGTTGAGGAGACATTTGAGGaa
atatgaaaatgaagaagatctCATAATGATGTTCACTGATAGGTTTGTGA
TTGACTTTGatgaaaattgtgtttttgatGCATATTATGATCTTGACGAT
ATTAAATCGAATGTATAAATCAAACTCCCAGACCGCATAAAATCGGaatt
tttcagattatttttaaCCCAccatttaaaatgtttttgcgGGTCGTTGA
AACAGGGGTTGAAATAGCAGTTGAGAAGCTGTTAAATGAAATTCTTTCTT
GAAGTTCGAcaaaatgaaatgattttgCGGAAGGCTTTTTACCGTTTTAG
CTTAAATTATGTAGAGCCTCACAAGAAAGGTTATCAAGGTTTGGTTTGTT
TAAATTATGTCTCTCAACTTAAAGTTGATGAATTGAAATAGCCGAGCTAT
ACAATAATTATTTAACCCTCCCCCTACTTCCATAGTTATGATGTCGTCTT
TACAGAAGGACCAGAAGAAATTCTAAAGAAATACGATTCTTTCAACGCTA
CAATTTTGTTTTCATCGGAAGATTTCTGTTGGCCTGATAAATCATTAGCT
GTAAGtccgaaaaattgttttcacttgcaatgtaaatattttttgcagat
tttaaCGTTTATTCTGACCTTATTTGCAAGCTTATGCAcctgcacttttg
aggacggctgAGTNTTTTTAACGTTTATGCTGACCTTAGCAAGTTTATGC
AcctgcacttttgaggacggtggaGTGACTGAATCGAGCTGGAATAATCC
GCAGTTTTGGCTGAATTACCGTCGTCTTCAATTGATCATGATCTAGCCGA
ATCATATCCTGACGCTCCTGTCGTAGAAGgaaaaaatacataaactcgct
aaaagGCTTGATAAACGGTAGCtctccaattttttttatggaGAGCGATT
CCTTCCTTATAAGGGATAATAAGAATAGAAACCAGCCTCCGTCATTGATT
TTGAGAATCTTCTGTAACTGCCGTTGATTGATAAACAAGCAAGAACAATG
TAAAAAGATCATCCATGATGATgcgagaagaatctctcgaaacgtagcca
aacgtaaatctcgtgatccaagccacgatgaACTTCCAATATAACAAAAT
ATGCTTTATAACTTTTctccttctttttctttcattgcagAAAGATTATC
CGGCACCAGACGTTGAGAATGGATACAGATTTCTCTGCTCTGGAGGTTcg
taattttctttctttctttcttcatGACCTTCTTTTCTTTATTTACCTTA
TCGGGAACAAAAAAGACACAGTGTCACAGTATCTCCCAAACTGCGCACCC
TATTATGTTTCAGTACTGTGCCAACTGCCACAAATTTCGGTGATATCGTA
aactattttcattttcactattACCTTTAGGGATAATCGGACCAGCAAAT
AAATTGTTCGAAGTGATTTCAATGGAAGTGATCGAAAATACCAGTGATGA
CCAATTGTATTACACAAAAATCTTCCTCGAGAAAAGGGTATGCTTCTTGC
TcaattatattttcaaacaccCAAAAAGCCTTTGGATTatcttgttctta
atatgttggtcatcgaagcctaatgttcttatagaatttgttcttatata
aaagcgTGTAGCCTGAGGTGACTGTAATAGTCCAGTGGCATTCGGTACAA
ACCCTGATCAAAATGATTAGTGAATGAGGTTGAAGAGGAAATCCCTCATG
ATCCCTTTGTGTTAAACAGTTATCTAAAAGGAATCTCTGAGATCACCCTC
GACTGCGATCGCATAACATATTATGTATATTAAGACTTGGTTTATCAATC
GTCACGGCCGGTTTGTGAATATTAACTTTCTCTGCTCTGATTCTTTTAGG
ATAAGTACAACATGAAATTGGATAGCTCAAGTGTATTGTTTCAAAATCTA
AATGGAAACAAAGGTGCGTATATACACATTGGCACACAAGCTAACTTCAT
CAAACTCCAACTCAGTCCTTGCTTTAGTTTGCTTTTTTGTGCCTCTGATA
atatcacgtccatcagtaaaatttAAAGAGTGATGGAATAGGCTCTGGAT
ACGAAATAGTATCTTCATTCCAAACCTGAGTAAATTTCAGTTAAAACTTT
CATCGGCGAAGATTTATTCCCACAATACCCATACCCCTTCTctaatttgt
ttttttgtgaCTCTCATAATATCACGTCCATCATAGTAACATTAAAAAAG
TGATGGAAGTGGGTACGAGATTTTATCTTCATTGTGTCAACCTGATAGAT
TcatatttttaaactttcatcAACGCATATCTATTCCCACCTTTTATCCC
TTCTAATGGACGATAACATCGTTTAATAGATAGAGATCTCGGCCACTTAC
CTGGTGCACAAGGTTTTTTCAACGTATTCATTAAAAATCATAATAAACGT
TGCGGACATTATAATATAGATGTTATAAAAACATTGTATGTCCGCAGACC
TTAAAAGAGAATCATTAGAATCCAAACTTCAACCAATGTCATTTCCCGTT
CTAGATCACGTTGAGCTTAACTTCGACCTAAAAAACGCACGTGTGACAAA
TTCACGTTATAACACATTCCCATCTGTCATTCATGGTAATGGACCCAGCA
AGTTATATTTGGATCACCTTGGCAACTACATCGCAAACAGTTGGAGTTTT
TCTGAGTCTTGCATCAGCTGTAAAGAAGATACTTTTCTATTAAGTGATAT
TAAGgtaattttttgtcatttttcaagctCAAGTTTTTATACGATTGCGG
GTATCTTATTATTTAATCTTCACGGTTGATTTAGAGTTGAGCTAGAAAAG
TGGAAGTTTATAAAAACTTAAGTTGCAAAGGCCTCGGAGGCGCTCAGTGT
AAGGGTGCTTTTTGTATGTTAAGGCTACTACCATTTAggaaaatacgaaa
atttgGAATGAAATAGGTTTGtttcaagaatttattttaCTCTGCACATA
TGTTTGTTCTCGCATCGGGTTCACTTTTCTCAGGAATAGGGAAAGATTTA
CTAGAGAGATATACATTCGCTTAAATCCCAACTAGCAAGACAGCAACAAA
AGTGACAGTACCTTTTGTCTTTCCCATGACCAAACGACTTGTCAACAATA
AACATTTGTGTATTTATAGTTataaatatttgtattttttaacaGGAAGA
AGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAGAACCTACACCTT
TCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGATATCCCAAATCT
AAAATCGATATCTTTCTACATAGTGTGGTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054259TCONS_00054259Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054259-proteinTCONS_00054259-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1295432..1304261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18	0.18	0.08	0.16	48.04	43.65	19.45	20.85	10.13	17.92	17.81	5.16	34.21	33.69	18.28	21.13	60.97	95.73	36.39	47.63	36.21	34.63	14.16	24.19	35.11	36.76	3.46	4.12	79.36	96.02