XLOC_038845 (gene) - C. hemisphaerica

Overview
NameXLOC_038845
Unique NameXLOC_038845
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_361:1781567..1788076+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038845 ID=XLOC_038845|Name=XLOC_038845|organism=Clytia hemisphaerica|type=gene|length=6510bp|location=Sequence derived from alignment at scaffold_361:1781567..1788076+ (Clytia hemisphaerica)
GGAATAAATAATTGATATCCAATATCAATCAATAGCAGGTTATTGATTAG
TAATTGATTGGAAAaagctaccgtcaactgctctaacttgagacgattgg
tcgaaacatacTTCAGTATACTTCATTCAGTATACTTCAGTGCagttact
ttaatcgtagaaattttagcgagactaattttagcgttttagcgagtttt
ccctattttcgctaaaataaatctcgctaaaacatgCCGAATCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaatt
tatccgcgcgaaatttctggttatattgccttgatatatttttatcaata
ggaagggtttcagtgcaaagaaatgctagaaaacgaactaattcaataat
gtaatacgagtattcgctaaaatttatccacgcgaaatcttttgaaatcg
tgattcgctaaaataaatccaaaataaatcaagattttgacgactcgcta
atatacgctaaaattagtctcgctaaaatttctacgattaaagtagtttg
atttgatgatattcATCTGTCCAGCTCGTTGGGCCCAACAGGtataattt
gatcgaaaagaGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTG
TGAGGTTCGTCGGGTATAGAGCACAGATATTTATCgagaaacatgggact
ggtggttgatatctggtctgtcagttacatcaatatgccttcttacctgt
ctttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaaaa
gacataagtgtgagaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagt
ttgtctcggcctttttataatgagcaagacatacgttctctgattacgca
attttcatattgacattttcgaggcattttgatgtaactgtctgtatttt
cactttactgttaaatctctttgaacAACATTTGTCAAATCAGACTTTGG
AGGTTTgatgaaatggtggccgaattgcaggcccatgttttgtcagatag
tcccaagttagagcagttgacggcaTCAATTGTATCGAGTGGGAGAGTCT
GGATTGGTCTTTTTTTTCGTGACATTTATGaagattatttttctcttttt
attctaaAGACAAATTAACATTTTTCATGCAAGACATCCTACCTCTAAAG
CTGTTAGACTATATCCCATTTTTACACAGCAAGGTACCATAAGCTGGTCT
aataatgttgacatccctggGACCTGAAATTTCCCTActtattttttccc
tacttAATTTTTCcctgagttttttttttttattttttttattttattta
tttgataaagCAGGTTTAAAAAAAACGCAGACTAAGTTGATGTGGACCTG
CAACtttttcccgagttatttttctgaGCTCATTTGCTTGTGATTTCATA
TTCAGTTTTGGGAGTGATTTAGTTTATATGGGGATGTTGGACATGAGACT
AACTTAAACAGTATGGCTGCCATTAAAAATTATTCTTGTTTGCGTCACCC
ACCTGCATCATATTTTAcgctgatttttttttggtgtcaagaaccttgta
aacattccaaacACCTCCATCATAGGATTTGTCGTAGCTAAGTTCTTCCA
TTTTGCGCAGTTTGAAGATTGAGCCGAGAATGCTCGTAGAACGTCTCCCA
CACggatgaaaaactttaatctgtcaatcactTTCTCAACTGAAGAGTAT
GCAATAGTGCTGCACGCAGATCATCAGTATATAtaccgggtgtctctgaa
aaaacttccccctgtttgattcaaaattgagaaaaagtgaaaaaatatat
tagcttgattttttcgaaatcgtttagaagagggtttaacttaaattttg
gtatatcaaactttaaaattgcttcattagaccaaaagttatgacaaaaa
gagtaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatt
gttttcaaaaagagcgaaaaaagacgaaaaaacagggtatcaaatTAGAC
AAGAAAACACTGTACTTTATTGACAgtaaagttttacttttgaacTTCTG
TacatcttttttgttttattattcgtttttaatgatttttattgccAATT
TAGAGCTCCTTTTGGATTCATTAATGAGCATGAAGTTTAAACAAGCAACA
AACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtctaatgaagcaattttaaagtttgatataccaaaacttaag
ttaaaccctcctctaaacgatttcgaaaaaatcaagctaatatatttttt
cactttttcgcaactttgaatcaaacagggggaagttttttcagagacac
ccggtagatagtatttaattatcattatccctttcagtctagacttaaac
tcctatatcaggattagaaactaggctagtcttacctctatTATCTTTGC
CTTTGTATCAATACAATTCTGACACAAGTTGGCACAACACATTAACAAAT
AATCCTGCgagaagtttatatcaaaatctgcaacaaaaatgaaagtgatc
tcttctactgattgctttgtGGTGCTCATTTGCGGACTATTTATTTAATT
TCCACCAATAAGATGGTCGTATTTTACAAGGTCTTTCTTTTTGGTACCCG
TGGTCTTTCAGTGCCTTGTCCGACAATTGGCTGTAAAATCTCACCCTCCA
AAACACCtcttttaattttatttgtttcaatcagaAAAGGAGTAGGCTGT
TTCTCATCTTCAGTTCTCCAAAGAAAGCAGACATTTGATGTGAGGGTTAG
ATTGTcaggtgcatgtcactagtccgacactttctagtccgaaaGTAAAG
TAGTCTgaatcaataaaataaattcacaatttagaagtcttttttttcCA
CCGTCACTTTTGTctgaaaacgaaagatttttcaCTGAGTTAATATTAAT
TAAAGTTCAATTTGGCAGCATTTTGatataattagaaataaaggaccaca
aactttaattccagccccccctcccccccaaaaaaagaagggtcgtaaaa
acagctaaatccaatttcttgactcttgccTAATCCTAATAAGcatccca
aaatttaagaaaagtcgggtttatgggcccaacctcaaagtcgccacttt
ggatttttataagcacgtggttgcttataaaagatgtgcctcctctttgg
cgattcatatttcgtttcatatgtttttttttgattcGTTGTCGGACAAC
ggattgttgtcggaatactgacgcattcgtcaaatccaacgtcaggcatt
tttactgtcagactagaaagtgtcggactacagACGACCTCccagattgt
caacaaagtgccttaaaaaatcattgaattaaaagaagaactttaaatct
taaatattttcattttgaagaagtgGTGCAAAagagtgaaacatggaaaa
gttttattttctattGCTTTAATTGAAATGGGagatttgagaaattttct
gtgtttagttttttgcacaaacatTTGTAACTATGTACAAGAACACGTCT
CTATCAAGATGTTGGctggaaatcgaaaatgaaagtaaaatcggcctgCA
CTCATAATCCCACAATCTTGATATtagagtttaagtctatactgccttta
ttttcatttctggaacTTTTTCAAAGAAGGAAAGAtagaaaagttatatt
ttttttactgctctattcacatactgaatttgaaagatcttctatgtggc
gttttttttttttgcaaacttcaaacatttttttgtccTGTTTTAGCGAG
ACTTTAGCTTTAAGAGCTTGCATACATTgcaattgttcttatcctgttct
tatttatagttAGAGTGTAATAATTGAGGTATTTAAAGTGTTATATCCAA
CTTTTACTACtatgacccctaaattgcttttatataaaattgagtaattt
caggctcagcattgttcttattttttggcgattttgagcctcattgttct
tattaaaaaataagtGTACAACATATAAAAAATAGCGAATAACAATAAAA
CCTTTCTGATGGGACTGATTTATACAATTAATCCAGAATCAAATGACTTT
TTCTGGCAATTTCAGAAAATAGACCGATGTTTATTTTGACTACAAACACA
AATCAGATTGTATTTCATTGTTTACACACTGTATATTTTATTGATCGCTT
TTTAGTAAATAAGAAAATGTCATTGTTAGCAACTTCCTATCGTTATGAAA
TCGACGGAAGTAAACGAAAATCTTTACAAAAGGCTCTGGCACGAGAAGAG
TCAAGAATCAAGGTTAGTGAAAATAAAGTGAATGAAGTTCTTTCAAATTG
ATATCCATGTTCCCTTTCAACCCTTAAAAATAATAAGACTTTTCGTAACG
TTCCTAgctttgcaaaattttaaaccaatagcatataaaaatcttttttt
agaaaaatgaattGTGTTAAAAAGTTGACAGATTTGGATGAAAAGGTTTG
ATTTTTCACTTATGAAAAGTTTGACATGATTTCTCTCGTTCTTTGTAAAG
GAAGATGAAATGTATGCAGAGCAAACACGAAGACTTGAATCGTAAGTCTT
ATAAATTCTTAATGCATTGAAATATCATATCTTCCCAAACAGTGGTCTAC
CCAGTTTCTACTCAGTTTATCCATTATTTTCTGTATACCTCAAATTCTTT
ACTGATGAAAATGATTATTCCCAATCTTATATATATAATCtaagaatttg
tttttttaggaATCAAATGGTAAATGAAGTCAGCAAATGGACTGAAAATT
TGGAGGAggt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061963TCONS_00061963Clytia hemisphaericatranscript
TCONS_00061964TCONS_00061964Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1781567..1788076 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.43	17.89	23.03	39.29	99.33	92.44	66.92	94.64	21.51	39.82	20.48	33.65	2.88	1.78	2.92	2.44	10.83	9.02	6.43	4.49	5.54	3.57	9.51	6.7	94.66	51.03	11.54	4.95	2.52	8.29