XLOC_039414 (gene) - C. hemisphaerica

Overview
NameXLOC_039414
Unique NameXLOC_039414
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_374:33211..37088+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039414 ID=XLOC_039414|Name=XLOC_039414|organism=Clytia hemisphaerica|type=gene|length=3878bp|location=Sequence derived from alignment at scaffold_374:33211..37088+ (Clytia hemisphaerica)
ataaaatcaaaacattgtgtgtcatgattttttttcaaatgaatttaCTT
TGGATTAAAAGAATGTCAACCTGTTTCTATGCTATCTAAATGGGAGCTTG
CACATAGCACAGCATTGACGCATTGACTAGATTTGAATATTGTAATATAA
CCTTTAACGACTATTGATATTCCTTGTAGTCTCTTGTGGAGCTCACAAAT
CATAAAACGATGAAAAACGAAGAGAATAAACCACTTCTTGGTGAATCCAT
ATCTTCCAAAGAAGAAACAGTCGAAGGTGAAGTTGAAAGTCCTTGTTTTT
TATGTGGAACCACAGTCAATAAAAATGATGACGAACTTGGTGAAGTAATG
CCTGGAGGAATGTCAATATTCAAAACAGCTGTTTTTATAGTTGCTGAAAT
TGCTGGTAGTGGAATTCTAGCTTTACCGAATGCCTTAGCTGGTACGAGTT
GGACTGGGATAGGGTTATTGGTTGTTTTAGGACTTTTAGCACTTTATTGT
GCAACTTTATTAGGTGATTGTTGGAACATCATTAAACGAAAACATGATGT
CCCAAGGAATATCAGAGACCCTTATCCCTTGATTGGGATCCATGCTGCTG
GAAAGTTTGGTAAATATGCTGTCGAACTATGCATCTTTTTTACATTGGTA
GGATCCTCGGTCGTATACATCCTTTTGTCagcaaaacaaatttcttcAAT
CTTAAACGTATCTATAGGAGAATTTGATGATCCTAAAACTGAATTTAGAT
TCTGGATTCTAATTTGTGGTGCTGTATTGATTCCATGTACTTGGTTTGCA
TCACCGAAGGAAATGTGGTTTATTGCCTATGGAGCAACAGTCTGCACTTT
TGCTGCTTGTGTATTAATCATTATACGCTCTACTATGCATTTGTACAACT
ATGGCATGGCAGATGAATCTAAATTTACAGACCCAAGTGTTACCAGCTTT
TTCACTGCATTTGGTACAATAGCATTTGCTTATGGAGGTGGATCTCTATT
GCCAACACTGCAAGCCGATATGAAGAAACCTACCAGTTTCATTTACGCAG
CATTTCTTGGTTTTATCTTCATCTTTGTATTATACCTACCATGCACCTTG
TTACCATACCTTTGCATTGGAAGTAAAATTGATCCTAATGTTTTAGAAAC
TTTGGAGACTCTACCAGGAGATGGCAAAACTATGATTACGATAGCCAAGA
CTTTGATTACTTTTCATCTTTTGTTTGCCATTGTCGTTATTACCAATCCA
ATTACTCAGTTGTTGGAAGAAAAGTTCGGAATTGAACACAGTATGTATTT
TTGTTCTTATACCAAGTATTTTAATTGTGCCAGACCCCCCCCCCAAACAT
AAACCACTGTAGTAGATACTTGACACCTGCCGATATTTTACACCATACGT
CCCTGTTTcgaataattattttcaaatttagcttaaagtgtttccgtttc
ataccAGACACATGTTTCGTATCAGTACAGTGTCTGCCGATTaatatatt
gtgctgatataaacaaaaattgttttcttttcctcctttctaaccaatct
tgctccacatccgtgtcaatccaatatcaaaaagcttgtaaattaaaatt
gatgagtaaacaaacaatatcactcttatttaaaaacaaaacctttaaga
ataACATACAATAATACTCCATCTTTTGTTTAGAATTTGGCATCAAGCGT
ATTTTGGTTCGATCAATTAACGGAGTCCTAATGATTGGCTTAGCAGAATT
ATTCCCAAACTTTGGGCCTATCTTGTCGCTCATTGGTGGATCTACATTGA
CTTGCTTGTGCTATATTTTCCCAGCCATGTTTTACTTACAAAtcgaagaa
aaacatttaataCCGTTACACAAGAAAGTTCTACTAATCGAAATAGTGTT
TATAGCATTGGGCTGTGGAGCTGCAAGCACTTATTCGTCTATACTTGGTT
TTGAGAATCCTTTTAAAACATAGATTCTATATATACTAACCTTGACGAAC
AACTGTTggagttcgaaaaatggaccatTCAGACAAAATTTAAACCCTCC
AGATAGAATTCGGACCATAACAGGCGGCATTTGGAGTgtgatatattttt
tcgaaaactccCCCTGTTCAGACCTTTAGCAGACGCTATCAAATCTTTTG
AATATCTGATTATTTGAGAATTCGaatcagtggcgtggtgggaaaatttt
tctggggtggccaagcagaatttggcgccctttttagaagctttttattt
ttgatgccCCCTCTTTTTATGTTACGTTTCCTTACGAAtacaatttaaga
aaattttggttAATTGTGCATGTAACAGAAGAAGACAGATATAATATCCA
AACTTAAAATGTCAGGTATGAAGTCTCATTGATCATTTTATATTAATTAT
CTCCTAATCAGATACATCATAGCgctatcaaaattattttctaaaaacat
tatTGAGCTTTGAGGATGTAGTATCTCtataaaacaacaaattgatACTA
CATGGCCCGCTTGATGACTTCTACCAGCTCTTCCTACCTGCTTACAGTAG
TCAACAAGACTGTATGCTGGTCCAAAATGAATAACATTTGTCACGTTCTT
AGCATCTACACCACATCCCAATGCGCTAGTTGCAACTGTGATTCGAACAG
CACCATGGGGATCAATCAGCGAATCCAGAACTCTCTTCTTTTTGTGCGGA
AGGGTTTCACTATGGTACATCCCTATTAAGTTTTGCCAATTTGGTACAtg
tagttttaaaatattttccattctTTCGTACATCCAACCTGCTAGCTCAA
TGGTGCGacaaaaaattattgttttggGACAGTTTGACTTTTGATCAATA
AGGAGTTGAATCAACCATCGTAAGGATTCAATTGTTATTGAATTAAAGGG
TCGAAAACTTCACCTGAGTAGATCTGAGTCAACTGATGACCTCCAAAAGC
ATCATCTGttggaaaaaactaaaaaccttcccatttattttttgcaaatt
tttatatagaaaaatttaaaatttgtttttaaattcaacCCTATCTACAA
GAGAAAATGCTTGTAGACTATCACATAAGTAAGTCTGCAAACCTATaata
aaaccaaacctaaaTTCATCGGTTAGTactctaaatattttttaattttt
catctttttctaattttcaaaacatactaAATCATAAACACAAAAAAGAg
agtgcgagcgaagcgagccagcgaaattttgttttttagatGACTAGGGG
CGCCATTTTTGGCTTTTCAATTGCCCATCTTTCGTTAGGGGTgcctgaaa
aatcctttttggcgccccttttttttcggcgccccttctcaaaagggctc
cgctgggggggaCCTGGCACCCCtgccccccctgccaccacgccactgat
TCGAATAAGCTACAAACTAAATAGCTTGAACACTATTCACAAGTTTAACC
CAGGTAAAAATCACAGACTATTTATTTGCAAGGCTTGTTGGCCACCATCC
TCCATCTGAGTTTACTCTTCCCTTGTGAAAGTAAAGTTATGAATTTATAT
CCCACAATGCTCCTCGCTGCTTTTTTATTAGGAAACTTCAAATTCGAACC
CAGTTCCTTTGTTCGCTTTTTTGCATGACTCTGATCTTGCACGAACGATT
GTACCAATTTCCATCAGcagcaaaattaaaaatgtgGTCCTGGGTACGAG
ATTTACTTCTAAattgcttttgtttttgttctttcCAATTTAAATTATTA
GTTTTTGTACATATAAATCAGTCAAAATGTTAccgtattttaaattttta
gcattttttaaattttatctgTATTTGCCTTCGAAATCTATCAAATCAAG
CCAAGAAAGTCTACAATCACCAAACAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062924TCONS_00062924Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062924-proteinTCONS_00062924-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_374supercontigscaffold_374:33211..37088 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03	0.02	0.14	0.06	0.25	0.27	0.2	0.32	0.3	0.52	0.26	0.15	0.96	0.95	3.43	4.26	1.82	1.12	1.7	1.45	0.83	0.78	1.89	2.87	2.35	4.41	2.66	2.15	1.21	1