XLOC_040314 (gene) - C. hemisphaerica

Overview
NameXLOC_040314
Unique NameXLOC_040314
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_410:29614..37281+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040314 ID=XLOC_040314|Name=XLOC_040314|organism=Clytia hemisphaerica|type=gene|length=7668bp|location=Sequence derived from alignment at scaffold_410:29614..37281+ (Clytia hemisphaerica)
GCGAAAAGTAGTTCAGTCTCTATACAATTTCAACAGAAACTGTATTTTAG
TAAGGTACTTAGGTTACCCTTTTATGGAGTTACCCTTTTATGGACACTCC
CTATTATGGACAAACCCTTCTAAAAGATTACAGATACACGTAGTGTTCAT
ATTATATCATGATAATTTGtatacaaattttatttttttatttttgataa
aataagtaaaaaagtaaaaatcagacagaaaaatgtcggaaaaaaaattg
acatgaTAAACTTTAAAATGTCTCCCATGTAGTAATGCACTTGTGGATCT
GTATTGTCTTTTAACAGCATCAAAGTAATTTATTTGACTAATGATTGGTG
ATGAAATTATGGTAAAATAGTGTATCAAATGGACGGGTCCACCCATTCTC
TAACATGGATGTTTGTTACTTATTATGAACAGGTGTttccaaccaaaaaa
gcccaaaacATGCGCAAAGTTCacaaaacacaatctgcgtccagATGTGT
gaacaataaataaataatatgtGGTCGTCATTTTATTCAGAGTTCTGGCG
GCAATCAAATATATGTTTCGTTCGcgtcaaaaatcttcttaaaattgagt
cagtcagtcggtcggtagtaaatctAGTcggtttttttggaaaattttct
gacTCCTCCGGCATATTTTGTCTGCCAAGTTGGTTGGATTGGTTGGCCGA
CGCAAACAGCCGAcgcgaacagaacatattttttattgtcGCCCTCTGCT
GTTGTTATagtcaaacacgtccaagtccaaaaacatGATTGCATcctgtc
tttatcaaatttagacagtagctgtacttttttaTAGTTTATcatattcc
aataacattataacatgATCAATTTCACCTACAGCTAGAGGCAATTTGAT
TGTCGCCCTCTGGCTCTGCTGTTGTTGTAgccaaacacgtccaagtccaa
aaacatGATTGCATCCTGTCTTTAttaaatttagacagtagctgtacttt
tttaTACTTCATcatattccaataacattataacatgATCAATTTCCACC
TACAGCTAGAGGCGAACAggaaaaatatgtttatttATTGCAAAAAGCAG
AAATTCTTGGAAATTTAACTaggtaaaaataacaaaaacttgagcaaatt
gcTAAACCttcaacaaatataaaaaagaatccccttaatgaaaatcatgt
gtttgatttgccaagtttcaaagtcattataaaaaagataTGACAGAAGT
TGAAGCTTGCAACATGCATTTACTTCCTGCATTTACACTGAAAACACTGA
GCCGCTTGAgtcgccatcttgaaacaccacatctatgttttctaaaaaca
aCACACGCTAAAAGAACTCTAagagttaacccgatcggatataaacttta
gaaatcggggaaacacggCTTACGTAATGAGCATATCGGggtaacatgtt
ttttttgcttttggtcTGATGATGGTGAAAAAGCCTATTTGAATAATCAG
CTGTTGGCTGACTAATTACAAAAAGTGCGcagaaatttgatttaaaatca
cTGCATttccctcttttgacgtcaatgcaatgacttctttcaatcgTTTG
CAATCTAAAATTCAACTGTCAACTTTCTGCCCACTAATTTTTGtcctttt
cttaaaaaatcagGCAGAAAGtcagccgtctaaactagagctaattcacg
atatgcaccactgcaatgacttcacgaaattatgcaacttttctgttttt
gttcaacccaatacgtcactttttctattgtttaagtgacatATTGGGTG
GATAATTTcgaaagttctcagaagactctccagtggtgcatatcatgaat
aaacgAATTTTGGAATTGTTATTATATGTTACAATGATTTATATGTGTCA
GTAATGAAATACACAGCATATTCTATTTTTTCTAACGCATGCGCGCAGTG
AATCATGTCAACAATCAATCATGAAGCAAGCGCAAGACGAAAATCGATGT
AACATAGATCTTTTGAATCATTTTTGGTGTATGGTGACGTCACTCTATTT
GATTATGCTGGGTGGTGTTCGAAGTATCAAACCTCTCTCACTTTTCGATA
CGAAGGTAAGAGATNacccaatacgtcactttttctattgtttaagtgac
atATTGGGTGGATAATTTcgaaagttctcagaagactctccagtggtgca
tatcatgaataaacgAATTTTGGAATTGTTATTATATGTTACAATGATTT
ATATGTGTCAGTAATGAAATACACAGCATATTCTATTTTTTCTAACGCAT
GCGCGCAGTGAATCATGTCAACAATCAATCATGAAGCAAGCGCAAGACGA
AAATCGATGTAACATAGATCTATTGAATCATTTCTGGTGTATGGTGACGT
CACTCTATTTGATTATGCTGGGTGGTGTTCGAAGTATCAAACCTCTCTCA
CTTTTCGATACGAAGGTAAGAGATTCATCAAATAATTTCATACGTATCTa
gccttcggatgctcttaacttttttagttttaagcctaaaaatattctcg
acatgttcttattttcaccattttgtgagcattttttaccattttcctag
gaaatcaggtgttttagaatCCGCAAAGcattaaaataatctttaatTTT
GCTAAATACTTtgcccatcgaagccttatgttcttatatagttttttctt
ataaaaaaggattCTTTTAGTCAAATACATCggagtctccttaactcgaa
ccacTATTACTCGAATTTTTCCTTAACtctaactcgaacaaatttgctgG
TCCCTCCACTTCACAAACACCTataaaaggaaaaaatcaaaatataatag
ccgcattatttttcatcattCAACACAAACTCTTATAAATAAACAAGTAT
AActataacttgaaatttccttgATAATCTTATCGGATCATATGACTTTC
CGTGGCTAAAAGTTTTTACTCAAACagctaattttcttttttcttattaC
AGGGGAAACATGCATTTACTTTCGCTTTGTATTCATCACCAGTCCTTTCT
AATGAGGTTGATGACAAAATCAACAAATGTAGAAGAGAGGTAACACATCT
TTAAAATAATGCTCTCAtgtaaagtttttgttttttatataagaacatcc
aaaaattgtGAAGCCTTTTGGTgttattaatttttcgagtttaaGCCTTA
TTTGTACTAGGGCTGGCGGCTTTTTATGttcggagaaaattttttgagaa
gTTTGGCGTTTAAGAGTCCACAGTGTGAGAAGGCTCTTTAAGCTAGGGTT
CTTAAGGTTGTCGGTTCAGTTTAACTTTTACTCATTTCTCTGATCCGTTC
TAGTTTTGTTTGAATGGAATCCAGTGCATCATCAAACAACATATTGATCT
GACTTTCCAAGATGAACGAGCACGAAATAACACGTCAGACCTCTTGCACA
CCATGTCTACCATATTTTCACTGACGTCAGCATTCCATTTGAGTTGCGAA
GATGCTCGACAATTCGCGGCGTGTGAATTGTACAGAGTTGGTTTGGATCT
AGCGGCTCAAGAGGTGAGTGGATTTTTCTTTTCACTAAAAAAAAGCTTTG
ACCGATTAAGAACGGAATAGTTTAATAGGGATCTGAGACATCTGATCGCG
GGATGAGAGTTACAGTCAatcctctctaattcgaacctctattattcgaa
cctctactattcaaactaaaatattcatgatatgcaccattgcaatgtct
tccacggacccaacagctgattggttgcaagtgacgtattgactgatttt
acgtacCACTTGTAACCAATTAGCTATTGGGTcggtgatgtaatgtcaga
agacattgcaatggtgcatatcatgaattggtcccctcagctagaaAGTC
GTATAAAATAGTCTCTGTAATTTgaatatttctctaattcgaagaaaatt
cttggtcccttgaagatcgaattagagagagtaaaCTGTACCTCAAACTT
CAAGTACTGCTGAAGTAGATTTATCGACATATTCTCCCTTTTCCAACTTA
TATTTGGTCTCCCATTTTCTTTATGTTAAGTTGGAAGAAAATATCGACAA
GCATCTTAACATTTTTAGCTAATATTTACCAACGTTTTGATTCTGTAGAA
ACTTGACCACAAATCCAAATGAACTTTCTAAATTCTCACTTAAAAAGTTT
CCAAAACGTTAAAATGGAATGGAAAATCTACAAAGGGACGGATATCTCAC
TGTATATCGTGCTTATGACTATCTTTCCAAACGTTCGCTCAACATTCAAA
TGATGAACAAATTTCCTGTGTAAATGAACATTTCTAAGACGAGACGAACT
AAGCTAGCCACCCTACAAAAGATATGCAAAGAATTATTTTCCCGTTTGTT
TTTTCCTTATTTCAAACGTTTGAATGTTAAAGCgaacttttgaaaatata
gcCATAAGAGTATAAACGTTAACAACTTTTCGATTCTCATTAAAATCATC
TCCATGACATCATTCAAAGGTTTCCATGGTGATCGAAGACAAACAAACCT
TCTCAACACGAATGATCGACGTTGTTGGTGGACGAATCGCTAAAACCTTA
CTATCTGGTGAAACCCAACATCTTTCGGACTCCTTAAGTAAATTACCCAC
AAATATTTCATCATGGCTGGCTAAACTGGtatgtttttataatttttgtt
aaattgtGGCAGATATTGGAAAGATAGATGAAATGACAGGTAAAATAGAT
ATAGGTAGGGTAGGTAGGTAATTAAGCGCAGGTAGTTTAGCAAATAGTTT
ATACTTAAAGGATAATCAATTGGTTCAAGATATGTTGCCTGTAGATTTGT
TCAGTGTTTCTGAGCTAAACCTCCAAATCTTTTTGTCTAGCTCTTTTCCA
GAGTCGAGATATCAGAGTTACgagttttttacttttagcaagaaaacaat
ggaattccaACGCAAGAGCCCGTGTACAAGCActtattttcaaagatttc
aaattgTCATATCTCGACTTTCGTAAAGACTTAGACAAAAAGATAAGTTT
TGTTGAGGATTATGGAACGAATGTACAGGCCAAACATCATCTGTTTATCT
TTTTAAACCACTTTCCCGAGTTTTATAAGGATGAGACAGAAAGACAGCTA
GAGATTTCAGAAATAGTGGTAGAAATGCCTGTCTAGATATTATAATAGAG
ATCCGAAACCTCGTCAAAActgcttttaggggcggttcagaactaggggg
ggggggctttccTGTACAACCCCTAAACTTTTggtctagtgggtcttttt
ggatgaaatttggcacacaaaaTCCTTGTCActtaagacaaaaaaaaatt
tttgatgacgtcactcatcatgcgcAAAgctcttataaatagctattgtg
ttctaacaaaggctttagaaaaaagttgcctgagtttaaaatgcttattt
tatcctaaatattcaatgaaTTACGGCtcaaacgatatatttgacataaa
aaataaatttgtattggaaaagtgtaaATTTTTGTGACatcttactgtca
gaaatgtcatcatgctcaaggtgtgaaaatttttaggtgtcaagtttttt
tttattttaaagctaaataaaagttaggaatttacagaaaatttcatggc
aaaagctttattatttcaggcgctattaccaataatttgacctcNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTAGGTCGAA
AAGGGTTAACATTCACAACCTATTTTGGTGCTAATTTAGTGCTCAttcta
ttaatttttcttttttctcttttattataggagaaaaatacgaGCAATGT
TGCAGAGCTACCCATATCGAAGACCTACTTGCTTTTACAATATTTGAACT
CACATCTTATTGAACACACGACTAAAGAAGCAAAATTTATCAAAGAATTG
ATCGAATGTCTCAAAGTGTTTGTTTGAGGGAGAAGTTGTTGGTAGTGAAT
TTGGAGAATGGGCAAAAGGATTAGATAGTGGATCGTACACTACGATGCGT
GGTAGTCATTGGCAACGGTTGACGTGAAAGGGTTTTGAAGATGAGATTAA
TCGAGCTATTGTTGGAAAATAACATTTGGATCTAGGGACAATAGTGACAT
TGGCATATGGAGAAGCACCGACTGGTttgttgttgaaaaaaaaattttgt
cacgAGAAACacagaaaataaatttcttgaGCAGGGGAATGTGTTTTTTA
TGGTGAAGGCAGAAGAAGCCGAAATTGATGTGCGATAAAAACTCAAAAGA
CAATTGAATATAAAAAGTGAATTGAAAAAGCTCAAATATATTATGTCACG
TTGAGCAATACAGTgtctaaagaaatttcaaaaggcAACACTACTAGAAG
ATGTACTCAAATCGAAACAATTCTGTGCACAAAACAGTGGTACAGGGAGT
ATATTTGGCATCTTTGGCACTGTCAAGATTGGAAATTGTTTGCCCATAAT
GCGATGTATCAGAAAGCCCTGGAAAGCCCATAATTCATACTTCCTTATGC
ATTCCTGTAAAAGATCAAaaactttaatgggataaactttcgcggagatt
aaatttcgcggatttcgtggatttgggtgtcatccgcgaaaatccacgaa
attaaatcccaatggaaatttggaagggcctcatccgtgAAATATTTCTA
ACCaatactcaaaatatgtcaaataaatactttttgaatagttacttgca
tcaaaaaagcgcaaataatgtgtatttcaacaaccaatatcCTTGATTTG
ACAGTACAAAGAcacaaaaacgtgaaaatattgtcacccaatagtgccac
ctgCGAAACCTCTTAGGGTATTATACCTTGATGATGCAGCCAGTTGAATG
ATACAATGGCACCATTTCGTTCGTTTGATTATTTGATTTATATAGATAaa
acagtggagtctccataactcgaaccttcacgggaacgcaaatttgttcg
agttatggagtgaGATTTATGAGACACTTTTAACTAAAGGGACTAGAAAA
CTCGTTCGAATTAAGGTaacattcgagttgtagaggttcgaattatggag
actccattgtATTATAATTACACACTTTTCACcaattaaattttatttat
tctATGGAAAAAGACTATTTGGAATGATCTGAATAAAATAAATAGAGAAC
GAATACGAATCGATTTGATTGAATGAAGTCTTGTATTCGTTGGCTTCAGT
GTTTAATAATGATTTTATTTTGCCGttattatttttagaatttaatgaaa
aaatagtttatttATATTACAGTATTTGAATTGCAATTTGATACATATAT
TTGATACATTATTAACGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064295TCONS_00064295Clytia hemisphaericatranscript
TCONS_00064296TCONS_00064296Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064296-proteinTCONS_00064296-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:29614..37281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2	2.19	1.01	0.94	7.42	5.25	8.24	8.8	6.05	6.52	8.54	4.78	7.86	6.5	4.66	5.88	5.9	7.18	4.58	5.09	4.8	3.88	4.61	5.27	14.21	13.04	3.74	2.61	4.6	4.08