XLOC_042248 (gene) - C. hemisphaerica

Overview
NameXLOC_042248
Unique NameXLOC_042248
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_472:299915..306545+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042248 ID=XLOC_042248|Name=XLOC_042248|organism=Clytia hemisphaerica|type=gene|length=6631bp|location=Sequence derived from alignment at scaffold_472:299915..306545+ (Clytia hemisphaerica)
GATGTGTTGAAAACGaagttagaaaaattaaaaatgcgaAGATCACTGCA AGGTAAAATTAtcgttttttcaattttcttccgAACATTCCTTTGAAATT CCCGATTTCCGTCTAAAATTCCGgaaatttagaatatttttcccaAATTC CGAAACTCCGGCCGTTTTTGTGCCAAATTCCTTTTTTTCCGGGCTGAGAC AGACCAATTTTCCGTTTTCGACATAGGACTTAATTTTCGAAATTCCGTCC AAATTTTCgtcaaattccgccactccgccCGAAAAAAAAGCatgattccg ctcctccgccaaccgtgAACCCCCTCTTTTACATACAGTTAACATCTATT AACCCTTAAATATATTCAGAACGCTATGGTTGATTTGAGTTGTAAAAGTA GCAGTATTAGTACTCGGTGTTTTGAAGATGTGTTCAATTAGAATCGATGT TACAACAGCTTTTAGaagatatttttatattttcttaattcAAAGACTGA GTATTTTAACTTTGTAAAATTTGTCgataaagaatatttttcccctgttt gtttgtaattttgacACCGAGCTTGTTTTCAACTTGATTTTTTGGTCCTA GGTGAAACTAGTATAAAATTTAATCTCACTTTTTTTCCGTTTCAGCGGCG AGTGGTAAGAAGAACATGtcagaagaagatgaagaagaaaatgaaataag ACAAAACCTcgatcaacaaaaacaaaagtatttTGATTATCAAATGTTCT TTGTATNATGTCGCTTGGTAGGCAAGAGGCTTTCGAACTTTTCAAAAGAG ATTATGCAGAAAATGGGCTAAtcgaagaaaacaaaaagggaTTAAAATCA AGGTATGATTATTGATTACTGTTATTTAttgcttttgattttttgaatgt tATTTATTATTGTGAGTAAGCATGTACGAAGAATTTATTACTATGtgctg gatttacgaaaatgaTTAGAAATTGCGTGATTGCTGCTTTGGCGAGAGGT TGAAGGATTCGTTtgattaaaggaagaaattttggcggaagaaaatttaa ttctcgccaaatttaaattatatAAGTACCGCCAAATTTCGTCCTATTTC AATCTCCAAAATTGGGTTTTCAACGAATTTGCTATCATTTTTGACCctaa atatcctgcaaccgccaaattaaattcccgccaaatttaattttctcggc catctgccaaattaaattccctccgaaaaatttttttcggccatccgcca aattaaattcccgccaaaatatcttcctttaatgtaataGTCTATGAAAT GAAGCATTGTTTCATCACCTTATGATGGTCAGTcatcatatttttctttc taaaaatattttttggtcatttttcttactttttcatTCACTATTTAGAT ACACCGATGCAAAGCGGCTTGGAGAGCAAGTGAACGCTGCCAGGTCACAG ATTAGTAAGTTGTTAGCATTTGTGTGTGTAACTGCAAAGATCTTATTGCA AATAGTTTAgataattatattttaaagaCTATTAATTTCGATAACTAATT GTTAAGTTCCGTCGATATGCTGTTTTTACTTCGACTGTTATTGGTtgttg ttaaccggttactttttcgaagcgggctacatggctttttgcgcaatgca attggttcttttcgcatgacgacgggcctacattgtccagagtNTTTCAA TTTTCTTCCGAACATTCCTTTGAAATTCCCGATTTCCGTCTAAAATTCCG gaaatttagaatatttttcccaAATTCCGAAACTCCGGCCGTTTTTGTGC CAAATTCCTTTTTTACGGGCTGAGACAGACCAATTTTCCGTTTTCGACAT AGGACTTAATTTTCGAAGTACCGTCCAAATTTTCgtcaaattccgccact ccgccCGAAAAAAAGCATGATTCCGCTACTCCGCCAACCGTGAACCCCCT CTTTTACATATAGTTAACATCTATTAACCCTTAAATAGATTTAGAACGCT ATGCTTGATTTGAGTCGTAAGATTAGCATTTTATGTTACTCGGTGTTTCG AAGATGTGTTCAATTAGAAGCAATGTTACAAAAgcttttaaaagatattt ttatattttcttaattcAAAGACTGAGTATTTTTACTTTGTAAAATTTGT CgataaagaatatttttcacctGTTTGTTTGTAATTTCGACACCGAGCTT GTTTTCAACTTAATTTTTTGGTCCTAGGTGAAACTAGTATATAATTTAAT CTCACTTTTTTTTCCGTTTCAGCGGCGAGTGGTAAGAAGAACATGtcaga agaagatgaagaagaaaatgaaataagACAAAACCTcgatcaacaaaaac aaaagtatttTGATTATCAAATGTTCTTTGTATTTGGTATCATTATatct ttcaatttcatttcggCTCTTTTAGAACGTttaaaaaaatcgagaaaaac cagaacaaaaatattcttcaaatttAATGTTGGCTCCTCCTAGATTTTGG TAGGATAGCTACtgtcaaattaaatttgaattctGAAGTCTGACCAAAGG CCGACTAAATTAGGTCTTTTGCAATGTTATCTGTCCAGAAGCGCCACTGC CAGTGCATCACTGACTAATATGCAAATTTGTTGAAGACTTTCATATTCAC GATTTTCAGGTACAAACAATCGTTCAACCAATTGAAAGCTTTGAAGACAG AAATCGAACACATGCAATATCTGttagagaaatcgaaagtgaaactgcAG AATGATTTTGAAACGTGGTGGAACGAGCAAACGATATCTCAAGACGAAAT CATACAAAACGTATACTTTTGTTATTTATAAATATTcgtcattagcgagt ttataaaACACCGCTTTTGCGGATAGGGATAGTGAATGTAGTGATGTGGA ACAACCCGTAGTTTTGACCCGCCAAACCGAGGGTGGTAAGAATGCTGATT TTTTGTCATCTTCAGCTAGTCCGAAAATAACCGCCTTTAACTGGACGGAC TTTTAGCTTATCAGCCGGTTAAAAAAGCCATATGGTTTCTCCAAGATCTA AGAaggattgaaaataaaacaacatcTTTTAAAGGAGCAAGGTTCTAAAA TGGACATCTCAAAAATATGTGATTTATTTTTCTATCGGTATTGCCTTTTC CGTTAAGAggatcatttcaaaaaatccttTCTTGATTTTAACAGCCACTC GATATTGGCGTTCGTAAAGCGTGGCGTACACCTCCGCCCTTGACACCACT CGAATCAACACCCTTTGCGCCCAATGACGAAACGAGGAAAGGAGAGAGAC ATTCTTTAaggaaaagtgaaaaatcaGGCAGTTCTTCACTAAGTAATAAT GAACAATACAGACAAAGTCATTCATCCATAAATAACGATAATTGTAACCC AAATTACAACGGAAGCAAAGAAAGACTAGCACCTGGATATGACACTAAAT ATGACTCGAATCCATCCAGTAATATTAAAGAACATTCACGAAACTCAATA CTATCAAGTCAGCAAAATTCGAAGAATAATTCTCGAAATTCTGTACTCTC AAGTATACAACAAAAACATTCAATAACAGCAGCATCATCAACCAATCAAA TGCAATCACGTGATTCAAGTGTGTCTGGTAATGGAGAACGTCCGAAATCG TCAGGTTTACGTTTGACAGGTGATCCGGACACTGATGACGATATAATGGC TTTCATGAAAGCACGTCAAGAAATATTAAAGAGAAGTAAGTATTACATGG TATGTCGGCAGtatattggcaatttttttACCTTCGCAAAATCAGCCTTA GCTTTAGAGTTCGATGAGAGGAACTTTAAAGCTAAGACTGATTTTGTGAA GGTGAAAAATTAGCCAACATACTTGATAATCCATAATCAGTAACATAACA CAGTGCAATTTCATTAGTACCGTTTTGAGACACATGGAAATGGAAGCTTC AGGTTGTAGCTGAAGTTGCTGTGAAGAGTCCAGTCTTTCCTTTAGTGTTT GGGGATTACACTCCATTAGCAGCGGTTATAGTTGAAAGATTTCTTAGACC GTGGGCTATTATTATCTTGTGATATCATTAGCACACTCATCATAAAAGta ccaaaaaaataagaccagCCGAACTTCTTAACTTACAggctcttataaaa agtgtattTTATAGTCTAAGGGGCTCATGCTACAGATtgattgaaaatct aaaatgaacCAATGTttaatcaaattataaaaatcaagTAGGTCTATTTT CATCGAAATAATTGGTTGTACTTTACACTGTCAAAAACCACTTCATATAA ACGTAAACAAACTAATTCAACCCATCAAAGTCGACAATTTTCCATATGAT TTATGACATTTTGGACGTGAATTACCTTTTGTCTCGACTGTCGATGATTA GTAATTGTAAAGTTGCCTTTAATTCGAATCAATAAAACGGTTGCCCCCTT TCATACAAAAGACTCCTGCAaaacaatacacgttttttatttgGTCTAAG ATTATGAGAACATTGAGACTgaaattttaggaaaaattagaacatcttaa gaacattaccaaatttccaaatttggtcaaaattatcTGAATTATAAGAA ATTTTCGTAATCGCAGTGATGCTTTTACTTTTCAACTttaaactaaagtc tattcacgataagtgtgcactcttttttcttttacctataacttttgaag gaaatcttcaatctttataaatttggtatcgttggagagatattagtgag tggaacaatttgaaataaaaaagttttaaaaaaaattctaaaaacgaaga tgaaaataaagaagaaaaaaatgaagatcttgtagaaaagtgctataact ttaattttcgcTGGAgaaattctttgatcttagaaggtcatcactgtgaa gaaatttcactaaaatatttattcaatataaagttacgatacaaagttaa taagtgattgactccaaaaaacagcagaaaacagcagaaaacagcgtttt tagacgtcaatcagcttataactttgtttgatatctttcgactgaatgat tatttttgagaaatcttttcacattgatgacgttcgatgattaaggattc acttcagtgaaaatgatagttatagcacttttcaaCAAGATCttcgtttt tttcttctttattttcatcttcatttttagaatttttttaaagatctttt tatttcaaattgttccactcactaatatctttccaatgataccaaattta taaagattgaagaattccttcaaaagttataggtaaaagaaaaaagagtg cacacttatcgtgattAGACTTTAGAGCAGAATTGTTCGACTTGAGGGCC GATATTTATCATCCAAGGTAACTTTGTATATTTTGAGTTAATCAATTTCA AGACCGCTAATAAGAAcatttgaggctcaaaattatcaataaaatCAGGC TTAGCGGAAATTAagatattttataagaaaagcgTGTAATGATGTGTGGT AGTCCCTTCAGAGTCGAATTTAAGTGTCAATTTTATCGTGCATTAGGGGG GTTCAAATTTTTCTATCAAATAGATTTATCATTTTAAGTGTCATTCTCGG TCAAAAGTCTGATCTGAATTCATTAACCTGCGCTGTCACCGTTTGAATAT CAAGCAAccattgaagaaaaaaagttacatttcGCTTTGATAGACTAAGA CCTCGGTTATTATAGGGGGTCTGAAAAATCTATATATGGGTTGGGGGTTG GCCTTTATGGGGGTTGATTATATAGGGGGTTTGAACcacctacaatcatg gtcgaaacatattgagattttagtgtatttaaacgtttttcagaatttaa agttcgggtgagatttgatattttagcacttccactttcttttatcgaat attttgattttggaggggttcggtggcttctaggctatattccaagcctt attggagcaaatttgagcttttaaatcctgagatcctaagtttctaagtc ttaagtctcatgttaaaactctccAACTTcagtttaacgcgcttaaaaat catttgtggtgtttaaattttcgcagggaaatcccctttgtgtcaaatgt tttgtccatgattgtagaaaaCTATGGTTGAGTATACAAGTTGAAAAACT AATACAACAATTTCTGTATTACTGACTCATGGAGTGGCAGTCATCGTCAC GTctctgtgacgtcattttaatcACGATGCCATAAACATTgcgtaaattt tgatttttctgcaGGTCAAAGGTGATAGAGGGCATTCATAATTGAGCAAT CGAGCACAAATGGATCCAAGAGACAGCAAACATGACACGAAGAAATATTT GTCATTACATTAAAAGATGATGACGTAGAATCGATTAATATTTCCGATTC AAATCATCAAGTATATTTCCTTGTTGGCTGAAATCTCACTTGAATGGTGC CATAATGCATTagtattatttttattgaatgaTAACCAACCTGCTATTAC AATCCCTAGCTGAGCACTTTTAACGTCATAATAACGCCGTTCTAACGTTC ATAAAGTCACAAGGTCCATTTAACGTCCATTCATTTGAGCATTTGaggta gttttgccaaaaattcgagaaaaaatgGGAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067661TCONS_00067661Clytia hemisphaericatranscript
TCONS_00067662TCONS_00067662Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067662-proteinTCONS_00067662-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:299915..306545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.6 8.79 2.33 0.84 12.54 9.68 7.93 6.55 4.92 5.95 6.83 6.2 2.83 2.19 3.95 4.09 3.98 4.66 3.07 3.17 3.76 2.96 10.95 11.09 4.76 5.49 4.55 3.48 9.96 8.4