XLOC_042290 (gene) - C. hemisphaerica

Overview
NameXLOC_042290
Unique NameXLOC_042290
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_473:120871..125307+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042290 ID=XLOC_042290|Name=XLOC_042290|organism=Clytia hemisphaerica|type=gene|length=4437bp|location=Sequence derived from alignment at scaffold_473:120871..125307+ (Clytia hemisphaerica)
gaccagcggcacgtcccgtACCCAATTaacctaagtgcccccccccctgg
agtTATATATCATTCATGATATACCAATGATTAGATATTAAAATGTGATA
AAACATTCCTTGTTTGAAGATGAAAGTCCTTCTAaagtttatagtttttt
tttcctgaaaacCCTAAATTAGTTTAGAGATTTCTTGGTTTTCAGAATTC
AATGTTTTACAAATATAAAACTAGGAAGAACCTCTTTTTCCTTTAATTTA
GATTAACTTTTTCTTGAACTtattgtgttttctttttgcaTTTTCAGTTA
ATAGTCTCTCTCGACGTACCAGTGATATTTGGTTAAGTGGCTCTCATCTA
AAATGATTTCTGCATCAAGAAATgtgttgaaaacaaaacacCATATCCTA
AATGTATTAAAGACTGGTAAGTAATtgattttctcttttgttttatATAC
ACCCAAAAATGGCCTAGTTCTAAACCCCGGTTGGATAACGAGTAAACCCG
GTCAACATTAGAGTAGTTGTGAGATtaacccccggggggggtactcaGGC
AAATGGAGGAtatggtatgtgccgcccttaagggtaccttttttggactt
ccaaagtcccgctaagggtctgaaaaatcagaaaatcaaatttcagtccc
actgagggtcgaaaaattggaaaatttcaactttttaccccctgaaagat
cgaaatttggtcaaatttgtcccgctaagggtcgcaaaattcccaaaatt
ttccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNctttagtcccggtaagggtccaaagNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccc
ccccccccgtcagctcgcaaccctagtacccccccggggaTTAACCTAAC
TCGAAGAAATTTGGCAAATAACCTTCTCTTTTCTAAAAGCTTCCAGGGGA
GGGAGCAAACGAGGGTTTTGATTTCCGAAATACTGAAGAATTTTGTCGTG
ATTTCCGAAATTTTTTGTAGGCTCCCCATATCTTTGAAACACTGTGCAGT
AAAAATCTTTACTGatagattttcagatttttgttaACCAATAAACAAAA
TTTTGCCCATTCAAATTCGTTTCTTTAAGGCTGGGGGAGACAGAAGACAA
AAACGTCCTTGCCATCAATATATATAataaagaaatcatagcatgaaTCT
CCAAGCCACAGCACGGGATGTATAGTTTTTCTTGGTTTTCTGGAGAAGCT
CAATGTTCGATTTTTGTTCCCTTATATCACATACACTAATcactatttta
atttttttttattgaaatcttttttaccACCGAAATACTCGGTATATATT
TAATGAACtttattgttttaaaactttttaaagcaCGAACTGTTATGGTT
AGAACCatcaatcaaaatggtttgttCGCTCGTGGTCCTTGGTCTAGTTA
AAACTAAGCAACTATTAACTTTCATGATTTGAAAGAAAGAGAAATCAGGT
CTTTAGTGGCAAGATTTTGAAACAGGGGGCTCTCAAGAATAATCTAAATT
TTGGGATAGTAGATGGCACAATAAAGTTCCATAAGGGGCcccccagtggt
ttgcgtgaatgcgtgattttcggttgcgtgaatgcgtgaaaattgggaaa
aaaatgtGTGAATGCCTGAATTAacaaaacttgcgtgaacgtgaaaattc
gctctttgattgcgtgaatgcgtgaatctgggctattttttgcgtgaata
cgtgaattttcccttttttccaccgatcatgtgtagttttcccgattttc
caatgttcccccgatttttcccgaaaattttccgatttcctgcaaaaatc
gggttattgcgtgaattgagggtccacTGGGGGAGCCTCCATAAGCCTAT
CATAATAAGACACTGTGGTATTATTTACAATAAAATAAATGCAGAACACT
TCAATTGAAGTGTTTAGAAGGTTTATAATAAGACCTTGATATCAAAACCC
TTGGTGGgttaatttttatttaatgAATATATTcctgatatatttttcaa
gtaaatATGTTTTGAATCCATCCTCCAAACCCACACGGTTAACTTATTat
tgccgccatctttaaaaaagcatttaacGAAAACACTCTAGTAAAGACCA
ATTAGCACGGAAGCATTCTTCAATATTTTCCCATTTCTCAATGGCTTCGT
cataaaaagtatataaaaaatTATACTGACCAAAAGCGATTTGTTATGTT
tgagataaattttttttttcaagtttcgATTGTGCATCTACTATGAAGAA
CTTTATAAGAAGTATTGCGGTTCAGAATCTGATTCTTCCGTAGGTGGATA
AAGTAAAAAGCTATTATACTAAAAATGTATAAAGTAGAGTATTTTTTAAG
ATTGCTTTCATTTCAAAGTATTCTCTTATATGCTTCATACTTAAGGTTAA
ACTACCTATCtacttcatcattttcaaaatgtgtACTTTAAAGTTTACAC
GTTAAGAGAGCGatcagaaaaatatatttctgtGGCGCAATCCGTAAAAT
ACCGGTTTTGTGGTTTTTGAGATTCCGGATCtttgatattgaatttttcG
AGTTATGTGCATTTTAAACGAAATAGATGGAAATAGGTTTATATGCAAGT
TTCACTCTTATTTGCGTCCAGGAAAGTTTGAATTTCCGACCTAAACATTC
CCCGAAAGTCAGAATTTCGACGCCAGTAGGGGTATGTTTTTAGACGGTTT
TTAGCGTTTAGCATGAACTTTTTTGCCTAAGGCACATTGATAAGATTGGA
TTTTTGAGTCAGGCAGACTTCTCTACAAAGGGACAGGGGTGACAAAAGGT
TTGATCTCCTCAACATGTAGTACGTGTACGGTATTCTTTCTGTAAAAGCT
CATTTTTACTTGTTATTCGTTACAGGAATGGCAAATATAGACGAACAGAT
TGGCATCATCATGCATATCTTGGGATGTATTTCCCATATTGCTGGCTGCT
ATATTCTTCTCAACACAAGCCATTCAAATCATCTCATGGATTCACAGAGA
TTATATCTAATCTACTTAAGCATTTCAGAAGGACTTTATTGTCTTGCCTT
CACTTTATTCTATATTGGTCTCGGCTACCAGCTCCCATCATTGAAGAACT
TCTCTTTCATCATTGGCAgtggattttatcttttctaCATTTGCATCATA
ATGCTTTTGACGATGGATCGAGTCTTAAATGCAAGAATGCATCGTACCTA
TCTTGCACTGTGGTCAAGGAAAAGAGCACATCTTTCAGCCTGCTGTTCTG
GAATCTTAGCTCTGGCTACAACCATTGTCTCCATTATCATGCtcccaaat
tttgaaatatcattTAAAATTATGTCGCTTTACATTTATCCTACTATCGG
TTTTACCTGTGTTTTCTTTCTCATCTTTAGCTACGTctatctttttcaca
aaatccgTTCGTTTAGAATCTGTTACATTGCCCCGATGATTGTGATCAGT
CCAGTTCAAGTTGTCAATAAGGAATCAAGTGTTAATCAAGACAGTGGAAG
TCAATCGACAGTCGATAATAACCAGCAAATTGAACGAAACAATCCTGGAA
GATTGGAAGACGATCAAAGTCAACAATCAAGACGAAATCAAGGGAGATTA
GAGAATCAAGCTTCCGAAGAAGAGTTGAGATCAGAGTTTGAAACGTCTGA
AATTCATGGAGCCGAGGAAGAAGACAATGGGCAACCTCCTCATCAGAATA
ACAACGTGAAACGTGAGCAAGTAAGAGGACAAAGGCGAAATCAACGGAAC
TTAGCATATGAAGAAGGGTTAAGATCAGAGTTTGAAACATCTGAAATTCA
TGGAGCCGAGGAAGAAGATAATGAGCGACCACGGCAATCTCCTAGTGATC
AAAACGGACATGAGCAAAGTAGAGGACGAAAACGGCAGCAGCAACAACAG
CAACAGGTCAACAGAATTTATGAACATCTTAAAAGAAGTATTTGTGTCCC
TGTACTTCTAGTCTTGACATACATTGTATTTTACATCATCCCTGACCAAA
TGCACTTCTGGATGCATTTAGCAAACAAGGAGCTCTCAGGAGAAGTACTG
ATCCTTTTTGGGGTTCTTTATCCGATGTCACCAATTTCTGATGCAttcat
atatattttctttaGAAGACAATCAAGACAAtttttaaaaagacaattat
TAAGATTTTTAGAGAGTGTTGATTTACgttaattttttgtattttttgta
aacttaaaaaaatttattgtatACTTGCACTTGCACA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067726TCONS_00067726Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067726-proteinTCONS_00067726-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:120871..125307 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54	1.34	0.29	0	0.17	0.14	0.83	0.87	1.39	0.76	0.92	1.02	0.64	1.02	0.95	0.61	0.78	0.77	1.15	1.21	0.75	0.48	1.56	1.14	3.22	2.5	0.41	0.33	1.73	1.49